Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48498 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46678 * 299.99951 * 3 2 1 6 6 H 1.48498 * 109.47403 * 59.99401 * 3 2 1 7 7 C 1.37878 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99832 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00257 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00287 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62698 * 3.96774 * 13 11 10 15 15 C 1.53197 * 108.77476 * 233.63334 * 14 13 11 16 16 C 1.53043 * 109.31100 * 305.36419 * 15 14 13 17 17 C 1.53039 * 109.53766 * 61.36440 * 16 15 14 18 18 C 1.46925 * 120.63500 * 183.99483 * 13 11 10 19 19 H 1.09001 * 109.58417 * 246.30087 * 18 13 11 20 20 C 1.53000 * 109.58450 * 6.57509 * 18 13 11 21 21 O 1.44395 * 110.11346 * 171.91031 * 20 18 13 22 22 C 1.44829 * 103.23192 * 158.39962 * 21 20 18 23 23 C 1.54449 * 102.90298 * 323.39071 * 22 21 20 24 24 O 1.43784 * 110.11719 * 288.65078 * 20 18 13 25 25 H 0.96996 * 120.00042 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47254 * 60.00125 * 9 7 2 27 27 H 1.08998 * 109.47163 * 300.00563 * 9 7 2 28 28 H 1.09000 * 109.46991 * 60.00488 * 10 9 7 29 29 H 1.08998 * 109.47090 * 300.00084 * 10 9 7 30 30 H 1.08997 * 109.58691 * 353.41696 * 14 13 11 31 31 H 1.08994 * 109.58989 * 113.70543 * 14 13 11 32 32 H 1.08999 * 109.49909 * 65.31775 * 15 14 13 33 33 H 1.09003 * 109.49808 * 185.41218 * 15 14 13 34 34 H 1.09001 * 109.46144 * 181.39061 * 16 15 14 35 35 H 1.09004 * 109.46101 * 301.34532 * 16 15 14 36 36 H 1.08998 * 109.49288 * 178.68223 * 17 16 15 37 37 H 1.09001 * 109.49635 * 58.58764 * 17 16 15 38 38 H 1.08995 * 110.14617 * 50.28280 * 20 18 13 39 39 H 1.09004 * 110.72772 * 81.74319 * 22 21 20 40 40 H 1.08998 * 110.72695 * 205.03479 * 22 21 20 41 41 H 1.09002 * 110.31609 * 262.89595 * 23 22 21 42 42 H 1.08996 * 110.41225 * 140.73965 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2790 -4.9672 -0.0010 13 7 2.1657 -6.1344 0.0003 14 6 3.6322 -6.1520 0.0889 15 6 4.1866 -6.9769 -1.0769 16 6 3.5397 -8.3638 -1.0683 17 6 2.0268 -8.2240 -1.2520 18 6 1.4479 -7.4133 -0.0884 19 1 1.5713 -7.9668 0.8425 20 6 -0.0390 -7.1507 -0.3357 21 8 -0.7229 -8.3918 -0.6130 22 6 -2.1042 -8.0855 -0.3035 23 6 -1.9842 -7.1477 0.9178 24 8 -0.6500 -6.6131 0.8496 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5566 0.8902 28 1 2.8720 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8894 30 1 4.0141 -5.1329 0.0295 31 1 3.9358 -6.6015 1.0342 32 1 3.9598 -6.4755 -2.0177 33 1 5.2666 -7.0786 -0.9695 34 1 3.9507 -8.9614 -1.8821 35 1 3.7461 -8.8550 -0.1173 36 1 1.5695 -9.2133 -1.2692 37 1 1.8203 -7.7108 -2.1912 38 1 -0.1646 -6.4593 -1.1688 39 1 -2.5820 -7.5726 -1.1383 40 1 -2.6510 -8.9914 -0.0421 41 1 -2.1197 -7.7102 1.8416 42 1 -2.7177 -6.3441 0.8536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812492976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = -119.643877 kcal Electronic energy + Delta-G solvation = -23831.383982 eV Core-core repulsion = 20390.809963 eV Total energy + Delta-G solvation = -3440.574020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67650 -39.19857 -37.11531 -34.60641 -33.57928 -32.70408 -32.26933 -30.59867 -29.23185 -26.38919 -25.13943 -24.24159 -22.83538 -22.37877 -21.23115 -20.36015 -18.59042 -17.24588 -16.88880 -16.21360 -16.07404 -15.54268 -15.22833 -14.90257 -14.52425 -14.36693 -14.29592 -13.90614 -13.56084 -13.31497 -13.09044 -12.77632 -12.43710 -12.25832 -12.09757 -11.88817 -11.49007 -11.35869 -11.12591 -11.00857 -10.92848 -10.83802 -10.66269 -10.54429 -10.17856 -9.92845 -9.53193 -9.24666 -9.06296 -8.66606 -8.32302 -8.24627 -5.94081 -3.98007 3.12213 3.27799 3.33624 3.40797 3.44088 3.88024 4.04980 4.48980 4.68681 4.73599 4.79779 4.88265 4.93019 5.05549 5.19040 5.26155 5.35400 5.39787 5.41073 5.48897 5.53909 5.60956 5.71560 5.76475 5.79817 5.86933 5.90313 5.95197 6.00696 6.18443 6.25844 6.27273 6.35163 6.78817 6.95211 7.31195 7.77530 7.81426 7.90706 8.10419 8.41956 8.83941 9.10946 9.65370 11.16929 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.004918 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.021387 B = 5692.293619 C = 6990.944095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.126 4.126 11 C 0.502 3.498 12 O -0.498 6.498 13 N -0.621 5.621 14 C 0.111 3.889 15 C -0.138 4.138 16 C -0.117 4.117 17 C -0.123 4.123 18 C 0.150 3.850 19 H 0.076 0.924 20 C 0.245 3.755 21 O -0.391 6.391 22 C 0.021 3.979 23 C 0.015 3.985 24 O -0.340 6.340 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -19.345 -1.377 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.166 4.166 11 C 0.292 3.708 12 O -0.372 6.372 13 N -0.359 5.359 14 C -0.012 4.012 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.161 4.161 18 C 0.046 3.954 19 H 0.094 0.906 20 C 0.151 3.849 21 O -0.312 6.312 22 C -0.056 4.056 23 C -0.063 4.063 24 O -0.260 6.260 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.286 -19.254 -1.304 19.576 hybrid contribution 0.279 0.941 -0.011 0.981 sum 3.565 -18.313 -1.315 18.703 Atomic orbital electron populations 1.70011 1.06046 1.26386 1.50440 1.25018 0.94800 0.99177 0.95367 0.86556 0.80035 0.83934 0.77556 1.19750 1.21055 1.21044 1.21263 0.92927 0.91047 1.51066 0.92630 1.18894 0.93153 0.89325 0.98553 1.21866 1.00664 0.91983 1.02075 1.21639 0.88823 0.85366 0.74944 1.90748 1.13652 1.85635 1.47132 1.48288 1.06758 1.04895 1.75975 1.21688 0.79448 1.02042 0.97983 1.21959 1.00028 0.96077 0.99518 1.21501 0.94906 0.97015 1.02032 1.21821 0.95756 1.00480 0.98041 1.21084 0.89605 0.85640 0.99105 0.90604 1.24320 0.90157 0.80709 0.89764 1.89346 1.18899 1.35266 1.87688 1.24137 0.84401 0.99938 0.97161 1.23877 0.87348 0.96938 0.98091 1.89274 1.24708 1.68046 1.44009 0.93070 0.95971 0.95753 0.90477 0.90464 0.88788 0.91763 0.91229 0.90761 0.91603 0.91828 0.90217 0.91362 0.89346 0.91030 0.88204 0.91018 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.13 -2.62 3.98 -27.88 -0.11 -2.73 16 11 C 0.50 10.00 7.47 -10.99 -0.08 9.92 16 12 O -0.50 -11.52 10.15 -19.84 -0.20 -11.72 16 13 N -0.62 -9.69 2.97 -165.23 -0.49 -10.18 16 14 C 0.11 1.32 6.35 -3.71 -0.02 1.30 16 15 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 16 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 17 C -0.12 -1.42 5.05 -26.62 -0.13 -1.56 16 18 C 0.15 2.19 3.00 -67.61 -0.20 1.98 16 19 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.24 4.09 2.48 37.16 0.09 4.18 16 21 O -0.39 -5.74 10.72 -59.28 -0.64 -6.37 16 22 C 0.02 0.25 7.81 37.92 0.30 0.55 16 23 C 0.01 0.21 8.08 37.92 0.31 0.52 16 24 O -0.34 -6.41 8.40 -68.13 -0.57 -6.99 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.08 1.49 7.78 -51.93 -0.40 1.08 16 29 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 30 H 0.09 1.11 5.93 -51.93 -0.31 0.81 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.69 6.62 -51.93 -0.34 1.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -34.24 329.15 -8.83 -43.07 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.90 Total: -1.32 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.71 Total: -1.35 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.25 Total: -37.03 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.41 Total: -25.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.24 -8.83 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812492976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.569 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds