Wall clock time and date at job start Tue Mar 31 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48506 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47148 * 300.00044 * 3 2 1 6 6 H 1.48502 * 109.47132 * 59.99948 * 3 2 1 7 7 C 1.37878 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47526 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99491 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00221 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00066 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47075 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.84324 * 308.74352 * 15 14 13 17 17 C 1.54983 * 110.95433 * 185.00172 * 15 14 13 18 18 O 1.44437 * 103.10318 * 206.78572 * 17 15 14 19 19 C 1.42509 * 106.85820 * 21.40232 * 18 17 15 20 20 C 1.54112 * 110.90039 * 237.58506 * 19 18 17 21 21 C 1.54396 * 104.15140 * 277.97265 * 20 19 18 22 22 C 1.53937 * 106.62688 * 337.12905 * 21 20 19 23 23 C 1.54112 * 110.91075 * 122.97977 * 19 18 17 24 24 O 1.42886 * 109.85723 * 0.27289 * 19 18 17 25 25 H 0.96992 * 120.00418 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46955 * 60.00264 * 9 7 2 27 27 H 1.08995 * 109.47349 * 300.00286 * 9 7 2 28 28 H 1.08999 * 109.47158 * 60.00299 * 10 9 7 29 29 H 1.09005 * 109.46914 * 300.00422 * 10 9 7 30 30 H 0.97010 * 120.00218 * 359.97438 * 13 11 10 31 31 H 1.08994 * 109.47337 * 60.00099 * 14 13 11 32 32 H 1.09005 * 109.47202 * 299.99824 * 14 13 11 33 33 H 1.09006 * 110.69179 * 88.37458 * 17 15 14 34 34 H 1.09008 * 110.83456 * 325.25544 * 17 15 14 35 35 H 1.09005 * 110.49679 * 159.30333 * 20 19 18 36 36 H 1.09003 * 110.49314 * 36.63919 * 20 19 18 37 37 H 1.09001 * 110.02800 * 217.83905 * 21 20 19 38 38 H 1.08999 * 110.02707 * 96.42120 * 21 20 19 39 39 H 1.09004 * 110.02116 * 119.29811 * 22 21 20 40 40 H 1.08996 * 110.02405 * 240.66547 * 22 21 20 41 41 H 1.09003 * 110.49324 * 323.35810 * 23 19 18 42 42 H 1.09004 * 110.60683 * 200.74948 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 6 2.4277 -8.5660 0.0004 16 1 3.1649 -8.4467 -0.7937 17 6 1.6921 -9.9243 -0.1258 18 8 2.5964 -10.8475 0.5192 19 6 3.4323 -10.0757 1.3773 20 6 4.9185 -10.2740 1.0209 21 6 5.3044 -11.5901 1.7301 22 6 4.3000 -11.7812 2.8809 23 6 3.3374 -10.5750 2.8323 24 8 3.0726 -8.6955 1.2925 25 1 -0.4850 0.8399 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6044 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 3.1359 -6.1343 -0.0004 31 1 0.8070 -7.4610 -0.8909 32 1 0.8064 -7.4607 0.8890 33 1 1.5522 -10.1906 -1.1736 34 1 0.7345 -9.8964 0.3942 35 1 5.5161 -9.4458 1.4018 36 1 5.0426 -10.3711 -0.0576 37 1 6.3171 -11.5173 2.1268 38 1 5.2355 -12.4244 1.0321 39 1 3.7441 -12.7083 2.7409 40 1 4.8257 -11.8019 3.8355 41 1 2.3194 -10.8896 3.0621 42 1 3.6621 -9.7994 3.5260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812542004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:51 Heat of formation + Delta-G solvation = -171.767098 kcal Electronic energy + Delta-G solvation = -22208.348430 eV Core-core repulsion = 18765.514178 eV Total energy + Delta-G solvation = -3442.834252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97979 -40.61600 -37.74777 -36.37241 -35.67156 -35.44964 -33.11211 -31.68103 -29.84369 -28.39248 -27.60140 -26.31185 -23.68705 -22.93718 -21.72758 -21.37387 -21.07917 -18.85304 -18.52370 -17.82560 -17.34710 -17.14894 -16.73223 -16.42406 -16.37894 -15.87691 -15.63524 -14.94564 -14.83924 -14.59790 -14.22245 -14.11571 -13.98886 -13.63569 -13.24694 -13.22506 -13.08847 -12.83424 -12.78132 -12.44764 -12.26423 -12.16792 -12.12286 -11.92370 -11.63750 -11.41694 -11.28424 -11.16428 -10.76382 -10.57841 -10.50834 -10.14101 -8.17953 -6.31825 1.42537 1.43950 1.57278 1.69364 2.13256 2.29660 2.44344 2.83379 3.15164 3.38613 3.55757 3.59652 3.64724 3.84188 4.01173 4.07362 4.28365 4.34403 4.43219 4.47709 4.51262 4.53560 4.56798 4.63565 4.67824 4.72265 4.85961 4.93846 4.98834 5.00787 5.08518 5.18881 5.22093 5.38778 5.42064 5.51327 5.63834 5.85965 6.12212 6.18113 6.55399 6.86916 7.30852 7.38506 8.95019 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034706 B = 0.002674 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.581449 B =10470.496078 C =10914.655388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.717 5.717 14 C 0.127 3.873 15 C 0.043 3.957 16 H 0.114 0.886 17 C 0.026 3.974 18 O -0.377 6.377 19 C 0.241 3.759 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.132 4.132 24 O -0.376 6.376 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.019 1.019 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.416 0.584 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -26.319 1.317 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.301 3.699 12 O -0.468 6.468 13 N -0.371 5.371 14 C 0.004 3.996 15 C -0.015 4.015 16 H 0.131 0.869 17 C -0.050 4.050 18 O -0.298 6.298 19 C 0.164 3.836 20 C -0.181 4.181 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.170 4.170 24 O -0.297 6.297 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.000 1.000 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.253 0.747 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.814 -26.308 1.461 28.876 hybrid contribution -0.016 1.075 0.006 1.075 sum 11.797 -25.233 1.467 27.893 Atomic orbital electron populations 1.70179 1.08308 1.27752 1.51587 1.26147 0.95741 1.03980 0.94682 0.85265 0.79303 0.78070 0.77548 1.17603 1.20565 1.20692 1.21749 0.94006 0.91613 1.50594 0.90609 1.18701 0.93734 0.92466 0.94758 1.21634 0.99332 0.90056 1.04872 1.21316 0.87798 0.86674 0.74090 1.90660 1.16583 1.88375 1.51140 1.45813 1.11007 1.04502 1.75748 1.21305 0.93870 0.81371 1.03100 1.24264 0.94967 0.95286 0.86941 0.86883 1.24354 0.93607 0.85957 1.01092 1.88814 1.49170 1.31955 1.59878 1.23980 0.91273 0.76388 0.91970 1.22861 0.93520 0.99700 1.01979 1.22064 0.99701 0.96546 0.97221 1.22076 0.96601 0.97177 0.99618 1.22592 1.01233 0.99143 0.94049 1.89246 1.78272 1.25889 1.36289 0.92852 0.99724 1.00036 0.88000 0.87509 0.74663 0.89047 0.92231 0.85189 0.90012 0.89369 0.90325 0.90078 0.91219 0.91314 0.90099 0.91058 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.51 19.80 7.83 87.66 0.69 20.49 16 12 O -0.59 -28.76 15.98 -3.05 -0.05 -28.81 16 13 N -0.72 -19.22 5.56 -463.07 -2.57 -21.80 16 14 C 0.13 2.93 5.44 86.38 0.47 3.40 16 15 C 0.04 0.73 3.57 31.27 0.11 0.84 16 16 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 17 C 0.03 0.40 7.55 72.66 0.55 0.94 16 18 O -0.38 -7.04 10.99 -126.23 -1.39 -8.43 16 19 C 0.24 4.39 1.21 31.35 0.04 4.43 16 20 C -0.14 -2.08 6.27 31.44 0.20 -1.89 16 21 C -0.12 -1.42 6.81 31.38 0.21 -1.21 16 22 C -0.12 -1.51 6.81 31.39 0.21 -1.29 16 23 C -0.13 -2.24 6.27 31.45 0.20 -2.04 16 24 O -0.38 -7.92 10.83 -126.23 -1.37 -9.29 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.02 -0.99 8.10 -2.38 -0.02 -1.01 16 27 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 28 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 30 H 0.42 8.56 8.47 -92.70 -0.79 7.78 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.23 8.03 -2.38 -0.02 1.21 16 35 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -77.75 346.49 0.81 -76.94 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.21 Total: 13.77 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 3.67 Total: -9.32 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.29 Total: -81.37 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -2.80 Total: -46.53 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -77.75 0.81 -76.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812542004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.830 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds