Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47467 * 2 1 4 4 C 1.52996 * 109.46959 * 120.00166 * 2 1 3 5 5 C 1.50697 * 109.47491 * 299.99452 * 4 2 1 6 6 O 1.20833 * 119.99747 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00262 * 179.72204 * 5 4 2 8 8 C 1.45202 * 116.99836 * 180.27336 * 7 5 4 9 9 C 1.50701 * 109.46859 * 180.02562 * 8 7 5 10 10 O 1.21275 * 120.00011 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99566 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99590 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.46913 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00016 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99694 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46964 * 90.00237 * 17 15 13 19 19 H 1.48502 * 109.46957 * 209.99724 * 17 15 13 20 20 H 1.48497 * 109.47160 * 330.00016 * 17 15 13 21 21 C 1.53003 * 109.46809 * 240.00093 * 2 1 3 22 22 C 1.52999 * 117.50050 * 128.74999 * 21 2 1 23 23 C 1.52991 * 117.49999 * 60.08556 * 21 2 1 24 24 H 1.09003 * 109.46745 * 299.99891 * 1 2 3 25 25 H 1.09001 * 109.46985 * 59.99786 * 1 2 3 26 26 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46830 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46739 * 300.00369 * 3 2 1 29 29 H 1.09003 * 109.46595 * 60.00015 * 3 2 1 30 30 H 1.09004 * 109.47066 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47234 * 60.00162 * 4 2 1 32 32 H 1.08998 * 109.47630 * 300.00638 * 8 7 5 33 33 H 1.09004 * 109.46770 * 60.01042 * 8 7 5 34 34 H 0.97001 * 120.00823 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47163 * 299.99808 * 12 11 9 36 36 H 1.09004 * 109.46912 * 60.00013 * 12 11 9 37 37 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.54529 * 274.42018 * 21 2 1 39 39 H 1.08994 * 117.49562 * 359.97438 * 22 21 2 40 40 H 1.08998 * 117.49972 * 145.01826 * 22 21 2 41 41 H 1.09000 * 117.50440 * 214.98229 * 23 21 2 42 42 H 1.09005 * 117.50274 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5378 -0.0109 2.4797 6 8 0.8428 0.9713 2.3689 7 8 1.8575 -0.4728 3.6988 8 6 1.3336 0.2581 4.8389 9 6 1.7939 -0.4018 6.1131 10 8 2.4947 -1.3904 6.0652 11 7 1.4266 0.1068 7.3060 12 6 1.8744 -0.5344 8.5448 13 6 1.3307 0.2241 9.7280 14 1 0.7129 1.0963 9.5728 15 6 1.6210 -0.1960 11.0088 16 7 1.1460 0.4657 12.0414 17 14 2.6889 -1.7050 11.2772 18 1 4.1142 -1.2952 11.3551 19 1 2.2954 -2.3707 12.5450 20 1 2.5062 -2.6485 10.1452 21 6 2.0400 -0.7213 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6373 -0.1484 -2.6096 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -1.7489 1.2492 32 1 1.6971 1.2853 4.8102 33 1 0.2442 0.2570 4.8017 34 1 0.8663 0.8977 7.3444 35 1 1.5119 -1.5620 8.5737 36 1 2.9639 -0.5323 8.5817 37 1 1.3500 0.1699 12.9424 38 1 2.1252 -1.8046 -1.1647 39 1 3.3945 0.9949 -1.7867 40 1 3.8431 -0.6025 -2.5923 41 1 1.4580 -0.8547 -3.4201 42 1 1.0095 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815469131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -105.015667 kcal Electronic energy + Delta-G solvation = -21952.769717 eV Core-core repulsion = 18512.830024 eV Total energy + Delta-G solvation = -3439.939693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01301 -39.34338 -38.62387 -36.51104 -34.38969 -33.92555 -32.44656 -29.95399 -28.57211 -27.61401 -26.90723 -23.97187 -22.54494 -22.22097 -21.04429 -20.13985 -18.73592 -17.87790 -17.51113 -16.83429 -16.50256 -16.29056 -15.69804 -15.14326 -15.05928 -14.61910 -14.25482 -13.96515 -13.91926 -13.35803 -13.17583 -12.79603 -12.47992 -12.38708 -12.28920 -12.04561 -11.90941 -11.64529 -11.48620 -11.30865 -11.10701 -11.07712 -10.81719 -10.64692 -10.61307 -10.21346 -10.12435 -10.01410 -9.55670 -9.35396 -8.83164 -8.28495 -6.25457 -4.28582 2.07148 2.36425 3.01697 3.24379 3.31257 3.39071 3.46241 3.84838 4.26474 4.29699 4.33913 4.54405 4.66973 4.77395 4.84458 4.95997 5.06840 5.09215 5.15543 5.17487 5.21543 5.27321 5.32752 5.38883 5.53808 5.54300 5.68144 5.76493 5.80247 5.82504 5.94420 6.09109 6.18848 6.48876 6.71974 6.99398 7.08038 7.30338 7.64910 8.03635 8.39857 8.66673 8.78518 9.33573 10.86277 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050046 B = 0.002562 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.355875 B =10928.004316 C =11214.696335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.019 4.019 3 C -0.160 4.160 4 C -0.103 4.103 5 C 0.462 3.538 6 O -0.503 6.503 7 O -0.331 6.331 8 C 0.049 3.951 9 C 0.501 3.499 10 O -0.537 6.537 11 N -0.700 5.700 12 C 0.222 3.778 13 C -0.546 4.546 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.144 4.144 22 C -0.185 4.185 23 C -0.176 4.176 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.399 0.601 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.268 0.732 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -0.169 -27.236 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 C -0.217 4.217 4 C -0.140 4.140 5 C 0.306 3.694 6 O -0.392 6.392 7 O -0.246 6.246 8 C -0.028 4.028 9 C 0.285 3.715 10 O -0.414 6.414 11 N -0.350 5.350 12 C 0.100 3.900 13 C -0.584 4.584 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.163 4.163 22 C -0.221 4.221 23 C -0.213 4.213 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.233 0.767 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.938 -0.588 -27.024 27.047 hybrid contribution 0.181 -0.254 0.365 0.480 sum 1.119 -0.843 -26.659 26.696 Atomic orbital electron populations 1.22108 0.93539 1.01877 1.03538 1.19849 0.96319 0.95059 0.90681 1.22261 1.00534 0.95247 1.03616 1.21481 1.03523 1.00651 0.88391 1.23794 0.77637 0.83045 0.84957 1.90556 1.35688 1.26065 1.86841 1.86573 1.69042 1.54712 1.14265 1.22803 1.00420 0.96208 0.83398 1.19953 0.81777 0.85162 0.84652 1.90698 1.37687 1.25809 1.87253 1.46074 1.51904 1.31496 1.05548 1.19554 0.95417 0.94139 0.80849 1.21066 1.33940 1.14328 0.89064 0.90127 1.24795 0.95348 0.96837 0.95626 1.69877 1.44421 1.39774 0.98674 0.86812 0.81080 0.83428 0.78351 1.19787 1.20834 1.18465 1.22296 1.03937 0.98951 0.91073 1.23181 0.92444 1.02683 1.03841 1.22934 0.98215 1.03273 0.96861 0.89977 0.92610 0.93061 0.92709 0.92613 0.89874 0.87410 0.87471 0.88355 0.88343 0.76712 0.95429 0.95890 0.92179 0.87638 0.88009 0.89045 0.88973 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.02 37.16 0.30 -1.06 16 2 C -0.02 -0.16 0.62 -154.51 -0.10 -0.25 16 3 C -0.16 -1.39 6.77 37.16 0.25 -1.14 16 4 C -0.10 -0.91 4.86 -27.89 -0.14 -1.05 16 5 C 0.46 5.59 7.37 36.00 0.27 5.86 16 6 O -0.50 -6.60 11.10 -18.76 -0.21 -6.81 16 7 O -0.33 -4.86 9.75 -45.90 -0.45 -5.31 16 8 C 0.05 0.70 5.94 36.01 0.21 0.92 16 9 C 0.50 9.47 7.91 -10.99 -0.09 9.38 16 10 O -0.54 -12.32 16.50 -14.10 -0.23 -12.56 16 11 N -0.70 -13.78 5.55 -61.47 -0.34 -14.12 16 12 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 13 C -0.55 -14.73 9.83 -34.44 -0.34 -15.07 16 14 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.14 -1.00 5.14 -90.62 -0.47 -1.47 16 22 C -0.18 -1.19 9.57 -26.69 -0.26 -1.45 16 23 C -0.18 -1.13 9.38 -26.70 -0.25 -1.38 16 24 H 0.08 0.89 5.52 -51.93 -0.29 0.60 16 25 H 0.05 0.45 7.29 -51.93 -0.38 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.44 6.97 -51.93 -0.36 0.07 16 28 H 0.05 0.44 7.07 -51.93 -0.37 0.08 16 29 H 0.08 0.89 5.52 -51.93 -0.29 0.60 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.40 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 36 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 39 H 0.10 0.66 5.85 -51.93 -0.30 0.36 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.62 7.07 -51.93 -0.37 0.25 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -32.24 340.11 -7.14 -39.38 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.42 Total: 2.48 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.72 Total: 0.71 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.43 Total: -39.50 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.89 Total: -24.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.24 -7.14 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815469131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.639 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds