Wall clock time and date at job start Tue Mar 31 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63351 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77755 * 233.58934 * 14 13 11 16 16 C 1.53042 * 109.31298 * 305.36822 * 15 14 13 17 17 C 1.53038 * 109.54053 * 61.36287 * 16 15 14 18 18 H 1.09002 * 109.49652 * 58.58609 * 17 16 15 19 19 C 1.52997 * 109.49519 * 178.65295 * 17 16 15 20 20 O 1.43750 * 109.63507 * 299.36190 * 19 17 16 21 21 C 1.44784 * 104.82056 * 215.80932 * 20 19 17 22 22 C 1.54917 * 101.71814 * 36.10136 * 21 20 19 23 23 O 1.43373 * 109.62890 * 179.97438 * 19 17 16 24 24 C 1.46924 * 120.62710 * 179.72155 * 13 11 10 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 1.08999 * 109.58150 * 353.37797 * 14 13 11 31 31 H 1.08997 * 109.58628 * 113.79892 * 14 13 11 32 32 H 1.09001 * 109.49701 * 65.31552 * 15 14 13 33 33 H 1.08995 * 109.49952 * 185.41163 * 15 14 13 34 34 H 1.08995 * 109.46123 * 181.38975 * 16 15 14 35 35 H 1.09006 * 109.45184 * 301.34041 * 16 15 14 36 36 H 1.09003 * 109.62981 * 59.61132 * 19 17 16 37 37 H 1.08999 * 110.97814 * 278.00085 * 21 20 19 38 38 H 1.08997 * 110.97684 * 154.20861 * 21 20 19 39 39 H 1.09000 * 110.69701 * 206.04124 * 22 21 20 40 40 H 1.08999 * 110.69165 * 82.83685 * 22 21 20 41 41 H 1.09005 * 109.58736 * 246.19378 * 24 13 11 42 42 H 1.09000 * 109.59014 * 6.62371 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9671 -0.0010 13 7 2.1658 -6.1343 0.0003 14 6 3.6350 -6.1505 0.0008 15 6 4.1190 -7.0170 -1.1661 16 6 3.4751 -8.4019 -1.0693 17 6 1.9537 -8.2671 -1.1663 18 1 1.6904 -7.7873 -2.1090 19 6 1.3130 -9.6550 -1.1032 20 8 1.7798 -10.4531 -2.2039 21 6 0.6400 -11.2599 -2.5859 22 6 -0.5338 -10.2756 -2.3551 23 8 -0.1126 -9.5319 -1.1933 24 6 1.4452 -7.4147 0.0058 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8906 30 1 4.0115 -5.1345 -0.1176 31 1 3.9954 -6.5687 0.9406 32 1 3.8353 -6.5490 -2.1088 33 1 5.2034 -7.1159 -1.1205 34 1 3.8368 -9.0284 -1.8845 35 1 3.7391 -8.8591 -0.1156 36 1 1.5797 -10.1390 -0.1636 37 1 0.5478 -12.1347 -1.9422 38 1 0.7031 -11.5532 -3.6338 39 1 -1.4570 -10.8180 -2.1512 40 1 -0.6559 -9.6140 -3.2127 41 1 1.6305 -7.9342 0.9460 42 1 0.3766 -7.2332 -0.1093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812494088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:55 Heat of formation + Delta-G solvation = -143.723496 kcal Electronic energy + Delta-G solvation = -22904.201725 eV Core-core repulsion = 19462.583535 eV Total energy + Delta-G solvation = -3441.618190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85052 -39.67364 -37.21743 -35.31833 -33.82515 -33.32260 -31.76739 -30.80124 -29.49234 -26.07543 -25.32622 -24.25662 -23.55817 -22.13747 -21.78871 -20.44666 -18.58235 -17.55157 -17.24572 -16.93472 -16.33214 -15.91189 -15.42859 -15.14178 -15.03581 -14.32206 -14.23368 -13.88719 -13.68429 -13.46495 -13.30766 -13.16857 -12.97914 -12.55391 -12.15413 -12.10513 -11.91151 -11.53280 -11.42246 -11.09412 -10.97752 -10.79671 -10.63499 -10.59240 -10.10219 -10.07785 -9.86507 -9.82192 -9.18402 -8.49720 -8.43249 -8.25133 -6.28841 -3.98759 2.97318 3.18767 3.30125 3.46935 3.49591 3.68355 3.69204 4.19815 4.47987 4.55088 4.57943 4.59862 4.69945 4.75613 4.90286 5.02654 5.10318 5.12694 5.24313 5.30524 5.35883 5.43292 5.48830 5.52216 5.56606 5.69263 5.75641 5.92483 5.94880 6.08968 6.13198 6.14829 6.21353 6.68153 6.72896 6.81693 7.55933 7.61186 7.72527 8.22974 8.52786 8.69838 8.95400 9.75011 11.12157 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.003329 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.834849 B = 8410.061883 C = 8978.073119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.608 4.608 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.623 5.623 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.113 4.113 18 H 0.084 0.916 19 C 0.240 3.760 20 O -0.375 6.375 21 C 0.016 3.984 22 C 0.020 3.980 23 O -0.378 6.378 24 C 0.123 3.877 25 H 0.272 0.728 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -24.692 -3.806 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.646 4.646 8 H 0.067 0.933 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.359 5.359 14 C -0.017 4.017 15 C -0.172 4.172 16 C -0.146 4.146 17 C -0.133 4.133 18 H 0.103 0.897 19 C 0.145 3.855 20 O -0.296 6.296 21 C -0.060 4.060 22 C -0.056 4.056 23 O -0.299 6.299 24 C 0.000 4.000 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.228 -22.888 -3.745 24.014 hybrid contribution 0.272 -1.996 -0.109 2.018 sum 6.499 -24.885 -3.855 26.007 Atomic orbital electron populations 1.70732 1.06910 1.31007 1.46043 1.25849 0.96586 1.02671 0.93867 0.83539 0.74846 0.75382 0.76393 1.20781 1.21477 1.21489 1.22029 0.94124 0.92019 1.56449 0.93298 1.19026 0.93852 0.91172 0.97296 1.21731 1.00403 0.91457 1.02461 1.21570 0.88396 0.85508 0.74257 1.90649 1.14437 1.87194 1.48806 1.48242 1.06541 1.05684 1.75418 1.21739 0.80004 1.01799 0.98173 1.21917 1.00360 0.95544 0.99422 1.21449 0.93338 0.97379 1.02463 1.22014 0.96122 0.93920 1.01250 0.89720 1.24056 0.79422 0.91477 0.90560 1.89231 1.34166 1.54798 1.51359 1.24397 0.84317 0.94712 1.02619 1.24216 0.98519 0.93502 0.89403 1.88967 1.20903 1.73905 1.46157 1.21394 0.98894 0.83669 0.96062 0.91717 0.96734 0.96776 0.90138 0.90117 0.88944 0.91631 0.91272 0.90476 0.90934 0.91736 0.89715 0.90601 0.87347 0.88136 0.90492 0.92026 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.27 13.65 55.43 0.76 -28.51 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.61 -17.78 9.11 -34.44 -0.31 -18.10 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 9 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.57 3.99 -27.89 -0.11 -2.68 16 11 C 0.51 10.54 7.70 -10.99 -0.08 10.46 16 12 O -0.54 -13.22 15.39 5.56 0.09 -13.14 16 13 N -0.62 -9.81 2.97 -172.52 -0.51 -10.32 16 14 C 0.11 1.26 6.34 -3.71 -0.02 1.24 16 15 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 16 C -0.11 -1.07 5.05 -26.69 -0.13 -1.20 16 17 C -0.11 -1.35 2.37 -90.29 -0.21 -1.56 16 18 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.24 2.58 3.50 37.16 0.13 2.71 16 20 O -0.38 -3.82 10.69 -59.03 -0.63 -4.45 16 21 C 0.02 0.11 7.95 38.17 0.30 0.41 16 22 C 0.02 0.16 8.08 38.17 0.31 0.47 16 23 O -0.38 -4.52 10.69 -59.03 -0.63 -5.15 16 24 C 0.12 1.75 5.52 -3.50 -0.02 1.73 16 25 H 0.27 8.89 7.22 -40.82 -0.29 8.60 16 26 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 27 H 0.01 0.42 7.97 -51.93 -0.41 0.00 16 28 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 29 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 30 H 0.09 1.11 5.93 -51.93 -0.31 0.80 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.69 6.75 -51.93 -0.35 1.34 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -36.12 335.76 -8.32 -44.43 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.84 Total: -1.47 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.52 Total: -7.13 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.24 Total: -38.83 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.18 Total: -22.74 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.12 -8.32 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812494088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.289 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds