Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 C 1.50705 * 109.47090 * 119.99879 * 2 1 3 5 5 H 1.07994 * 119.99807 * 124.73754 * 4 2 1 6 6 C 1.37874 * 119.99752 * 304.74458 * 4 2 1 7 7 N 1.31513 * 120.00330 * 151.93460 * 6 4 2 8 8 Si 1.86805 * 120.00181 * 331.92836 * 6 4 2 9 9 H 1.48498 * 109.47340 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47285 * 300.00781 * 8 6 4 11 11 H 1.48499 * 109.46656 * 60.00515 * 8 6 4 12 12 C 1.53000 * 109.47292 * 239.99787 * 2 1 3 13 13 O 1.45202 * 109.47132 * 59.99840 * 12 2 1 14 14 C 1.34227 * 117.00054 * 179.97438 * 13 12 2 15 15 O 1.20821 * 120.00159 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99880 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.46905 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.30122 * 305.42023 * 17 16 14 19 19 C 1.52921 * 109.30043 * 186.03845 * 17 16 14 20 20 C 1.53347 * 108.67695 * 188.93718 * 19 17 16 21 21 C 1.53064 * 108.42186 * 67.53189 * 20 19 17 22 22 C 1.50178 * 109.89251 * 311.09850 * 21 20 19 23 23 O 1.21286 * 118.24499 * 197.60799 * 22 21 20 24 24 N 1.33351 * 123.51130 * 17.58817 * 22 21 20 25 25 H 1.08997 * 109.47438 * 293.42881 * 1 2 3 26 26 H 1.08997 * 109.47251 * 53.43051 * 1 2 3 27 27 H 1.08998 * 109.47090 * 173.42880 * 1 2 3 28 28 H 1.09004 * 109.46883 * 172.54495 * 3 2 1 29 29 H 1.09002 * 109.46684 * 292.54547 * 3 2 1 30 30 H 1.09000 * 109.46956 * 52.54405 * 3 2 1 31 31 H 0.97003 * 119.99983 * 354.88880 * 7 6 4 32 32 H 1.08998 * 109.47259 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46999 * 300.00321 * 12 2 1 34 34 H 1.09002 * 109.47551 * 300.00475 * 16 14 13 35 35 H 1.09002 * 109.46862 * 60.00914 * 16 14 13 36 36 H 1.09008 * 109.60437 * 308.69676 * 19 17 16 37 37 H 1.09005 * 109.60100 * 69.17820 * 19 17 16 38 38 H 1.08994 * 109.67033 * 307.79704 * 20 19 17 39 39 H 1.08995 * 109.70373 * 187.28510 * 20 19 17 40 40 H 1.09004 * 109.40021 * 190.97318 * 21 20 19 41 41 H 1.09004 * 109.33644 * 71.18648 * 21 20 19 42 42 H 0.96993 * 117.95122 * 177.75126 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7148 -1.5417 1.1333 6 6 1.6205 -0.2990 2.4804 7 7 1.5691 -1.1608 3.4725 8 14 1.1357 1.4825 2.7647 9 1 0.7348 1.6661 4.1826 10 1 2.2906 2.3646 2.4590 11 1 -0.0031 1.8329 1.8784 12 6 2.0400 -0.7213 -1.2492 13 8 1.5560 -0.0369 -2.4348 14 6 1.9172 -0.5467 -3.6228 15 8 2.6142 -1.5324 -3.6706 16 6 1.4522 0.1098 -4.8972 17 6 1.9994 -0.6638 -6.0984 18 1 3.0831 -0.7437 -6.0122 19 6 1.6530 0.0881 -7.3842 20 6 2.0055 -0.8008 -8.5830 21 6 1.0576 -2.0027 -8.5893 22 6 1.0106 -2.6235 -7.2226 23 8 0.5797 -3.7526 -7.1197 24 7 1.4177 -2.0001 -6.1164 25 1 -0.3634 0.4086 0.9429 26 1 -0.3633 0.6123 -0.8253 27 1 -0.3633 -1.0209 -0.1176 28 1 3.1218 1.4454 0.1333 29 1 1.7896 1.9163 -0.9492 30 1 1.5719 1.9934 0.8158 31 1 1.7490 -2.0999 3.3091 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 0.3627 0.1084 -4.9302 35 1 1.8154 1.1371 -4.9301 36 1 0.5871 0.3160 -7.3987 37 1 2.2278 1.0130 -7.4331 38 1 3.0354 -1.1462 -8.4934 39 1 1.8872 -0.2353 -9.5072 40 1 1.4122 -2.7397 -9.3098 41 1 0.0579 -1.6724 -8.8715 42 1 1.3203 -2.4649 -5.2706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809000301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = -137.589336 kcal Electronic energy + Delta-G solvation = -22840.614502 eV Core-core repulsion = 19399.262309 eV Total energy + Delta-G solvation = -3441.352193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87653 -39.88438 -37.39789 -36.59343 -35.12331 -33.51955 -31.88800 -31.58341 -28.40846 -26.34980 -26.13981 -24.53417 -23.81338 -22.75138 -20.66577 -19.45316 -19.18583 -17.68498 -17.27743 -16.77913 -16.63157 -16.17406 -15.79621 -15.47119 -14.74519 -14.47904 -14.16454 -14.02670 -13.65593 -13.38667 -13.26626 -12.74967 -12.43315 -12.25078 -12.04700 -11.92232 -11.82493 -11.70597 -11.58732 -11.43015 -11.39471 -10.69905 -10.31544 -10.28390 -10.17855 -9.98686 -9.89782 -9.79112 -9.25693 -9.06137 -8.90671 -8.18755 -6.59537 -4.16201 2.33387 2.49096 2.93464 3.10744 3.33454 3.39282 3.61068 4.10788 4.26336 4.29628 4.43257 4.43502 4.67657 4.84500 4.93051 5.07912 5.09133 5.19502 5.22993 5.35675 5.45682 5.47871 5.53619 5.73934 5.78004 5.83535 6.10047 6.23079 6.51394 6.55335 6.62401 6.68032 6.75455 6.83040 6.97732 7.22177 7.23388 7.44084 7.92637 8.07810 8.09456 8.28152 8.78267 9.47988 10.78169 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.003405 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.488531 B = 8221.077673 C = 8599.139095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 C -0.148 4.148 4 C -0.615 4.615 5 H 0.059 0.941 6 C 0.047 3.953 7 N -0.886 5.886 8 Si 1.049 2.951 9 H -0.298 1.298 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.094 3.906 13 O -0.352 6.352 14 C 0.452 3.548 15 O -0.516 6.516 16 C -0.131 4.131 17 C 0.152 3.848 18 H 0.087 0.913 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.136 4.136 22 C 0.516 3.484 23 O -0.561 6.561 24 N -0.710 5.710 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.272 0.728 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 7.146 -23.185 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.048 3.952 3 C -0.205 4.205 4 C -0.652 4.652 5 H 0.078 0.922 6 C -0.161 4.161 7 N -0.517 5.517 8 Si 0.881 3.119 9 H -0.226 1.226 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.021 3.979 13 O -0.267 6.267 14 C 0.295 3.705 15 O -0.406 6.406 16 C -0.170 4.170 17 C 0.046 3.954 18 H 0.104 0.896 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.303 3.697 23 O -0.440 6.440 24 N -0.364 5.364 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.998 7.420 -22.111 23.344 hybrid contribution 0.660 -1.301 -0.667 1.604 sum -0.339 6.119 -22.778 23.588 Atomic orbital electron populations 1.22155 0.97492 0.99958 1.00113 1.18542 0.92950 0.92503 0.91210 1.22293 1.00774 0.98384 0.99046 1.21628 1.33491 1.19558 0.90494 0.92245 1.25665 0.93253 1.04876 0.92282 1.70851 1.41017 1.04333 1.35524 0.84249 0.76948 0.76192 0.74462 1.22613 1.21392 1.20210 1.23468 0.98442 0.95786 0.80190 1.86494 1.69100 1.56030 1.15115 1.23497 0.77694 0.82766 0.86567 1.90664 1.35872 1.25821 1.88245 1.21854 1.04356 1.01656 0.89106 1.20808 0.98740 0.82001 0.93820 0.89558 1.21965 1.03231 0.98987 0.92876 1.21655 0.99865 0.95854 0.98730 1.21662 1.02488 0.98980 0.94418 1.20206 0.76749 0.85866 0.86840 1.90773 1.47101 1.19097 1.87030 1.45712 1.62585 1.17559 1.10542 0.92662 0.95007 0.94021 0.93157 0.94278 0.94113 0.91782 0.92040 0.91959 0.87071 0.86101 0.90362 0.89215 0.90873 0.90172 0.88198 0.88225 0.75638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.92 37.16 0.29 -2.77 16 2 C 0.05 1.13 0.58 -155.66 -0.09 1.03 16 3 C -0.15 -3.13 7.48 37.16 0.28 -2.85 16 4 C -0.62 -16.75 8.42 -34.44 -0.29 -17.04 16 5 H 0.06 1.75 7.99 -52.49 -0.42 1.33 16 6 C 0.05 1.32 5.08 -17.82 -0.09 1.23 16 7 N -0.89 -26.52 13.70 55.43 0.76 -25.76 16 8 Si 1.05 24.97 23.32 -169.99 -3.96 21.00 16 9 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 10 H -0.29 -6.45 6.81 56.52 0.38 -6.07 16 11 H -0.27 -6.01 5.62 56.52 0.32 -5.69 16 12 C 0.09 1.94 4.26 37.16 0.16 2.10 16 13 O -0.35 -6.09 8.88 -39.25 -0.35 -6.44 16 14 C 0.45 6.60 7.60 36.01 0.27 6.88 16 15 O -0.52 -8.95 14.30 -18.75 -0.27 -9.22 16 16 C -0.13 -1.17 5.46 -27.88 -0.15 -1.33 16 17 C 0.15 1.29 2.64 -68.37 -0.18 1.11 16 18 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 19 C -0.13 -0.68 5.30 -26.59 -0.14 -0.82 16 20 C -0.12 -0.64 6.03 -26.52 -0.16 -0.80 16 21 C -0.14 -1.01 6.03 -28.10 -0.17 -1.18 16 22 C 0.52 6.33 7.71 -11.87 -0.09 6.24 16 23 O -0.56 -9.56 17.78 5.55 0.10 -9.46 16 24 N -0.71 -8.28 5.01 -54.85 -0.27 -8.55 16 25 H 0.05 1.26 4.43 -51.93 -0.23 1.03 16 26 H 0.03 0.61 7.88 -51.93 -0.41 0.20 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 29 H 0.04 0.72 7.46 -51.93 -0.39 0.33 16 30 H 0.04 0.87 2.88 -51.93 -0.15 0.72 16 31 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 33 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.36 8.11 -51.92 -0.42 -0.06 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.41 5.73 6.95 -40.82 -0.28 5.44 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -33.28 328.93 -6.02 -39.29 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.61 Total: 2.38 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.36 Total: -8.20 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.48 Total: -34.31 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.52 Total: -25.12 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -3.96 Total: 21.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.28 -6.02 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809000301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.298 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds