Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.36616 * 2 1 4 4 C 1.54368 * 110.31690 * 122.18036 * 2 1 3 5 5 C 1.54464 * 103.04415 * 136.72051 * 4 2 1 6 6 H 1.09005 * 110.40238 * 241.46606 * 5 4 2 7 7 N 1.46496 * 110.40931 * 119.15978 * 5 4 2 8 8 C 1.34777 * 120.00258 * 155.00019 * 7 5 4 9 9 O 1.21279 * 120.00166 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99762 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.46925 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47340 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47340 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46919 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47028 * 60.00648 * 18 16 14 20 20 H 1.48503 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47412 * 300.00257 * 18 16 14 22 22 C 1.51511 * 104.63158 * 0.36672 * 5 4 2 23 23 O 1.20817 * 125.94423 * 159.58710 * 22 5 4 24 24 O 1.34565 * 108.10759 * 339.62280 * 22 5 4 25 25 H 1.08997 * 109.47256 * 297.82447 * 1 2 3 26 26 H 1.09007 * 109.46782 * 57.82262 * 1 2 3 27 27 H 1.08997 * 109.47479 * 177.82113 * 1 2 3 28 28 H 1.08998 * 109.46476 * 182.17326 * 3 2 1 29 29 H 1.08997 * 109.47357 * 302.17739 * 3 2 1 30 30 H 1.09000 * 109.46692 * 62.17884 * 3 2 1 31 31 H 1.08993 * 110.70494 * 18.32180 * 4 2 1 32 32 H 1.09006 * 110.84386 * 255.17609 * 4 2 1 33 33 H 0.96999 * 119.99694 * 334.99409 * 7 5 4 34 34 H 1.09000 * 109.47318 * 299.99141 * 10 8 7 35 35 H 1.09000 * 109.47161 * 59.99772 * 10 8 7 36 36 H 1.09004 * 109.46930 * 299.99901 * 11 10 8 37 37 H 1.09004 * 109.47059 * 59.99503 * 11 10 8 38 38 H 1.09004 * 109.46785 * 299.99692 * 12 11 10 39 39 H 1.09000 * 109.47196 * 59.99588 * 12 11 10 40 40 H 1.09000 * 109.46497 * 299.99439 * 13 12 11 41 41 H 1.08999 * 109.46623 * 59.99375 * 13 12 11 42 42 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0660 -0.7710 1.2253 5 6 3.2144 -1.6157 0.6306 6 1 3.0098 -2.6787 0.7583 7 7 4.4883 -1.2625 1.2620 8 6 5.4960 -2.1569 1.2929 9 8 5.3481 -3.2544 0.7984 10 6 6.8066 -1.7932 1.9419 11 6 7.7711 -2.9768 1.8417 12 6 9.1014 -2.6079 2.5011 13 6 10.0661 -3.7912 2.4003 14 6 11.3766 -3.4275 3.0493 15 1 11.5085 -2.4501 3.4893 16 6 12.4074 -4.3428 3.0814 17 7 12.2470 -5.5329 2.5452 18 14 14.0322 -3.8918 3.8853 19 1 13.8022 -3.5603 5.3144 20 1 14.9680 -5.0408 3.7886 21 1 14.6177 -2.7161 3.1925 22 6 3.2350 -1.2521 -0.8401 23 8 4.1656 -1.4049 -1.5954 24 8 2.0369 -0.7288 -1.1584 25 1 -0.3633 0.4797 0.9088 26 1 -0.3633 0.5473 -0.8699 27 1 -0.3634 -1.0269 -0.0391 28 1 3.1517 1.4175 -0.0390 29 1 1.6759 1.9655 -0.8698 30 1 1.7393 1.9418 0.9089 31 1 1.2922 -1.4137 1.6448 32 1 2.4451 -0.0830 1.9810 33 1 4.6065 -0.3848 1.6577 34 1 7.2365 -0.9299 1.4340 35 1 6.6376 -1.5506 2.9911 36 1 7.3411 -3.8399 2.3499 37 1 7.9401 -3.2198 0.7926 38 1 9.5316 -1.7446 1.9933 39 1 8.9320 -2.3651 3.5502 40 1 9.6361 -4.6546 2.9079 41 1 10.2354 -4.0335 1.3512 42 1 12.9723 -6.1766 2.5675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807150858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -143.640775 kcal Electronic energy + Delta-G solvation = -21958.065379 eV Core-core repulsion = 18516.450776 eV Total energy + Delta-G solvation = -3441.614603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76027 -39.51783 -38.05328 -35.44264 -34.79563 -33.87994 -32.62129 -30.82103 -29.32129 -28.11816 -25.81065 -24.84809 -22.70207 -21.93491 -20.87654 -20.40717 -19.95355 -17.39161 -17.23498 -17.00882 -16.30059 -16.12652 -15.97732 -15.37328 -14.86073 -14.44510 -14.22536 -14.13675 -13.78482 -13.64345 -13.31352 -12.85372 -12.74650 -12.56911 -12.39281 -12.23972 -12.07968 -11.68014 -11.62243 -11.48931 -11.06033 -10.96504 -10.93613 -10.52305 -10.50810 -10.38975 -9.90263 -9.58719 -9.28910 -9.20602 -8.97053 -8.27808 -5.92590 -3.95197 1.53118 2.57796 2.84472 2.94605 3.36981 3.41285 3.43497 3.54188 3.71349 3.96492 4.05195 4.29587 4.50874 4.64989 4.78982 4.91813 4.96545 5.08392 5.12143 5.21013 5.22615 5.31854 5.36956 5.42567 5.45897 5.54080 5.83606 5.98409 6.15560 6.31650 6.35443 6.56407 6.86287 7.03939 7.15192 7.20486 7.26103 7.76528 7.93073 8.08830 8.14754 8.50380 9.12324 9.68149 11.18722 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047307 B = 0.002421 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.731289 B =11562.890950 C =11722.356069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.104 3.896 3 C -0.168 4.168 4 C -0.152 4.152 5 C 0.087 3.913 6 H 0.134 0.866 7 N -0.724 5.724 8 C 0.516 3.484 9 O -0.521 6.521 10 C -0.136 4.136 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.469 3.531 23 O -0.423 6.423 24 O -0.346 6.346 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.487 15.826 -0.876 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.067 3.933 3 C -0.225 4.225 4 C -0.190 4.190 5 C -0.021 4.021 6 H 0.151 0.849 7 N -0.381 5.381 8 C 0.304 3.696 9 O -0.395 6.395 10 C -0.175 4.175 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.305 3.695 23 O -0.301 6.301 24 O -0.264 6.264 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.239 0.761 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.135 14.743 -1.856 30.937 hybrid contribution 0.982 0.583 0.630 1.305 sum -26.152 15.326 -1.227 30.337 Atomic orbital electron populations 1.21896 0.90618 1.03915 1.03619 1.23013 0.96275 0.91749 0.82237 1.22317 1.02008 0.94146 1.04063 1.23270 0.98041 0.99839 0.97875 1.22176 0.85646 1.03746 0.90536 0.84855 1.45950 1.12529 1.18636 1.60958 1.21246 0.85515 0.84197 0.78635 1.90727 1.81808 1.22158 1.44802 1.21793 0.91942 1.02363 1.01449 1.21474 0.94853 0.95586 1.02334 1.21646 0.93821 1.00698 0.98569 1.19094 0.92874 0.92527 0.97247 1.21243 0.98061 0.99620 1.36974 0.92817 1.25049 0.98784 0.95081 0.95692 1.69966 1.32718 1.05616 1.45150 0.86665 0.83631 0.77831 0.79883 1.20309 1.21334 1.20290 1.23732 0.80631 0.74675 0.90471 1.90751 1.32501 1.48678 1.58207 1.87380 1.33264 1.65348 1.40408 0.89866 0.90962 0.90958 0.91806 0.90693 0.89813 0.87626 0.87876 0.76057 0.88934 0.88917 0.91741 0.91658 0.93455 0.93469 0.96590 0.96558 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 8.82 37.16 0.33 -0.14 16 2 C 0.10 0.56 1.25 -89.90 -0.11 0.45 16 3 C -0.17 -0.71 8.70 37.16 0.32 -0.39 16 4 C -0.15 -0.67 6.08 -25.25 -0.15 -0.82 16 5 C 0.09 0.79 3.39 -67.92 -0.23 0.56 16 6 H 0.13 1.37 7.56 -51.93 -0.39 0.97 16 7 N -0.72 -6.92 5.10 -53.79 -0.27 -7.19 16 8 C 0.52 7.24 7.83 -10.98 -0.09 7.16 16 9 O -0.52 -9.73 15.63 5.56 0.09 -9.64 16 10 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.47 5.82 7.83 36.40 0.28 6.10 16 23 O -0.42 -7.24 17.98 -18.31 -0.33 -7.57 16 24 O -0.35 -3.51 10.59 -39.74 -0.42 -3.93 16 25 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.34 7.94 -51.93 -0.41 -0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 0.30 7.82 -51.93 -0.41 -0.11 16 32 H 0.10 0.24 7.38 -51.93 -0.38 -0.15 16 33 H 0.40 2.40 8.37 -40.82 -0.34 2.06 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 37 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -37.80 353.12 -7.48 -45.28 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.97 Total: -5.18 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.61 Total: -7.06 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.46 Total: -34.30 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.66 Total: -21.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.80 -7.48 -45.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807150858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.359 kcal (2) G-P(sol) polarization free energy of solvation -37.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds