Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47166 * 35.00136 * 14 13 11 16 16 C 1.52997 * 109.46955 * 274.99660 * 14 13 11 17 17 C 1.52991 * 109.51485 * 179.85845 * 16 14 13 18 18 C 1.53019 * 109.47434 * 60.13417 * 17 16 14 19 19 C 1.52953 * 109.43626 * 300.22856 * 18 17 16 20 20 C 1.52967 * 109.82166 * 59.68234 * 19 18 17 21 21 O 1.43712 * 109.41659 * 299.58946 * 19 18 17 22 22 C 1.44787 * 104.79424 * 215.84577 * 21 19 18 23 23 C 1.54919 * 101.72499 * 36.06661 * 22 21 19 24 24 O 1.43297 * 109.68149 * 180.24884 * 19 18 17 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 30 30 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46043 * 299.86739 * 16 14 13 32 32 H 1.08993 * 109.46776 * 59.83940 * 16 14 13 33 33 H 1.08996 * 109.47334 * 180.13735 * 17 16 14 34 34 H 1.08999 * 109.46930 * 300.13556 * 17 16 14 35 35 H 1.09001 * 109.47765 * 60.21179 * 18 17 16 36 36 H 1.08996 * 109.48113 * 180.23833 * 18 17 16 37 37 H 1.09004 * 109.47774 * 180.31273 * 20 19 18 38 38 H 1.09002 * 109.47496 * 60.29391 * 20 19 18 39 39 H 1.08998 * 110.98113 * 277.96076 * 22 21 19 40 40 H 1.08996 * 110.98008 * 154.17016 * 22 21 19 41 41 H 1.09006 * 110.69377 * 206.07683 * 23 22 21 42 42 H 1.08992 * 110.69629 * 82.87581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 1.4328 -7.4032 0.0019 15 1 0.5225 -7.2971 -0.5880 16 6 1.0684 -7.7816 1.4388 17 6 0.3003 -9.1046 1.4398 18 6 1.1757 -10.2032 0.8330 19 6 1.5466 -9.8242 -0.6017 20 6 2.3104 -8.4988 -0.6070 21 8 0.3492 -9.6882 -1.3847 22 6 0.7065 -10.1870 -2.6961 23 6 1.6681 -11.3483 -2.3401 24 8 2.3620 -10.8525 -1.1771 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.8718 -3.6044 -0.8895 29 1 2.8718 -3.6044 0.8904 30 1 3.1355 -6.1344 0.0022 31 1 1.9791 -7.8899 2.0279 32 1 0.4458 -6.9997 1.8735 33 1 0.0389 -9.3723 2.4635 34 1 -0.6093 -8.9970 0.8488 35 1 2.0836 -10.3135 1.4260 36 1 0.6270 -11.1450 0.8297 37 1 2.5670 -8.2314 -1.6321 38 1 3.2225 -8.6027 -0.0193 39 1 1.2184 -9.4213 -3.2788 40 1 -0.1717 -10.5563 -3.2257 41 1 2.3671 -11.5334 -3.1558 42 1 1.1083 -12.2517 -2.0986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -148.850200 kcal Electronic energy + Delta-G solvation = -22851.675563 eV Core-core repulsion = 19409.835062 eV Total energy + Delta-G solvation = -3441.840501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18411 -39.25349 -37.04523 -35.25379 -33.75691 -33.40655 -31.07744 -30.84854 -29.55106 -28.04116 -25.64647 -23.67464 -22.82400 -22.51023 -21.16599 -20.09138 -19.43957 -17.42588 -17.04480 -16.88867 -16.03251 -15.72064 -15.41168 -15.01540 -14.78145 -14.48960 -14.36041 -14.19160 -13.56678 -13.38718 -13.14351 -12.96272 -12.68757 -12.56452 -12.19007 -12.12569 -11.82278 -11.44788 -11.14419 -11.13692 -10.89490 -10.82976 -10.64676 -10.58778 -10.48822 -9.91658 -9.84411 -9.62554 -9.13590 -8.93819 -8.72324 -8.29285 -5.93555 -3.97956 3.01451 3.31578 3.35964 3.40336 3.41964 3.50839 3.71975 4.22761 4.42006 4.48812 4.54558 4.62947 4.77004 4.84096 4.93234 5.04147 5.15176 5.21135 5.23126 5.31362 5.41129 5.43701 5.55451 5.61370 5.63589 5.73526 5.84842 6.02403 6.05817 6.22155 6.26674 6.28954 6.34924 6.80086 6.84296 6.93666 7.76884 7.89922 7.95946 8.10380 8.41765 8.84986 9.10793 9.65308 11.17375 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.003033 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.823294 B = 9229.993411 C = 9408.087451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.533 6.533 13 N -0.741 5.741 14 C 0.152 3.848 15 H 0.094 0.906 16 C -0.132 4.132 17 C -0.112 4.112 18 C -0.118 4.118 19 C 0.263 3.737 20 C -0.143 4.143 21 O -0.362 6.362 22 C 0.013 3.987 23 C 0.021 3.979 24 O -0.379 6.379 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.395 0.605 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -25.159 -2.397 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.407 6.407 13 N -0.394 5.394 14 C 0.047 3.953 15 H 0.112 0.888 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.156 4.156 19 C 0.186 3.814 20 C -0.181 4.181 21 O -0.282 6.282 22 C -0.064 4.064 23 C -0.056 4.056 24 O -0.300 6.300 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.250 -24.987 -2.245 25.445 hybrid contribution 1.030 0.846 -0.239 1.354 sum 5.280 -24.140 -2.484 24.836 Atomic orbital electron populations 1.69990 1.06049 1.26664 1.50144 1.25026 0.94827 0.99203 0.95336 0.86653 0.79540 0.83199 0.78526 1.20271 1.21293 1.20258 1.21197 0.92884 0.91069 1.51449 0.92684 1.18888 0.93172 0.89345 0.98602 1.21866 1.00710 0.92039 1.02410 1.21552 0.88697 0.85611 0.74271 1.90669 1.14430 1.87580 1.48071 1.46270 1.09852 1.05399 1.77915 1.20688 0.95851 0.82424 0.96314 0.88812 1.21978 1.00658 0.97547 0.96936 1.21418 0.98926 0.93625 1.01081 1.21856 1.01218 0.99725 0.92802 1.23228 0.79578 0.87224 0.91361 1.22351 0.99375 0.93684 1.02738 1.89322 1.32734 1.84756 1.21438 1.24399 0.99954 0.95273 0.86737 1.24197 0.95562 0.97385 0.88435 1.88881 1.44881 1.53598 1.42603 0.92908 0.95824 0.95859 0.90339 0.90296 0.77121 0.91856 0.90670 0.91142 0.90744 0.90009 0.90848 0.90669 0.89803 0.90533 0.87287 0.88309 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 11 C 0.51 10.03 7.79 -10.99 -0.09 9.94 16 12 O -0.53 -12.81 15.65 5.56 0.09 -12.72 16 13 N -0.74 -10.75 5.08 -53.80 -0.27 -11.03 16 14 C 0.15 2.05 2.31 -67.92 -0.16 1.90 16 15 H 0.09 1.55 7.13 -51.93 -0.37 1.18 16 16 C -0.13 -1.66 5.49 -26.74 -0.15 -1.81 16 17 C -0.11 -1.20 5.78 -26.73 -0.15 -1.36 16 18 C -0.12 -1.15 5.34 -26.75 -0.14 -1.29 16 19 C 0.26 2.80 1.03 -26.77 -0.03 2.78 16 20 C -0.14 -1.55 4.75 -26.74 -0.13 -1.68 16 21 O -0.36 -4.15 9.67 -59.04 -0.57 -4.72 16 22 C 0.01 0.10 7.91 38.17 0.30 0.41 16 23 C 0.02 0.15 8.07 38.17 0.31 0.46 16 24 O -0.38 -3.89 10.87 -59.04 -0.64 -4.53 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -35.07 339.87 -8.48 -43.55 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.00 Total: 0.95 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.92 Total: -6.47 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.46 Total: -38.02 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.13 Total: -21.98 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.07 -8.48 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.300 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds