Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86794 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47207 * 275.98925 * 3 2 1 5 5 H 1.48506 * 109.47183 * 35.98717 * 3 2 1 6 6 H 1.48500 * 109.47326 * 155.98705 * 3 2 1 7 7 C 1.38957 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00181 * 338.60740 * 7 2 1 9 9 N 1.37097 * 119.99614 * 158.60667 * 7 2 1 10 10 C 1.46500 * 120.00134 * 322.20317 * 9 7 2 11 11 C 1.50697 * 109.47613 * 263.23721 * 10 9 7 12 12 O 1.20827 * 119.99634 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.34779 * 120.00066 * 142.20637 * 9 7 2 15 15 O 1.21298 * 119.99520 * 0.02562 * 14 9 7 16 16 C 1.50698 * 120.00244 * 179.97438 * 14 9 7 17 17 C 1.52997 * 109.47199 * 180.02562 * 16 14 9 18 18 C 1.54241 * 108.89654 * 296.39989 * 17 16 14 19 19 C 1.50558 * 108.48550 * 159.17867 * 18 17 16 20 20 C 1.54067 * 112.41430 * 94.26565 * 19 18 17 21 21 C 1.54063 * 112.81547 * 318.27849 * 20 19 18 22 22 C 1.50469 * 112.49690 * 318.28694 * 21 20 19 23 23 C 1.45536 * 108.89747 * 173.60611 * 17 16 14 24 24 H 0.96997 * 119.99902 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46979 * 23.24606 * 10 9 7 26 26 H 1.09003 * 109.46590 * 143.23934 * 10 9 7 27 27 H 0.96703 * 117.00111 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47399 * 300.00089 * 16 14 9 29 29 H 1.08994 * 109.47078 * 60.00269 * 16 14 9 30 30 H 1.09003 * 108.87322 * 55.00015 * 17 16 14 31 31 H 1.09007 * 109.62679 * 278.97534 * 18 17 16 32 32 H 1.09005 * 109.62995 * 39.55016 * 18 17 16 33 33 H 1.08991 * 108.92108 * 333.50603 * 19 18 17 34 34 H 1.09005 * 108.91068 * 215.01497 * 19 18 17 35 35 H 1.09002 * 108.81148 * 197.41611 * 20 19 18 36 36 H 1.09000 * 108.72612 * 79.08191 * 20 19 18 37 37 H 1.09001 * 108.87606 * 197.50611 * 21 20 19 38 38 H 1.09000 * 108.87915 * 79.06712 * 21 20 19 39 39 H 1.09006 * 109.63035 * 334.44338 * 22 21 20 40 40 H 1.09000 * 109.62826 * 213.86391 * 22 21 20 41 41 H 1.08994 * 108.89783 * 303.44223 * 23 17 16 42 42 H 1.09001 * 108.89508 * 62.03313 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3692 2.1194 -1.3924 5 1 1.5146 2.6128 0.8227 6 1 3.6032 1.4068 0.5697 7 6 2.0088 -1.2034 0.0005 8 1 1.5246 -2.1063 0.3421 9 7 3.3089 -1.2445 -0.4325 10 6 3.7280 -0.4234 -1.5711 11 6 3.7010 -1.2552 -2.8274 12 8 3.3655 -2.4149 -2.7770 13 8 4.0485 -0.7076 -4.0026 14 6 4.2015 -2.0403 0.1891 15 8 3.8543 -2.7206 1.1315 16 6 5.6305 -2.0860 -0.2873 17 6 6.4272 -3.0602 0.5827 18 6 6.4572 -2.5278 2.0300 19 6 6.7664 -3.6752 2.9544 20 6 8.2703 -3.7866 3.2699 21 6 9.1589 -3.5574 2.0323 22 6 8.6160 -4.2307 0.8011 23 6 7.7615 -3.2107 0.0212 24 1 -0.4850 0.8400 -0.0004 25 1 3.0478 0.4213 -1.6798 26 1 4.7398 -0.0555 -1.4007 27 1 4.0152 -1.2805 -4.7809 28 1 5.6573 -2.4202 -1.3244 29 1 6.0696 -1.0910 -0.2147 30 1 5.9290 -4.0296 0.5735 31 1 7.2281 -1.7627 2.1228 32 1 5.4853 -2.1051 2.2849 33 1 6.4339 -4.6032 2.4894 34 1 6.2199 -3.5347 3.8870 35 1 8.4731 -4.7805 3.6690 36 1 8.5248 -3.0455 4.0275 37 1 10.1560 -3.9473 2.2370 38 1 9.2330 -2.4862 1.8449 39 1 7.9980 -5.0806 1.0908 40 1 9.4414 -4.5710 0.1757 41 1 7.6737 -3.5416 -1.0136 42 1 8.2638 -2.2435 0.0406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -133.366650 kcal Electronic energy + Delta-G solvation = -23796.270845 eV Core-core repulsion = 20355.101761 eV Total energy + Delta-G solvation = -3441.169084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13985 -39.32816 -37.96649 -35.75361 -34.85856 -33.35708 -32.13319 -31.85325 -28.31032 -27.96951 -25.01385 -24.51256 -22.96208 -21.73861 -20.12346 -19.18286 -18.65471 -17.78276 -17.31409 -16.51416 -16.02017 -15.54212 -15.38320 -14.98241 -14.90262 -14.44567 -14.00356 -13.74487 -13.07574 -12.83923 -12.76178 -12.68019 -12.64481 -12.34981 -11.96602 -11.91659 -11.78567 -11.34713 -11.14566 -10.92725 -10.69764 -10.56680 -10.37567 -10.28052 -10.14644 -10.13031 -10.11267 -9.96801 -9.81737 -9.17088 -8.49484 -7.90999 -6.44703 -4.03957 2.64987 2.93825 3.11959 3.16573 3.23409 3.82807 4.04946 4.29989 4.73844 4.82439 4.92398 4.98780 5.26351 5.28063 5.30202 5.36676 5.40459 5.51520 5.61553 5.64794 5.66665 5.78012 5.86040 5.94502 5.96126 6.00221 6.12639 6.20511 6.27509 6.30142 6.34934 6.45586 6.52838 6.60602 6.83037 6.84576 6.93193 7.44671 8.22711 8.30635 8.43372 8.89729 9.22535 9.66402 10.67449 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.005645 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.162108 B = 4959.295138 C = 5720.872302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.058 3.942 3 Si 0.861 3.139 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.313 4.313 8 H 0.108 0.892 9 N -0.456 5.456 10 C 0.099 3.901 11 C 0.456 3.544 12 O -0.494 6.494 13 O -0.526 6.526 14 C 0.485 3.515 15 O -0.541 6.541 16 C -0.142 4.142 17 C -0.067 4.067 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.275 0.725 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.400 0.600 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.605 -0.841 -2.411 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.148 4.148 3 Si 0.687 3.313 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.440 4.440 8 H 0.125 0.875 9 N -0.179 5.179 10 C -0.027 4.027 11 C 0.295 3.705 12 O -0.379 6.379 13 O -0.338 6.338 14 C 0.274 3.726 15 O -0.421 6.421 16 C -0.183 4.183 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.258 0.742 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.134 -1.180 -1.521 16.248 hybrid contribution 0.156 0.677 -0.817 1.072 sum 16.290 -0.503 -2.339 16.465 Atomic orbital electron populations 1.69753 1.06162 1.27941 1.45609 1.25395 0.95220 0.98111 0.96085 0.87182 0.81664 0.84244 0.78218 1.19875 1.20654 1.18225 1.19058 0.84864 0.96791 1.43252 0.87477 1.43452 1.10351 1.40763 1.23356 1.21613 1.03195 0.94684 0.83233 1.24714 0.72997 0.87725 0.85071 1.90717 1.42333 1.18474 1.86375 1.84585 1.81597 1.48914 1.18698 1.20242 0.86267 0.82495 0.83599 1.90550 1.79825 1.42905 1.28806 1.21889 0.94751 1.01050 1.00573 1.19797 0.94551 0.99355 0.94913 1.21472 1.02632 0.97343 0.93512 1.21258 0.94470 0.99499 0.99736 1.21946 0.95481 1.00844 0.97159 1.21323 0.98126 1.00872 0.95072 1.21300 0.99016 0.98672 0.96327 1.20563 0.96033 0.99152 0.99140 0.91469 0.86951 0.87848 0.74158 0.90582 0.90180 0.90703 0.92928 0.89608 0.92148 0.92597 0.92860 0.92768 0.92986 0.92166 0.91553 0.92395 0.92594 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.96 55.50 0.77 -23.87 16 2 C 0.06 1.57 5.28 -17.47 -0.09 1.48 16 3 Si 0.86 19.31 24.97 -169.99 -4.25 15.06 16 4 H -0.27 -5.61 6.72 56.52 0.38 -5.23 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.31 -8.83 9.36 -14.93 -0.14 -8.97 16 8 H 0.11 3.46 7.92 -52.49 -0.42 3.04 16 9 N -0.46 -10.96 1.74 -116.10 -0.20 -11.16 16 10 C 0.10 1.96 4.33 -5.20 -0.02 1.93 16 11 C 0.46 8.56 7.63 36.00 0.27 8.83 16 12 O -0.49 -11.01 17.00 -18.75 -0.32 -11.33 16 13 O -0.53 -7.48 13.42 -39.25 -0.53 -8.00 16 14 C 0.48 11.07 6.87 -10.99 -0.08 11.00 16 15 O -0.54 -14.07 13.92 5.54 0.08 -14.00 16 16 C -0.14 -2.43 3.71 -27.89 -0.10 -2.53 16 17 C -0.07 -1.04 1.39 -93.49 -0.13 -1.17 16 18 C -0.11 -1.76 4.62 -27.30 -0.13 -1.88 16 19 C -0.11 -1.57 5.32 -27.40 -0.15 -1.72 16 20 C -0.12 -1.32 5.85 -25.62 -0.15 -1.47 16 21 C -0.12 -1.22 5.31 -27.44 -0.15 -1.36 16 22 C -0.12 -1.27 5.61 -27.35 -0.15 -1.42 16 23 C -0.11 -1.36 4.44 -29.60 -0.13 -1.50 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.11 2.31 3.61 -51.93 -0.19 2.12 16 26 H 0.10 1.62 6.73 -51.93 -0.35 1.27 16 27 H 0.40 3.83 9.10 45.56 0.41 4.24 16 28 H 0.08 1.25 7.34 -51.93 -0.38 0.86 16 29 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 30 H 0.07 1.31 7.26 -51.93 -0.38 0.94 16 31 H 0.05 0.74 6.97 -51.92 -0.36 0.37 16 32 H 0.09 1.65 5.76 -51.93 -0.30 1.35 16 33 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.64 6.62 -51.93 -0.34 0.29 16 39 H 0.07 0.78 6.98 -51.93 -0.36 0.41 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 42 H 0.06 0.66 7.46 -51.93 -0.39 0.28 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -32.83 322.51 -6.19 -39.02 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.47 Total: 8.20 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.14 Total: 1.22 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.57 Total: -35.04 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.77 Total: -33.33 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.25 Total: 15.06 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.83 -6.19 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.348 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds