Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48504 * 109.46615 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47252 * 299.99673 * 3 2 1 6 6 H 1.48495 * 109.47187 * 60.00373 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72154 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00261 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00039 * 179.97438 * 15 14 13 18 18 C 1.44582 * 118.63978 * 359.73916 * 17 15 14 19 19 C 1.54300 * 109.90799 * 270.84844 * 18 17 15 20 20 C 1.47097 * 110.29810 * 288.75890 * 19 18 17 21 21 C 1.52573 * 114.32392 * 62.73339 * 20 19 18 22 22 C 1.50882 * 109.35210 * 274.98149 * 21 20 19 23 23 C 1.47605 * 118.64840 * 179.97438 * 17 15 14 24 24 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47201 * 59.99291 * 9 7 2 26 26 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 27 27 H 1.09001 * 109.47602 * 59.99522 * 10 9 7 28 28 H 1.09001 * 109.46922 * 299.99667 * 10 9 7 29 29 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 30 30 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 31 31 H 1.09002 * 109.44938 * 30.76524 * 18 17 15 32 32 H 1.09005 * 109.44684 * 150.67903 * 18 17 15 33 33 H 1.09005 * 109.40315 * 168.46827 * 19 18 17 34 34 H 1.09001 * 109.28624 * 48.97993 * 19 18 17 35 35 H 1.08997 * 108.51321 * 301.47896 * 20 19 18 36 36 H 1.09000 * 108.51458 * 183.98384 * 20 19 18 37 37 H 1.08994 * 109.48881 * 155.01675 * 21 20 19 38 38 H 1.08994 * 109.49052 * 34.94325 * 21 20 19 39 39 H 1.08996 * 109.36758 * 331.69284 * 22 21 20 40 40 H 1.09003 * 109.36129 * 212.07991 * 22 21 20 41 41 H 1.08999 * 108.94809 * 258.56290 * 23 17 15 42 42 H 1.09007 * 108.94098 * 17.27339 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2836 -4.9671 0.0070 13 8 2.1630 -6.1296 0.0031 14 6 1.3722 -7.3474 0.0100 15 6 2.2902 -8.5424 0.0090 16 8 3.4926 -8.3835 0.0036 17 7 1.7752 -9.7879 0.0152 18 6 0.3378 -9.9433 0.0285 19 6 -0.1737 -9.9766 1.4839 20 6 0.2136 -11.2390 2.1321 21 6 1.7202 -11.4461 2.2546 22 6 2.2475 -12.0495 0.9761 23 6 2.7017 -10.9369 0.0135 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 0.7471 -7.3696 0.9026 30 1 0.7397 -7.3748 -0.8774 31 1 -0.1228 -9.1049 -0.4941 32 1 0.0687 -10.8739 -0.4713 33 1 -1.2601 -9.8874 1.4880 34 1 0.2563 -9.1409 2.0358 35 1 -0.2038 -12.0656 1.5571 36 1 -0.2213 -11.2627 3.1312 37 1 1.9284 -12.1183 3.0869 38 1 2.2061 -10.4866 2.4313 39 1 1.4614 -12.6379 0.5030 40 1 3.0937 -12.6976 1.2045 41 1 2.7594 -11.3435 -0.9961 42 1 3.6918 -10.5934 0.3135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -138.111159 kcal Electronic energy + Delta-G solvation = -22363.559280 eV Core-core repulsion = 18922.184459 eV Total energy + Delta-G solvation = -3441.374821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79884 -39.79296 -37.84778 -36.04508 -34.24660 -33.58485 -33.18856 -31.19757 -29.10391 -27.05060 -25.96113 -25.44654 -22.59586 -21.80890 -20.84107 -19.87609 -19.21444 -17.71388 -17.11239 -16.83543 -16.57625 -16.11108 -15.78076 -15.23524 -14.82455 -14.65967 -14.45179 -14.23374 -13.75765 -13.67645 -13.24691 -12.90466 -12.54547 -12.34101 -12.24465 -12.18439 -11.97026 -11.30824 -11.20916 -11.11711 -11.04462 -10.96877 -10.81591 -10.61853 -10.51463 -10.04537 -10.01600 -9.89382 -9.55962 -9.15795 -8.96529 -8.37459 -6.01232 -4.05730 2.30576 2.39090 2.76935 3.28855 3.31863 3.39453 3.43868 4.12830 4.38329 4.40687 4.45750 4.49095 4.55929 4.70739 4.88787 4.99950 5.01285 5.10455 5.21941 5.29060 5.33145 5.34473 5.45862 5.51586 5.56332 5.71388 5.73944 5.75775 5.86134 5.99170 6.14130 6.21008 6.26554 6.57697 6.88070 7.01931 7.67117 7.73253 7.92348 7.98271 8.22259 8.38581 9.01511 9.58413 11.09851 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039857 B = 0.002792 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.337422 B =10026.646082 C =10386.771307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.458 3.542 12 O -0.506 6.506 13 O -0.343 6.343 14 C 0.046 3.954 15 C 0.514 3.486 16 O -0.515 6.515 17 N -0.605 5.605 18 C 0.104 3.896 19 C -0.143 4.143 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.130 4.130 23 C 0.113 3.887 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -26.579 1.831 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.302 3.698 12 O -0.392 6.392 13 O -0.260 6.260 14 C -0.032 4.032 15 C 0.301 3.699 16 O -0.389 6.389 17 N -0.340 5.340 18 C -0.020 4.020 19 C -0.181 4.181 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.168 4.168 23 C -0.009 4.009 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.709 -26.416 1.817 26.488 hybrid contribution 0.036 0.743 0.033 0.744 sum 0.745 -25.673 1.851 25.751 Atomic orbital electron populations 1.70001 1.06089 1.26642 1.50132 1.25020 0.94864 0.99353 0.95126 0.86481 0.80080 0.83518 0.77595 1.19612 1.20975 1.20970 1.21199 0.93176 0.90587 1.51558 0.92189 1.19036 0.93215 0.89256 0.98912 1.21794 1.00710 0.87102 1.04325 1.24948 0.87982 0.85448 0.71403 1.90630 1.15777 1.87544 1.45285 1.86665 1.40751 1.13755 1.84813 1.22644 0.93106 0.82844 1.04581 1.20307 0.89114 0.83996 0.76477 1.90732 1.15181 1.85409 1.47603 1.47604 1.06858 1.05371 1.74215 1.21601 0.79748 1.03528 0.97113 1.21254 1.01672 0.98984 0.96225 1.20445 0.96132 0.97896 1.01020 1.21087 0.95797 1.01569 0.97232 1.21781 1.01740 0.97327 0.95972 1.21850 0.93979 0.85649 0.99414 0.92919 0.95541 0.95540 0.88717 0.88724 0.88448 0.88498 0.89961 0.89866 0.90201 0.91488 0.92154 0.92231 0.91788 0.91505 0.91491 0.90548 0.91755 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.87 4.26 -27.89 -0.12 0.75 16 10 C -0.10 -2.14 5.75 -27.89 -0.16 -2.30 16 11 C 0.46 9.20 7.96 36.01 0.29 9.48 16 12 O -0.51 -11.22 15.73 -18.75 -0.29 -11.51 16 13 O -0.34 -6.17 9.76 -45.92 -0.45 -6.62 16 14 C 0.05 0.63 4.43 36.00 0.16 0.79 16 15 C 0.51 6.94 7.70 -10.99 -0.08 6.85 16 16 O -0.51 -8.96 15.78 -14.11 -0.22 -9.18 16 17 N -0.60 -5.83 2.25 -172.87 -0.39 -6.21 16 18 C 0.10 0.73 5.12 -4.39 -0.02 0.70 16 19 C -0.14 -0.96 5.61 -28.88 -0.16 -1.13 16 20 C -0.12 -0.72 5.15 -29.78 -0.15 -0.87 16 21 C -0.12 -0.82 5.51 -28.01 -0.15 -0.97 16 22 C -0.13 -0.78 5.71 -27.29 -0.16 -0.94 16 23 C 0.11 0.93 6.11 -2.93 -0.02 0.91 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 28 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 29 H 0.10 1.22 7.08 -51.93 -0.37 0.85 16 30 H 0.10 1.19 7.31 -51.93 -0.38 0.81 16 31 H 0.08 0.56 6.26 -51.93 -0.32 0.23 16 32 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.56 7.28 -51.93 -0.38 0.18 16 35 H 0.06 0.31 7.36 -51.93 -0.38 -0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 39 H 0.07 0.33 7.32 -51.93 -0.38 -0.05 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.93 6.95 -51.92 -0.36 0.57 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -34.37 339.87 -8.23 -42.61 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.72 Total: -4.19 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.99 Total: -0.28 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.35 Total: -32.51 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.97 Total: -27.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.37 -8.23 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.505 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds