Wall clock time and date at job start Tue Mar 31 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47148 * 300.00044 * 3 2 1 6 6 H 1.48502 * 109.47132 * 59.99948 * 3 2 1 7 7 C 1.37878 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47526 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99491 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00221 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00066 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47075 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.84324 * 308.74352 * 15 14 13 17 17 C 1.54983 * 110.95433 * 185.00172 * 15 14 13 18 18 O 1.44437 * 103.10318 * 206.78572 * 17 15 14 19 19 C 1.42509 * 106.85820 * 21.40232 * 18 17 15 20 20 C 1.54112 * 110.90039 * 237.58506 * 19 18 17 21 21 C 1.54396 * 104.15140 * 277.97265 * 20 19 18 22 22 C 1.53937 * 106.62688 * 337.12905 * 21 20 19 23 23 C 1.54112 * 110.91075 * 122.97977 * 19 18 17 24 24 O 1.42886 * 109.85723 * 0.27289 * 19 18 17 25 25 H 0.96992 * 120.00418 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46955 * 60.00264 * 9 7 2 27 27 H 1.08995 * 109.47349 * 300.00286 * 9 7 2 28 28 H 1.08999 * 109.47158 * 60.00299 * 10 9 7 29 29 H 1.09005 * 109.46914 * 300.00422 * 10 9 7 30 30 H 0.97010 * 120.00218 * 359.97438 * 13 11 10 31 31 H 1.08994 * 109.47337 * 60.00099 * 14 13 11 32 32 H 1.09005 * 109.47202 * 299.99824 * 14 13 11 33 33 H 1.09006 * 110.69179 * 88.37458 * 17 15 14 34 34 H 1.09008 * 110.83456 * 325.25544 * 17 15 14 35 35 H 1.09005 * 110.49679 * 159.30333 * 20 19 18 36 36 H 1.09003 * 110.49314 * 36.63919 * 20 19 18 37 37 H 1.09001 * 110.02800 * 217.83905 * 21 20 19 38 38 H 1.08999 * 110.02707 * 96.42120 * 21 20 19 39 39 H 1.09004 * 110.02116 * 119.29811 * 22 21 20 40 40 H 1.08996 * 110.02405 * 240.66547 * 22 21 20 41 41 H 1.09003 * 110.49324 * 323.35810 * 23 19 18 42 42 H 1.09004 * 110.60683 * 200.74948 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 0.0004 16 1 3.1649 -8.4467 -0.7937 17 6 1.6921 -9.9243 -0.1258 18 8 2.5964 -10.8475 0.5192 19 6 3.4323 -10.0757 1.3773 20 6 4.9185 -10.2740 1.0209 21 6 5.3044 -11.5901 1.7301 22 6 4.3000 -11.7812 2.8809 23 6 3.3374 -10.5750 2.8323 24 8 3.0726 -8.6955 1.2925 25 1 -0.4850 0.8399 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6044 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 3.1359 -6.1343 -0.0004 31 1 0.8070 -7.4610 -0.8909 32 1 0.8064 -7.4607 0.8890 33 1 1.5522 -10.1906 -1.1736 34 1 0.7345 -9.8964 0.3942 35 1 5.5161 -9.4458 1.4018 36 1 5.0426 -10.3711 -0.0576 37 1 6.3171 -11.5173 2.1268 38 1 5.2355 -12.4244 1.0321 39 1 3.7441 -12.7083 2.7409 40 1 4.8257 -11.8019 3.8355 41 1 2.3194 -10.8896 3.0621 42 1 3.6621 -9.7994 3.5260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812542004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:51 Heat of formation + Delta-G solvation = -147.332452 kcal Electronic energy + Delta-G solvation = -22207.288864 eV Core-core repulsion = 18765.514178 eV Total energy + Delta-G solvation = -3441.774686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23037 -39.10527 -37.01941 -35.52841 -34.40591 -33.43461 -31.34204 -30.48195 -29.22251 -27.35511 -26.32251 -24.95271 -22.40687 -21.48170 -20.97059 -20.72699 -19.59882 -17.77680 -17.12498 -16.74411 -16.11151 -15.92539 -15.60278 -15.16133 -14.98176 -14.82612 -14.40629 -14.06381 -13.68264 -13.48885 -13.03456 -12.94395 -12.70249 -12.39337 -12.19295 -12.05115 -11.88144 -11.62968 -11.53424 -11.51812 -11.13978 -10.93670 -10.83050 -10.57026 -10.46778 -9.94952 -9.80881 -9.66178 -9.17982 -9.00972 -8.83951 -8.31370 -5.95292 -3.99529 2.99797 3.24943 3.33271 3.36507 3.40911 3.44302 3.55750 4.11831 4.20096 4.30670 4.43743 4.48730 4.56208 4.60455 4.95060 5.03938 5.09913 5.13328 5.23676 5.24797 5.29028 5.39740 5.44742 5.54566 5.57194 5.60558 5.69920 5.74612 5.82188 5.83223 5.97745 6.24049 6.26243 6.64496 6.84376 6.90463 7.75715 7.85623 7.87481 8.08224 8.39731 8.76339 9.09288 9.64003 11.15768 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034706 B = 0.002674 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.581449 B =10470.496078 C =10914.655388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.535 6.535 13 N -0.741 5.741 14 C 0.128 3.872 15 C 0.035 3.965 16 H 0.093 0.907 17 C 0.028 3.972 18 O -0.367 6.367 19 C 0.249 3.751 20 C -0.144 4.144 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.127 4.127 24 O -0.356 6.356 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.400 0.600 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.981 -25.608 1.698 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.396 5.396 14 C 0.004 3.996 15 C -0.023 4.023 16 H 0.111 0.889 17 C -0.049 4.049 18 O -0.287 6.287 19 C 0.172 3.828 20 C -0.182 4.182 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.165 4.165 24 O -0.276 6.276 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.974 -25.545 1.842 27.138 hybrid contribution 0.884 0.926 -0.131 1.287 sum 9.858 -24.618 1.711 26.574 Atomic orbital electron populations 1.70005 1.06057 1.26467 1.50343 1.25032 0.94831 0.99254 0.95338 0.86533 0.80006 0.83828 0.77572 1.19748 1.21025 1.21024 1.21263 0.92974 0.91003 1.51184 0.92545 1.18908 0.93192 0.89393 0.98633 1.21864 1.00721 0.91789 1.02551 1.21584 0.88640 0.85572 0.74263 1.90673 1.14459 1.87628 1.48278 1.46115 1.10184 1.05132 1.78181 1.21195 0.93278 0.81688 1.03438 1.24286 0.95092 0.96028 0.86859 0.88936 1.24225 0.94106 0.86902 0.99699 1.88825 1.48779 1.31440 1.59698 1.23760 0.90445 0.77069 0.91546 1.22859 0.94718 0.99059 1.01586 1.22047 0.99119 0.97138 0.97391 1.22072 0.96820 0.98043 0.98797 1.22542 1.01100 0.98499 0.94376 1.89269 1.78002 1.24877 1.35458 0.93010 0.95809 0.95809 0.90159 0.90221 0.76609 0.89877 0.90556 0.87750 0.89907 0.89452 0.90697 0.91397 0.91407 0.91343 0.91304 0.90355 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.80 16 11 C 0.51 9.88 7.83 -10.99 -0.09 9.79 16 12 O -0.54 -12.64 15.98 5.55 0.09 -12.55 16 13 N -0.74 -10.47 5.56 -60.29 -0.33 -10.81 16 14 C 0.13 1.54 5.44 -4.04 -0.02 1.52 16 15 C 0.03 0.33 3.57 -25.68 -0.09 0.24 16 16 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 17 C 0.03 0.23 7.55 38.20 0.29 0.52 16 18 O -0.37 -3.72 10.99 -59.02 -0.65 -4.37 16 19 C 0.25 2.45 1.21 -25.57 -0.03 2.42 16 20 C -0.14 -1.20 6.27 -25.42 -0.16 -1.36 16 21 C -0.12 -0.85 6.81 -25.51 -0.17 -1.02 16 22 C -0.12 -0.87 6.81 -25.51 -0.17 -1.04 16 23 C -0.13 -1.13 6.27 -25.42 -0.16 -1.29 16 24 O -0.36 -4.00 10.83 -59.02 -0.64 -4.64 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.64 8.47 -40.82 -0.35 4.29 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.67 8.03 -51.92 -0.42 0.25 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -34.71 346.49 -8.96 -43.67 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.06 Total: -0.48 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.30 Total: -5.92 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.40 Total: -37.68 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.20 Total: -21.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.71 -8.96 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812542004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.664 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds