Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.53002 * 109.47117 * 240.00511 * 2 1 3 5 5 C 1.52993 * 109.47678 * 119.99816 * 2 1 3 6 6 C 1.53002 * 109.46713 * 59.99957 * 5 2 1 7 7 H 1.09003 * 115.56412 * 29.31456 * 6 5 2 8 8 C 1.53007 * 117.49932 * 243.62388 * 6 5 2 9 9 C 1.52998 * 117.50113 * 175.00121 * 6 5 2 10 10 H 1.09007 * 117.51795 * 0.02562 * 9 6 5 11 11 C 1.50701 * 117.50174 * 214.98167 * 9 6 5 12 12 O 1.20819 * 119.99635 * 359.97438 * 11 9 6 13 13 O 1.34229 * 119.99631 * 179.97438 * 11 9 6 14 14 C 1.45206 * 116.99457 * 180.02562 * 13 11 9 15 15 C 1.50706 * 109.46849 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 269.99889 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00409 * 22 20 18 25 25 H 1.48498 * 109.47011 * 150.00030 * 22 20 18 26 26 H 1.09002 * 109.47036 * 300.00020 * 1 2 3 27 27 H 1.08998 * 109.47256 * 59.99909 * 1 2 3 28 28 H 1.08997 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46856 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47179 * 300.00167 * 3 2 1 31 31 H 1.08998 * 109.47559 * 60.00410 * 3 2 1 32 32 H 1.09005 * 109.46851 * 299.99661 * 4 2 1 33 33 H 1.08999 * 109.47157 * 59.99175 * 4 2 1 34 34 H 1.09000 * 109.47629 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47146 * 300.00430 * 5 2 1 36 36 H 1.08991 * 109.47561 * 179.97438 * 5 2 1 37 37 H 1.08999 * 117.49365 * 145.02166 * 8 6 5 38 38 H 1.08993 * 117.49554 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.47426 * 59.99829 * 14 13 11 40 40 H 1.09002 * 109.46778 * 299.99167 * 14 13 11 41 41 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 42 42 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 1 1.3622 -2.6032 0.2659 8 6 0.5861 -2.5793 2.3793 9 6 2.0286 -3.0892 2.3608 10 1 2.7196 -2.6707 3.0926 11 6 2.2498 -4.5387 2.0126 12 8 2.0337 -4.9300 0.8901 13 8 2.6869 -5.3948 2.9494 14 6 2.8782 -6.7756 2.5428 15 6 3.3689 -7.5818 3.7177 16 8 3.5401 -7.0457 4.7921 17 7 3.6166 -8.8989 3.5747 18 6 4.0635 -9.6323 4.6434 19 1 4.2167 -9.1546 5.5999 20 6 4.3193 -10.9900 4.4959 21 7 4.1333 -11.5711 3.3320 22 14 4.9276 -11.9894 5.9522 23 1 6.4120 -11.9663 5.9829 24 1 4.3972 -11.4047 7.2099 25 1 4.4569 -13.3917 5.8213 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 1.6768 -0.2074 2.1391 36 1 3.1300 -0.7215 1.2489 37 1 -0.2028 -3.2922 2.1395 38 1 0.3289 -1.8252 3.1230 39 1 3.6140 -6.8193 1.7399 40 1 1.9314 -7.1851 2.1908 41 1 3.4793 -9.3277 2.7156 42 1 3.8171 -11.0522 2.5759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830252730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = -120.609465 kcal Electronic energy + Delta-G solvation = -21755.386397 eV Core-core repulsion = 18314.770506 eV Total energy + Delta-G solvation = -3440.615891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60278 -38.96180 -38.18823 -36.49181 -35.59883 -34.35380 -31.26587 -28.83787 -27.87509 -27.57486 -27.51590 -24.95405 -23.91443 -21.59643 -20.19299 -19.95590 -19.06775 -18.06227 -17.67880 -16.80392 -16.35537 -15.95551 -15.06661 -14.93953 -14.80086 -14.58865 -14.13484 -13.83931 -13.68937 -13.53824 -13.13136 -12.63099 -12.61384 -12.36574 -12.12764 -12.02191 -11.93243 -11.81393 -11.29570 -11.28587 -11.06628 -11.01905 -10.75215 -10.53178 -10.47523 -10.34304 -10.24552 -10.20968 -9.94442 -9.64431 -8.57756 -8.14251 -6.83469 -3.97894 2.14625 2.60277 3.25445 3.32601 3.52113 3.55221 3.69302 4.15071 4.28630 4.38663 4.48149 4.59999 4.63912 4.69959 4.87884 5.05625 5.08933 5.14803 5.25790 5.29578 5.34091 5.39105 5.49623 5.49919 5.51657 5.56450 5.59223 5.63732 5.72076 5.75253 5.79885 5.80685 5.95225 6.00376 6.08368 6.18290 6.57364 7.67439 7.87638 7.99286 8.47934 8.67132 9.34914 9.71256 10.59563 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.051027 B = 0.002471 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.598330 B =11328.950512 C =11514.437174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.116 4.116 7 H 0.124 0.876 8 C -0.144 4.144 9 C -0.165 4.165 10 H 0.136 0.864 11 C 0.488 3.512 12 O -0.516 6.516 13 O -0.321 6.321 14 C 0.060 3.940 15 C 0.441 3.559 16 O -0.569 6.569 17 N -0.566 5.566 18 C -0.384 4.384 19 H 0.102 0.898 20 C -0.007 4.007 21 N -0.896 5.896 22 Si 1.096 2.904 23 H -0.283 1.283 24 H -0.282 1.282 25 H -0.280 1.280 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.378 0.622 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 21.964 -7.906 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.118 4.118 6 C -0.134 4.134 7 H 0.141 0.859 8 C -0.181 4.181 9 C -0.184 4.184 10 H 0.154 0.846 11 C 0.332 3.668 12 O -0.405 6.405 13 O -0.235 6.235 14 C -0.017 4.017 15 C 0.226 3.774 16 O -0.452 6.452 17 N -0.204 5.204 18 C -0.513 4.513 19 H 0.120 0.880 20 C -0.210 4.210 21 N -0.535 5.535 22 Si 0.921 3.079 23 H -0.210 1.210 24 H -0.208 1.208 25 H -0.205 1.205 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.211 0.789 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.948 20.630 -6.996 22.581 hybrid contribution -0.493 1.090 -1.160 1.666 sum -6.441 21.720 -8.156 24.078 Atomic orbital electron populations 1.21890 0.94401 1.02177 1.01429 1.20510 0.95892 0.95183 0.95108 1.21874 1.01019 0.95302 1.01699 1.21970 1.01116 1.00654 0.96635 1.21309 1.00764 0.91876 0.97887 1.22662 1.00925 0.94655 0.95117 0.85865 1.23195 0.90720 1.02870 1.01304 1.21810 1.01674 0.88904 1.06000 0.84626 1.22655 0.73150 0.88147 0.82873 1.90632 1.48433 1.79010 1.22444 1.86549 1.76290 1.19883 1.40786 1.22731 1.02357 0.78752 0.97889 1.19238 0.85999 0.83046 0.89095 1.90567 1.56663 1.70261 1.27693 1.41780 1.59067 1.06716 1.12886 1.20601 1.44779 0.93502 0.92380 0.87966 1.26607 0.96559 0.94482 1.03363 1.70873 1.42805 1.38752 1.01037 0.83064 0.76552 0.75398 0.72842 1.20963 1.20792 1.20534 0.92731 0.92954 0.92156 0.92637 0.92656 0.92671 0.92008 0.92812 0.92606 0.91236 0.91051 0.88089 0.87224 0.89608 0.89641 0.78853 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.23 37.16 0.31 -0.64 16 2 C -0.07 -0.47 0.80 -154.51 -0.12 -0.59 16 3 C -0.14 -0.87 8.47 37.16 0.31 -0.55 16 4 C -0.15 -1.12 8.23 37.16 0.31 -0.81 16 5 C -0.08 -0.62 4.55 -26.73 -0.12 -0.74 16 6 C -0.12 -1.11 3.77 -90.62 -0.34 -1.45 16 7 H 0.12 1.33 5.58 -51.93 -0.29 1.04 16 8 C -0.14 -1.36 9.88 -26.73 -0.26 -1.62 16 9 C -0.16 -1.97 6.02 -91.77 -0.55 -2.52 16 10 H 0.14 1.47 8.14 -51.93 -0.42 1.04 16 11 C 0.49 7.96 7.74 36.01 0.28 8.24 16 12 O -0.52 -9.15 16.01 -18.74 -0.30 -9.45 16 13 O -0.32 -6.22 9.76 -45.90 -0.45 -6.67 16 14 C 0.06 1.18 5.94 36.01 0.21 1.40 16 15 C 0.44 10.89 7.86 -10.98 -0.09 10.80 16 16 O -0.57 -16.24 16.08 -14.11 -0.23 -16.47 16 17 N -0.57 -14.43 5.28 -10.96 -0.06 -14.49 16 18 C -0.38 -10.80 9.68 -14.93 -0.14 -10.95 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 20 C -0.01 -0.19 5.50 -17.47 -0.10 -0.29 16 21 N -0.90 -24.99 13.68 55.50 0.76 -24.23 16 22 Si 1.10 24.09 29.92 -169.99 -5.09 19.01 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.53 6.14 -51.93 -0.32 0.21 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.11 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.38 8.81 6.73 -40.82 -0.27 8.54 16 42 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -33.45 351.91 -6.97 -40.42 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.60 Total: 6.30 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.31 Total: 0.27 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.70 Total: -38.72 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.97 Total: -32.58 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.09 Total: 19.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.45 -6.97 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830252730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.189 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds