Wall clock time and date at job start Tue Mar 31 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00172 * 2 1 4 4 C 1.52993 * 109.46981 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47400 * 66.30033 * 4 3 2 6 6 C 1.46898 * 110.99895 * 289.34521 * 5 4 3 7 7 C 1.50699 * 109.47119 * 296.88720 * 6 5 4 8 8 C 1.34517 * 125.78754 * 95.95361 * 7 6 5 9 9 C 1.41384 * 106.83624 * 179.97438 * 8 7 6 10 10 C 1.34508 * 106.84619 * 0.02562 * 9 8 7 11 11 C 1.50701 * 125.79280 * 180.02562 * 10 9 8 12 12 O 1.34300 * 125.79033 * 275.64365 * 7 6 5 13 13 C 1.46897 * 110.99820 * 53.30260 * 5 4 3 14 14 C 1.53002 * 109.47379 * 77.47915 * 13 5 4 15 15 H 1.09000 * 109.47031 * 54.13116 * 14 13 5 16 16 O 1.42898 * 109.46642 * 294.12826 * 14 13 5 17 17 C 1.50706 * 109.46947 * 174.13384 * 14 13 5 18 18 H 1.07998 * 119.99662 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99812 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99862 * 179.97438 * 19 17 14 21 21 Si 1.86797 * 119.99926 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.47179 * 270.00100 * 21 19 17 23 23 H 1.48504 * 109.47509 * 29.99862 * 21 19 17 24 24 H 1.48495 * 109.47153 * 150.00194 * 21 19 17 25 25 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47636 * 300.00534 * 1 2 3 27 27 H 1.09006 * 109.47253 * 60.00406 * 1 2 3 28 28 H 1.09000 * 109.47305 * 59.99488 * 3 2 1 29 29 H 1.09002 * 109.46879 * 299.99875 * 3 2 1 30 30 H 1.09001 * 109.47474 * 306.29417 * 4 3 2 31 31 H 1.09004 * 109.46992 * 186.29912 * 4 3 2 32 32 H 1.09000 * 109.46852 * 56.88496 * 6 5 4 33 33 H 1.09000 * 109.47018 * 176.88841 * 6 5 4 34 34 H 1.07992 * 126.58258 * 359.96249 * 8 7 6 35 35 H 1.08005 * 126.57666 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47138 * 89.99534 * 11 10 9 37 37 H 1.09003 * 109.47015 * 209.99596 * 11 10 9 38 38 H 1.08998 * 109.46749 * 329.99834 * 11 10 9 39 39 H 1.09004 * 109.47144 * 317.47174 * 13 5 4 40 40 H 1.09001 * 109.46783 * 197.47955 * 13 5 4 41 41 H 0.96690 * 114.00677 * 300.00388 * 16 14 13 42 42 H 0.97002 * 119.99789 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9801 0.5907 -1.2672 6 6 3.6139 -0.8300 -1.3401 7 6 4.3247 -1.5886 -0.2491 8 6 3.8120 -1.8997 0.9551 9 6 4.8143 -2.6090 1.6560 10 6 5.8796 -2.6885 0.8386 11 6 7.1897 -3.3599 1.1608 12 8 5.5752 -2.0737 -0.3161 13 6 3.4404 1.3331 -2.4142 14 6 4.2415 2.6218 -2.6103 15 1 5.3015 2.3817 -2.6926 16 8 4.0342 3.4863 -1.4915 17 6 3.7833 3.3113 -3.8696 18 1 2.9995 2.8739 -4.4701 19 6 4.3648 4.5006 -4.2549 20 7 3.9653 5.1020 -5.3540 21 14 5.7210 5.2567 -3.2165 22 1 5.1223 6.1642 -2.2049 23 1 6.4772 4.1793 -2.5290 24 1 6.6416 6.0278 -4.0899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8492 0.5496 0.8292 31 1 3.9782 2.1742 0.1134 32 1 2.5364 -0.9345 -1.2127 33 1 3.9056 -1.2311 -2.3108 34 1 2.8246 -1.6546 1.3170 35 1 4.7393 -3.0095 2.6562 36 1 7.1465 -4.4057 0.8566 37 1 7.9962 -2.8588 0.6254 38 1 7.3739 -3.3009 2.2335 39 1 2.3951 1.5797 -2.2280 40 1 3.5144 0.7191 -3.3117 41 1 3.1113 3.7416 -1.3573 42 1 4.3747 5.9386 -5.6253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:52 Heat of formation + Delta-G solvation = -65.727411 kcal Electronic energy + Delta-G solvation = -23501.306310 eV Core-core repulsion = 20063.070284 eV Total energy + Delta-G solvation = -3438.236026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34901 -38.94589 -36.86094 -35.19902 -32.95390 -32.29140 -31.98388 -29.93059 -29.22306 -27.18864 -26.13499 -24.64934 -23.74612 -21.54091 -21.44298 -19.96494 -19.70424 -17.32741 -16.64511 -16.41672 -16.31919 -15.97192 -15.14847 -14.87610 -14.64286 -14.58911 -14.02639 -13.88779 -13.42499 -13.09443 -12.98018 -12.92494 -12.63617 -12.54920 -12.21012 -11.98391 -11.90403 -11.69108 -11.47871 -11.20385 -11.04137 -10.78737 -10.71833 -10.47892 -9.86223 -9.62178 -9.46578 -9.16133 -8.65760 -8.47921 -8.11504 -7.62813 -6.13810 -4.25875 1.92175 2.80877 3.13851 3.47169 3.49879 3.65084 3.81975 4.50982 4.51711 4.82841 5.09200 5.15736 5.19938 5.24488 5.26565 5.33381 5.38044 5.40711 5.45933 5.51470 5.60162 5.62502 5.66932 5.78729 5.86359 6.01832 6.04516 6.14404 6.23557 6.36777 6.41926 6.48551 6.68357 6.77744 7.15251 7.26433 7.42260 7.50396 7.57923 7.73781 8.25514 8.80335 8.97325 9.50098 10.96465 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.005108 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.776805 B = 5480.351733 C = 6503.039741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.385 6.385 3 C 0.016 3.984 4 C 0.046 3.954 5 N -0.525 5.525 6 C 0.115 3.885 7 C 0.017 3.983 8 C -0.205 4.205 9 C -0.217 4.217 10 C -0.027 4.027 11 C -0.070 4.070 12 O -0.169 6.169 13 C 0.035 3.965 14 C 0.200 3.800 15 H 0.069 0.931 16 O -0.582 6.582 17 C -0.562 4.562 18 H 0.072 0.928 19 C 0.083 3.917 20 N -0.894 5.894 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.265 1.265 24 H -0.307 1.307 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.354 0.646 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -14.094 14.041 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C -0.061 4.061 4 C -0.082 4.082 5 N -0.248 5.248 6 C -0.012 4.012 7 C -0.034 4.034 8 C -0.225 4.225 9 C -0.236 4.236 10 C -0.077 4.077 11 C -0.127 4.127 12 O -0.065 6.065 13 C -0.092 4.092 14 C 0.142 3.858 15 H 0.087 0.913 16 O -0.388 6.388 17 C -0.600 4.600 18 H 0.090 0.910 19 C -0.122 4.122 20 N -0.531 5.531 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.190 1.190 24 H -0.235 1.235 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.200 0.800 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.945 -14.142 13.685 19.702 hybrid contribution -1.289 0.686 0.518 1.549 sum -2.235 -13.456 14.203 19.693 Atomic orbital electron populations 1.22730 0.82115 1.02237 0.99920 1.87917 1.19023 1.28456 1.95029 1.23549 0.96875 0.84803 1.00898 1.22649 0.89757 1.03013 0.92742 1.62230 1.59368 1.00308 1.02915 1.20976 0.97866 0.87930 0.94380 1.22415 0.82629 1.00174 0.98139 1.21599 1.01532 1.04901 0.94461 1.21511 0.94061 1.06669 1.01357 1.22343 0.98358 1.01630 0.85405 1.20233 0.90726 0.99394 1.02347 1.83997 1.30415 1.56352 1.35777 1.22984 0.97500 0.97347 0.91397 1.19952 0.96707 0.84681 0.84413 0.91315 1.86403 1.30776 1.69333 1.52290 1.21520 1.22875 1.07690 1.07920 0.90990 1.25010 0.96400 0.96467 0.94309 1.69959 1.42364 1.17583 1.23177 0.86220 0.81175 0.79183 0.78959 1.20572 1.18952 1.23513 0.90086 0.94399 0.94108 0.93340 0.91759 0.90716 0.86574 0.88607 0.90264 0.83395 0.84176 0.90581 0.90688 0.89780 0.94086 0.90867 0.79984 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.03 6.69 -35.23 -0.24 -5.26 16 3 C 0.02 0.22 5.72 37.15 0.21 0.44 16 4 C 0.05 0.73 5.36 -3.83 -0.02 0.71 16 5 N -0.53 -9.21 4.64 -236.07 -1.10 -10.31 16 6 C 0.12 1.83 5.12 -4.98 -0.03 1.80 16 7 C 0.02 0.27 5.97 -35.62 -0.21 0.06 16 8 C -0.21 -2.95 9.44 -39.70 -0.37 -3.33 16 9 C -0.22 -2.86 10.81 -39.70 -0.43 -3.29 16 10 C -0.03 -0.36 7.32 -35.63 -0.26 -0.63 16 11 C -0.07 -0.65 10.42 36.01 0.38 -0.28 16 12 O -0.17 -2.80 10.65 5.70 0.06 -2.74 16 13 C 0.03 0.66 4.56 -3.82 -0.02 0.64 16 14 C 0.20 4.59 2.53 -27.88 -0.07 4.52 16 15 H 0.07 1.74 7.20 -51.93 -0.37 1.36 16 16 O -0.58 -12.55 8.35 -35.23 -0.29 -12.85 16 17 C -0.56 -15.29 9.34 -34.44 -0.32 -15.61 16 18 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 19 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 20 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 21 Si 0.91 23.22 26.18 -169.99 -4.45 18.77 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 24 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.94 5.63 -51.93 -0.29 0.65 16 30 H 0.07 1.19 5.91 -51.93 -0.31 0.88 16 31 H 0.12 1.98 5.89 -51.93 -0.31 1.68 16 32 H 0.10 1.45 5.10 -51.93 -0.26 1.18 16 33 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 34 H 0.15 2.01 7.28 -52.49 -0.38 1.63 16 35 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.75 5.20 -51.93 -0.27 0.48 16 40 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 41 H 0.35 6.69 9.04 45.56 0.41 7.10 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -31.61 332.53 -5.92 -37.53 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.56 Total: 7.34 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.13 Total: -11.30 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.32 Total: -36.51 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.47 Total: -20.84 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.45 Total: 18.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.61 -5.92 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.193 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds