Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48492 * 109.47181 * 269.99796 * 3 2 1 5 5 H 1.48506 * 109.47078 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.47458 * 149.99500 * 3 2 1 7 7 C 1.37879 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46991 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00189 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99455 * 179.97438 * 11 10 9 14 14 C 1.46928 * 120.63488 * 353.89936 * 13 11 10 15 15 C 1.53624 * 108.54220 * 126.36608 * 14 13 11 16 16 C 1.53045 * 109.24278 * 54.86055 * 15 14 13 17 17 C 1.53043 * 109.53316 * 298.50720 * 16 15 14 18 18 C 1.46926 * 120.62998 * 174.17857 * 13 11 10 19 19 H 1.08999 * 109.58809 * 113.65361 * 18 13 11 20 20 C 1.53004 * 109.58520 * 353.37432 * 18 13 11 21 21 O 1.43754 * 109.63245 * 298.97380 * 20 18 13 22 22 C 1.44578 * 104.92203 * 215.70841 * 21 20 18 23 23 C 1.54916 * 101.63486 * 36.27145 * 22 21 20 24 24 O 1.43368 * 109.63269 * 179.76288 * 20 18 13 25 25 H 0.96990 * 120.00488 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47209 * 60.00421 * 9 7 2 27 27 H 1.08997 * 109.47802 * 299.99911 * 9 7 2 28 28 H 1.09001 * 109.46742 * 299.99926 * 10 9 7 29 29 H 1.08995 * 109.46694 * 59.99925 * 10 9 7 30 30 H 1.08998 * 109.58644 * 246.19906 * 14 13 11 31 31 H 1.09000 * 109.58398 * 6.62466 * 14 13 11 32 32 H 1.09002 * 109.63670 * 294.86254 * 15 14 13 33 33 H 1.09007 * 109.45463 * 174.74158 * 15 14 13 34 34 H 1.08997 * 109.45569 * 178.49031 * 16 15 14 35 35 H 1.09001 * 109.44887 * 58.52197 * 16 15 14 36 36 H 1.09000 * 109.49749 * 301.41330 * 17 16 15 37 37 H 1.09001 * 109.49103 * 181.31391 * 17 16 15 38 38 H 1.09002 * 109.62643 * 59.36518 * 20 18 13 39 39 H 1.09003 * 111.08992 * 278.16071 * 22 21 20 40 40 H 1.08996 * 110.98289 * 154.33120 * 22 21 20 41 41 H 1.09005 * 110.69465 * 205.95954 * 23 22 21 42 42 H 1.08991 * 110.84677 * 82.82513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9672 -0.0001 12 8 0.2792 -4.9672 -0.0010 13 7 2.1659 -6.1343 -0.0007 14 6 3.6289 -6.1539 -0.1352 15 6 4.2160 -6.9611 1.0327 16 6 3.5694 -8.3479 1.0628 17 6 2.0621 -8.2049 1.2862 18 6 1.4511 -7.4116 0.1269 19 1 1.5488 -7.9790 -0.7986 20 6 -0.0284 -7.1451 0.4113 21 8 -0.1603 -6.4232 1.6475 22 6 -1.3708 -6.9349 2.2501 23 6 -1.3121 -8.4298 1.8482 24 8 -0.7280 -8.3908 0.5305 25 1 -0.4850 0.8399 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8902 28 1 2.8721 -3.6042 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 3.9027 -6.6221 -1.0806 31 1 4.0123 -5.1340 -0.1055 32 1 4.0153 -6.4455 1.9718 33 1 5.2927 -7.0646 0.8975 34 1 4.0028 -8.9330 1.8738 35 1 3.7496 -8.8530 0.1139 36 1 1.8816 -7.6776 2.2230 37 1 1.6057 -9.1937 1.3309 38 1 -0.4580 -6.5601 -0.4020 39 1 -2.2528 -6.4520 1.8293 40 1 -1.3457 -6.8208 3.3338 41 1 -2.3136 -8.8589 1.8131 42 1 -0.6780 -8.9913 2.5342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812492977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = -118.854948 kcal Electronic energy + Delta-G solvation = -23991.403793 eV Core-core repulsion = 20550.863984 eV Total energy + Delta-G solvation = -3440.539809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80002 -39.15274 -37.06311 -34.68554 -33.55991 -32.67634 -32.16791 -30.56931 -29.28412 -26.41914 -25.11045 -24.22304 -23.10389 -22.25809 -21.32836 -20.22849 -18.51404 -17.34625 -16.94541 -16.29156 -15.95474 -15.62685 -15.22786 -14.79123 -14.46923 -14.39807 -14.13815 -13.93266 -13.63489 -13.28126 -13.14875 -12.85142 -12.42581 -12.33129 -12.10541 -11.99856 -11.52020 -11.18721 -11.11076 -11.05362 -10.90563 -10.85731 -10.65255 -10.55221 -10.00152 -9.90472 -9.60100 -9.43562 -9.05649 -8.48791 -8.31860 -8.25049 -5.93000 -3.96958 3.12316 3.32677 3.35020 3.41087 3.43761 3.81387 4.15014 4.49691 4.69375 4.72918 4.75271 4.82938 4.96812 5.02825 5.17823 5.26119 5.33506 5.42008 5.44207 5.50020 5.59251 5.68029 5.70527 5.72634 5.82893 5.92000 5.96378 5.98364 6.06153 6.16466 6.26467 6.30703 6.34739 6.80214 6.96112 7.32543 7.78329 7.83987 7.92343 8.11736 8.43113 8.84866 9.11771 9.66253 11.17978 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.004820 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.562445 B = 5807.229268 C = 6829.999092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.126 4.126 11 C 0.516 3.484 12 O -0.513 6.513 13 N -0.619 5.619 14 C 0.111 3.889 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.136 3.864 19 H 0.081 0.919 20 C 0.233 3.767 21 O -0.346 6.346 22 C 0.016 3.984 23 C 0.022 3.978 24 O -0.397 6.397 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -19.503 3.241 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.166 4.166 11 C 0.307 3.693 12 O -0.388 6.388 13 N -0.357 5.357 14 C -0.012 4.012 15 C -0.174 4.174 16 C -0.154 4.154 17 C -0.165 4.165 18 C 0.032 3.968 19 H 0.099 0.901 20 C 0.138 3.862 21 O -0.266 6.266 22 C -0.061 4.061 23 C -0.055 4.055 24 O -0.318 6.318 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.918 -19.345 3.162 19.990 hybrid contribution 0.478 0.837 0.168 0.979 sum 4.397 -18.508 3.330 19.313 Atomic orbital electron populations 1.69995 1.06039 1.26489 1.50359 1.25011 0.94796 0.99144 0.95369 0.86614 0.79797 0.83628 0.78036 1.20701 1.21260 1.19909 1.21228 0.92881 0.91083 1.51179 0.92710 1.18886 0.93139 0.89271 0.98558 1.21862 1.00662 0.92023 1.02033 1.21509 0.88483 0.85300 0.74054 1.90573 1.14216 1.85831 1.48209 1.48295 1.07024 1.05084 1.75249 1.21784 0.79655 1.02054 0.97755 1.22009 0.99695 0.96170 0.99572 1.21493 0.95294 0.96929 1.01711 1.21868 0.95467 1.00049 0.99122 1.21599 0.91013 0.85672 0.98549 0.90090 1.24721 0.91527 0.78581 0.91338 1.89352 1.41610 1.61358 1.34245 1.24228 0.89968 0.91956 0.99969 1.24099 0.99082 0.97445 0.84887 1.88879 1.70137 1.40549 1.32242 0.93019 0.95951 0.95743 0.90568 0.90402 0.91762 0.88848 0.91238 0.90967 0.91920 0.92011 0.90926 0.91116 0.86047 0.90819 0.88159 0.88902 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 10 C -0.13 -2.63 4.00 -27.88 -0.11 -2.74 16 11 C 0.52 10.25 7.14 -10.99 -0.08 10.17 16 12 O -0.51 -11.77 10.65 -18.92 -0.20 -11.98 16 13 N -0.62 -9.62 2.96 -164.96 -0.49 -10.11 16 14 C 0.11 1.32 6.38 -3.48 -0.02 1.30 16 15 C -0.14 -1.38 6.10 -26.38 -0.16 -1.54 16 16 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 17 C -0.13 -1.52 5.08 -26.61 -0.14 -1.65 16 18 C 0.14 1.95 3.02 -67.60 -0.20 1.75 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 20 C 0.23 3.83 2.76 37.16 0.10 3.93 16 21 O -0.35 -6.13 8.09 -67.74 -0.55 -6.68 16 22 C 0.02 0.21 7.95 38.17 0.30 0.51 16 23 C 0.02 0.24 8.07 38.17 0.31 0.55 16 24 O -0.40 -5.78 10.71 -59.05 -0.63 -6.41 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 29 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.12 5.93 -51.93 -0.31 0.82 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 37 H 0.07 0.79 7.89 -51.93 -0.41 0.38 16 38 H 0.12 2.36 6.03 -51.96 -0.31 2.04 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -33.94 328.41 -8.73 -42.68 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.84 Total: -0.53 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.69 Total: -1.82 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.25 Total: -37.00 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.38 Total: -25.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.94 -8.73 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812492977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.179 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds