Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99692 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.46920 * 120.63050 * 359.71661 * 13 11 10 15 15 C 1.53621 * 108.54355 * 126.37111 * 14 13 11 16 16 C 1.53043 * 109.24177 * 54.85891 * 15 14 13 17 17 C 1.53049 * 109.53527 * 298.50995 * 16 15 14 18 18 H 1.08997 * 109.49763 * 301.41861 * 17 16 15 19 19 C 1.52998 * 109.49547 * 181.31376 * 17 16 15 20 20 O 1.43746 * 109.63421 * 299.07391 * 19 17 16 21 21 C 1.44588 * 104.91836 * 215.71034 * 20 19 17 22 22 C 1.54920 * 101.63524 * 36.26524 * 21 20 19 23 23 O 1.43364 * 109.62748 * 179.85449 * 19 17 16 24 24 C 1.46923 * 120.62891 * 180.02562 * 13 11 10 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 27 27 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 28 28 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 29 29 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 30 30 H 1.09003 * 109.58949 * 246.21035 * 14 13 11 31 31 H 1.09006 * 109.58937 * 6.63210 * 14 13 11 32 32 H 1.08999 * 109.63648 * 294.86515 * 15 14 13 33 33 H 1.09005 * 109.43494 * 174.72646 * 15 14 13 34 34 H 1.08996 * 109.45823 * 178.49023 * 16 15 14 35 35 H 1.08997 * 109.45140 * 58.52067 * 16 15 14 36 36 H 1.09002 * 109.62357 * 59.46546 * 19 17 16 37 37 H 1.09002 * 111.08710 * 278.15759 * 21 20 19 38 38 H 1.09003 * 110.97943 * 154.32877 * 21 20 19 39 39 H 1.08994 * 110.69216 * 205.96125 * 22 21 20 40 40 H 1.09001 * 110.84207 * 82.82797 * 22 21 20 41 41 H 1.08998 * 109.58857 * 353.36937 * 24 13 11 42 42 H 1.09004 * 109.58487 * 113.65142 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0026 13 7 6.2022 -3.8040 -0.0028 14 6 5.4816 -5.0844 0.0039 15 6 5.9887 -5.9366 -1.1694 16 6 7.5101 -6.0716 -1.0741 17 6 8.1540 -4.6866 -1.1716 18 1 7.8692 -4.2185 -2.1139 19 6 9.6764 -4.8256 -1.1092 20 8 10.0560 -5.4211 0.1428 21 6 11.2998 -4.7761 0.4998 22 6 11.0587 -3.3314 -0.0048 23 8 10.2826 -3.5299 -1.2037 24 6 7.6713 -3.8202 -0.0035 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 -0.8911 27 1 3.8751 -0.6805 0.8889 28 1 3.6583 -3.1503 0.8892 29 1 3.6577 -3.1507 -0.8908 30 1 5.6681 -5.6038 0.9439 31 1 4.4128 -4.9028 -0.1097 32 1 5.7243 -5.4568 -2.1117 33 1 5.5321 -6.9253 -1.1234 34 1 7.8709 -6.6980 -1.8899 35 1 7.7750 -6.5288 -0.1208 36 1 10.0208 -5.4520 -1.9321 37 1 12.1422 -5.2348 -0.0180 38 1 11.4521 -4.7922 1.5790 39 1 12.0044 -2.8409 -0.2349 40 1 10.4950 -2.7537 0.7278 41 1 8.0479 -2.8043 -0.1219 42 1 8.0326 -4.2365 0.9370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812494089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = -135.856692 kcal Electronic energy + Delta-G solvation = -23151.205680 eV Core-core repulsion = 19709.928620 eV Total energy + Delta-G solvation = -3441.277060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96006 -39.61864 -37.17910 -35.30371 -33.60303 -33.23081 -31.70045 -31.18017 -29.57795 -26.71725 -25.30308 -24.67619 -23.58512 -22.15241 -21.30880 -20.09661 -18.55223 -17.58022 -17.31139 -16.88165 -16.35680 -16.13895 -15.28768 -15.17071 -14.86286 -14.37356 -14.21211 -14.08515 -13.86511 -13.46064 -13.29437 -13.10875 -12.90249 -12.51301 -12.45459 -12.21978 -11.99102 -11.44827 -11.34549 -11.03716 -11.02623 -10.92141 -10.63906 -10.56295 -10.08540 -9.98518 -9.88430 -9.74882 -9.18237 -9.07816 -8.48899 -8.39944 -6.00589 -3.98980 3.09491 3.14355 3.25362 3.40343 3.46639 3.58307 3.66811 4.21708 4.48703 4.52652 4.53680 4.58514 4.72467 4.77321 4.87929 5.04652 5.08822 5.20133 5.22114 5.33128 5.35105 5.40204 5.43801 5.56617 5.59064 5.76257 5.77330 5.86629 5.91895 6.04449 6.10740 6.12862 6.23048 6.67266 6.74006 6.78287 7.40504 7.47264 7.70803 7.82860 8.52600 8.68469 9.02521 9.62797 11.12269 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.003823 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.743728 B = 7322.880224 C = 8094.481665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.540 6.540 13 N -0.623 5.623 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.114 4.114 18 H 0.092 0.908 19 C 0.241 3.759 20 O -0.373 6.373 21 C 0.016 3.984 22 C 0.019 3.981 23 O -0.380 6.380 24 C 0.122 3.878 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.514 -15.331 -0.499 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.417 6.417 13 N -0.358 5.358 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.147 4.147 17 C -0.134 4.134 18 H 0.110 0.890 19 C 0.145 3.855 20 O -0.293 6.293 21 C -0.060 4.060 22 C -0.058 4.058 23 O -0.301 6.301 24 C -0.001 4.001 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.517 -14.645 -0.547 26.867 hybrid contribution 0.529 0.755 -0.025 0.922 sum 23.047 -13.890 -0.572 26.915 Atomic orbital electron populations 1.69917 1.06283 1.26930 1.51196 1.24969 0.94705 0.99219 0.94351 0.86798 0.80630 0.83397 0.78758 1.20239 1.21452 1.18535 1.21116 0.89277 0.94540 1.51211 0.90946 1.19379 0.96378 0.90274 0.97634 1.21682 0.88127 1.03133 1.03063 1.21556 0.91575 0.82374 0.74230 1.90635 1.70709 1.31076 1.49239 1.48247 1.06020 1.06363 1.75168 1.21832 0.97679 0.84035 0.98167 1.21995 0.95544 1.00367 0.99371 1.21452 0.95240 0.95256 1.02704 1.22020 0.92384 0.97785 1.01217 0.89001 1.24091 0.92834 0.81469 0.87103 1.89200 1.38750 1.62341 1.39039 1.24354 0.87694 0.91262 1.02694 1.24229 0.96676 0.97295 0.87552 1.88934 1.66202 1.35128 1.39868 1.21378 0.80495 1.01290 0.96911 0.92751 0.96310 0.95851 0.89668 0.89695 0.91569 0.88802 0.91218 0.90476 0.91740 0.90913 0.89638 0.90682 0.87307 0.88246 0.90298 0.89010 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.43 3.98 -27.88 -0.11 -2.54 16 11 C 0.51 10.02 7.70 -10.98 -0.08 9.94 16 12 O -0.54 -12.65 15.39 5.56 0.09 -12.56 16 13 N -0.62 -9.46 2.97 -172.48 -0.51 -9.98 16 14 C 0.11 1.23 6.37 -3.49 -0.02 1.21 16 15 C -0.13 -1.28 6.10 -26.39 -0.16 -1.45 16 16 C -0.11 -1.01 5.01 -26.68 -0.13 -1.15 16 17 C -0.11 -1.29 2.45 -90.47 -0.22 -1.51 16 18 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.24 2.44 3.66 37.16 0.14 2.58 16 20 O -0.37 -3.63 9.95 -59.05 -0.59 -4.21 16 21 C 0.02 0.11 7.95 38.17 0.30 0.42 16 22 C 0.02 0.15 8.07 38.17 0.31 0.46 16 23 O -0.38 -4.35 10.68 -59.05 -0.63 -4.99 16 24 C 0.12 1.69 5.41 -3.69 -0.02 1.67 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.02 0.50 7.53 -51.93 -0.39 0.10 16 27 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 29 H 0.08 1.59 7.70 -51.93 -0.40 1.19 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.51 6.74 -51.93 -0.35 1.16 16 42 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -35.28 332.33 -7.90 -43.18 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.84 Total: -3.21 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.53 Total: -4.00 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.26 Total: -37.51 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.13 Total: -21.76 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.28 -7.90 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812494089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.677 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds