Wall clock time and date at job start Tue Mar 31 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00218 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00208 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00107 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47039 * 324.99646 * 14 13 11 16 16 C 1.52998 * 109.47773 * 85.00356 * 14 13 11 17 17 C 1.52992 * 109.49808 * 180.17085 * 16 14 13 18 18 C 1.53018 * 109.47191 * 299.83879 * 17 16 14 19 19 C 1.52948 * 109.45863 * 59.76559 * 18 17 16 20 20 C 1.52964 * 109.82845 * 300.37238 * 19 18 17 21 21 O 1.43694 * 109.44478 * 180.22744 * 19 18 17 22 22 C 1.44794 * 104.79835 * 215.86280 * 21 19 18 23 23 C 1.54924 * 101.72272 * 36.06735 * 22 21 19 24 24 O 1.43311 * 109.64740 * 60.89073 * 19 18 17 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 29 29 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 30 30 H 0.97006 * 119.99798 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.46583 * 300.18285 * 16 14 13 32 32 H 1.09007 * 109.46290 * 60.16117 * 16 14 13 33 33 H 1.09004 * 109.47015 * 59.83494 * 17 16 14 34 34 H 1.09005 * 109.46926 * 179.83625 * 17 16 14 35 35 H 1.09004 * 109.46922 * 179.76001 * 18 17 16 36 36 H 1.09004 * 109.47129 * 299.76578 * 18 17 16 37 37 H 1.09007 * 109.47101 * 299.65009 * 20 19 18 38 38 H 1.08997 * 109.47909 * 179.63728 * 20 19 18 39 39 H 1.08994 * 110.98127 * 277.96006 * 22 21 19 40 40 H 1.08999 * 110.98036 * 154.17631 * 22 21 19 41 41 H 1.08997 * 110.69488 * 206.07557 * 23 22 21 42 42 H 1.09007 * 110.68896 * 82.87491 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 8 0.2789 -4.9671 -0.0030 13 7 2.1655 -6.1344 -0.0024 14 6 1.4330 -7.4030 -0.0035 15 1 0.5221 -7.2971 0.5857 16 6 1.0697 -7.7812 -1.4408 17 6 0.3010 -9.1039 -1.4421 18 6 1.1758 -10.2029 -0.8350 19 6 1.5467 -9.8245 0.5997 20 6 2.3101 -8.4989 0.6059 21 8 2.3726 -10.8541 1.1677 22 6 1.9771 -10.9200 2.5590 23 6 0.4543 -10.6501 2.4665 24 8 0.3565 -9.6981 1.3878 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 2.8725 -3.6039 -0.8910 29 1 2.8713 -3.6047 0.8890 30 1 3.1356 -6.1344 -0.0027 31 1 0.4477 -6.9990 -1.8760 32 1 1.9810 -7.8899 -2.0291 33 1 -0.6088 -8.9960 -0.8515 34 1 0.0399 -9.3714 -2.4661 35 1 0.6264 -11.1444 -0.8321 36 1 2.0837 -10.3137 -1.4280 37 1 3.2227 -8.6025 0.0187 38 1 2.5659 -8.2316 1.6311 39 1 2.4756 -10.1468 3.1434 40 1 2.1737 -11.9084 2.9742 41 1 0.0824 -10.2189 3.3959 42 1 -0.0849 -11.5655 2.2224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:45 Heat of formation + Delta-G solvation = -148.869109 kcal Electronic energy + Delta-G solvation = -22840.155893 eV Core-core repulsion = 19398.314572 eV Total energy + Delta-G solvation = -3441.841321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17736 -39.24986 -37.04132 -35.27152 -33.74416 -33.40161 -31.07188 -30.83580 -29.55064 -28.04096 -25.64478 -23.69632 -22.80757 -22.51341 -21.17255 -20.04542 -19.45688 -17.57401 -17.06034 -16.68137 -16.04644 -15.62109 -15.43751 -15.09325 -14.81272 -14.51326 -14.37689 -14.02459 -13.74159 -13.40363 -13.08599 -12.98772 -12.68273 -12.48199 -12.20818 -12.12634 -11.81414 -11.45037 -11.15274 -11.13280 -10.89235 -10.81651 -10.64731 -10.59022 -10.48196 -9.91227 -9.85109 -9.62120 -9.13084 -8.92912 -8.71322 -8.28918 -5.93227 -3.97653 3.04937 3.32339 3.36179 3.40370 3.41948 3.47770 3.70798 4.23238 4.42486 4.48861 4.52809 4.65231 4.75561 4.81591 4.94940 5.03849 5.15800 5.20690 5.24549 5.29633 5.41427 5.43660 5.55793 5.62209 5.63213 5.73809 5.84981 6.02630 6.06151 6.22680 6.27131 6.29414 6.35805 6.82190 6.83881 6.94171 7.77230 7.90377 7.96773 8.10798 8.42108 8.85863 9.11131 9.65623 11.17689 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.003031 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.660117 B = 9234.367977 C = 9408.465236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.532 6.532 13 N -0.741 5.741 14 C 0.152 3.848 15 H 0.094 0.906 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.118 4.118 19 C 0.264 3.736 20 C -0.143 4.143 21 O -0.372 6.372 22 C 0.014 3.986 23 C 0.019 3.981 24 O -0.368 6.368 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -25.257 2.378 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.407 6.407 13 N -0.395 5.395 14 C 0.047 3.953 15 H 0.112 0.888 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.156 4.156 19 C 0.186 3.814 20 C -0.181 4.181 21 O -0.292 6.292 22 C -0.062 4.062 23 C -0.058 4.058 24 O -0.289 6.289 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.228 0.772 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.417 -25.088 2.224 25.571 hybrid contribution 1.059 0.830 0.238 1.367 sum 5.476 -24.258 2.462 24.990 Atomic orbital electron populations 1.69996 1.06043 1.26654 1.50159 1.25026 0.94829 0.99199 0.95341 0.86652 0.79540 0.83205 0.78523 1.20261 1.21294 1.20271 1.21198 0.92884 0.91075 1.51431 0.92687 1.18889 0.93176 0.89346 0.98608 1.21866 1.00708 0.92058 1.02396 1.21547 0.88697 0.85615 0.74278 1.90668 1.14431 1.87579 1.48062 1.46275 1.09829 1.05433 1.77917 1.20698 0.95939 0.82426 0.96259 0.88760 1.21984 1.00645 0.97550 0.96958 1.21408 0.98923 0.93562 1.01032 1.21833 1.01192 0.99744 0.92850 1.23230 0.79496 0.87281 0.91371 1.22380 0.99169 0.93860 1.02705 1.89250 1.60865 1.57050 1.22082 1.24392 0.94038 1.03798 0.83987 1.24204 0.96200 0.93779 0.91581 1.88969 1.39942 1.59133 1.40886 0.92914 0.95847 0.95826 0.90302 0.90353 0.77152 0.90666 0.91877 0.90710 0.91105 0.90846 0.90184 0.89719 0.90679 0.90537 0.87397 0.88180 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.70 5.64 -27.89 -0.16 -2.85 16 11 C 0.51 10.06 7.79 -10.99 -0.09 9.97 16 12 O -0.53 -12.85 15.64 5.56 0.09 -12.76 16 13 N -0.74 -10.79 5.08 -53.80 -0.27 -11.06 16 14 C 0.15 2.06 2.32 -67.92 -0.16 1.90 16 15 H 0.09 1.57 7.15 -51.93 -0.37 1.20 16 16 C -0.13 -1.66 5.49 -26.74 -0.15 -1.81 16 17 C -0.11 -1.19 5.79 -26.73 -0.15 -1.34 16 18 C -0.12 -1.15 5.33 -26.75 -0.14 -1.30 16 19 C 0.26 2.80 1.02 -26.78 -0.03 2.78 16 20 C -0.14 -1.54 4.75 -26.74 -0.13 -1.67 16 21 O -0.37 -3.78 10.99 -59.04 -0.65 -4.42 16 22 C 0.01 0.10 7.91 38.17 0.30 0.41 16 23 C 0.02 0.15 8.08 38.17 0.31 0.46 16 24 O -0.37 -4.25 9.62 -59.04 -0.57 -4.82 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.90 7.72 -51.93 -0.40 0.50 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -35.15 339.98 -8.48 -43.64 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.00 Total: 0.92 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -0.92 Total: -6.45 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.46 Total: -38.08 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.13 Total: -22.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.15 -8.48 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.233 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds