Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 C 1.52998 * 109.47001 * 240.00199 * 2 1 3 5 5 C 1.52994 * 109.47453 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.47112 * 59.99792 * 5 4 2 7 7 C 1.53007 * 109.47020 * 300.00271 * 6 5 4 8 8 H 1.08995 * 109.46842 * 300.00106 * 7 6 5 9 9 C 1.50694 * 109.47000 * 179.97438 * 7 6 5 10 10 O 1.21293 * 120.00225 * 274.11392 * 9 7 6 11 11 N 1.34779 * 120.00201 * 94.11547 * 9 7 6 12 12 C 1.37100 * 120.00220 * 176.19114 * 11 9 7 13 13 H 1.08002 * 120.00036 * 30.15132 * 12 11 9 14 14 C 1.38945 * 119.99743 * 210.14845 * 12 11 9 15 15 N 1.31417 * 120.00018 * 39.71949 * 14 12 11 16 16 Si 1.86802 * 120.00150 * 219.44097 * 14 12 11 17 17 H 1.48496 * 109.47172 * 180.27960 * 16 14 12 18 18 H 1.48504 * 109.47115 * 300.27844 * 16 14 12 19 19 H 1.48503 * 109.47021 * 60.27764 * 16 14 12 20 20 C 1.46499 * 119.99633 * 356.19073 * 11 9 7 21 21 C 1.50706 * 109.47346 * 274.40791 * 20 11 9 22 22 O 1.20828 * 119.99390 * 0.02562 * 21 20 11 23 23 O 1.34229 * 120.00416 * 180.02562 * 21 20 11 24 24 C 1.52999 * 109.47046 * 120.00195 * 2 1 3 25 25 H 1.09001 * 109.47188 * 300.00291 * 1 2 3 26 26 H 1.09003 * 109.47132 * 59.99596 * 1 2 3 27 27 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46822 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47086 * 299.99826 * 3 2 1 30 30 H 1.08992 * 109.47236 * 60.00416 * 3 2 1 31 31 H 1.09004 * 109.47010 * 300.00268 * 4 2 1 32 32 H 1.09004 * 109.47505 * 59.99942 * 4 2 1 33 33 H 1.08992 * 109.47715 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.47198 * 300.00112 * 5 4 2 35 35 H 1.08995 * 109.46924 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.46969 * 59.99733 * 6 5 4 37 37 H 0.97003 * 119.99930 * 5.76513 * 15 14 12 38 38 H 1.09002 * 109.47670 * 34.40768 * 20 11 9 39 39 H 1.08994 * 109.47045 * 154.40850 * 20 11 9 40 40 H 0.96700 * 116.99786 * 179.97438 * 23 21 20 41 41 H 1.08997 * 109.46728 * 60.00013 * 24 2 1 42 42 H 1.09001 * 109.46730 * 299.99794 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0795 -1.4435 0.0002 7 6 3.5695 -0.7222 1.2495 8 1 3.9332 0.3053 1.2497 9 6 4.0708 -1.4333 2.4799 10 8 3.4522 -2.3741 2.9311 11 7 5.2066 -1.0241 3.0791 12 6 5.6213 -1.6200 4.2421 13 1 5.3834 -2.6561 4.4326 14 6 6.3476 -0.8909 5.1756 15 7 6.0305 0.3602 5.4232 16 14 7.7700 -1.6913 6.0843 17 1 8.3722 -0.7107 7.0229 18 1 7.2728 -2.8649 6.8463 19 1 8.7956 -2.1345 5.1061 20 6 5.9980 0.0576 2.4876 21 6 6.9347 -0.5126 1.4538 22 8 6.9402 -1.7007 1.2335 23 8 7.7629 0.2991 0.7778 24 6 2.0400 -0.7213 1.2492 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.9332 -1.2360 -2.1387 34 1 3.9337 0.3057 -1.2488 35 1 5.1694 -1.4435 0.0006 36 1 3.7157 -2.4710 0.0000 37 1 5.2398 0.7495 5.0179 38 1 5.3315 0.7792 2.0152 39 1 6.5760 0.5532 3.2675 40 1 8.3454 -0.1128 0.1251 41 1 1.6766 -1.7489 1.2491 42 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833559253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -142.238926 kcal Electronic energy + Delta-G solvation = -24428.619354 eV Core-core repulsion = 20987.065540 eV Total energy + Delta-G solvation = -3441.553814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30204 -39.36531 -37.83535 -35.67815 -34.86834 -33.08989 -31.82837 -30.58251 -27.87945 -27.26920 -26.20402 -24.97505 -22.75301 -21.52886 -21.27144 -18.98499 -18.20757 -17.67908 -17.33113 -16.37073 -16.06104 -15.54376 -14.87619 -14.54616 -14.43421 -14.04412 -13.91025 -13.71029 -13.58408 -12.88561 -12.70636 -12.47830 -12.20127 -11.99468 -11.94680 -11.77770 -11.56960 -11.41155 -11.05094 -10.96901 -10.90830 -10.77116 -10.66901 -10.25887 -10.19865 -10.16027 -10.09210 -9.87189 -9.75101 -8.95789 -8.36745 -7.93971 -6.79956 -3.94018 2.74664 3.25771 3.27155 3.36878 3.55616 3.90167 4.19711 4.55876 4.76278 4.78909 4.90551 5.00147 5.24301 5.31378 5.41288 5.49446 5.49589 5.57458 5.69221 5.73083 5.80063 5.81847 5.84208 5.91153 6.03574 6.04749 6.09466 6.14117 6.14185 6.20509 6.38651 6.42630 6.46174 6.52945 6.64485 6.75341 6.91848 7.79171 8.14036 8.37215 8.51067 8.87841 9.29215 9.79456 10.44459 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.006121 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.092487 B = 4572.961638 C = 5142.295888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.106 4.106 8 H 0.078 0.922 9 C 0.473 3.527 10 O -0.563 6.563 11 N -0.434 5.434 12 C -0.415 4.415 13 H 0.090 0.910 14 C 0.018 3.982 15 N -0.852 5.852 16 Si 1.054 2.946 17 H -0.279 1.279 18 H -0.280 1.280 19 H -0.284 1.284 20 C 0.103 3.897 21 C 0.455 3.545 22 O -0.496 6.496 23 O -0.526 6.526 24 C -0.085 4.085 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.277 0.723 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.398 0.602 41 H 0.072 0.928 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 5.038 -12.525 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.127 4.127 8 H 0.096 0.904 9 C 0.263 3.737 10 O -0.445 6.445 11 N -0.155 5.155 12 C -0.541 4.541 13 H 0.108 0.892 14 C -0.191 4.191 15 N -0.484 5.484 16 Si 0.880 3.120 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.211 1.211 20 C -0.024 4.024 21 C 0.295 3.705 22 O -0.382 6.382 23 O -0.337 6.337 24 C -0.123 4.123 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.592 4.700 -10.941 12.187 hybrid contribution -0.635 -0.552 -1.550 1.764 sum -3.227 4.148 -12.492 13.552 Atomic orbital electron populations 1.21838 0.94771 1.01662 1.01351 1.20558 0.95056 0.95470 0.95502 1.21980 1.01503 0.95383 1.01320 1.21581 0.95563 1.00387 0.96818 1.21584 0.95710 1.00628 0.97639 1.21545 1.01054 0.99626 0.92657 1.21344 0.97107 0.99706 0.94574 0.90420 1.20228 0.80908 0.86601 0.85970 1.90515 1.57695 1.29522 1.66729 1.43202 1.17625 1.33239 1.21406 1.20112 1.39691 0.98309 0.96001 0.89229 1.26279 1.01593 0.95745 0.95513 1.70829 1.25942 1.16410 1.35194 0.83739 0.76012 0.75996 0.76275 1.20438 1.20580 1.21074 1.21166 0.93972 0.92349 0.94878 1.24858 0.79438 0.85683 0.80529 1.90686 1.66745 1.17199 1.63583 1.84600 1.50941 1.45373 1.52779 1.21362 0.93282 1.01269 0.96423 0.92670 0.92986 0.92718 0.92122 0.93048 0.92685 0.92012 0.92368 0.92260 0.91872 0.91386 0.91581 0.91255 0.88284 0.85302 0.74426 0.90976 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.47 37.16 0.31 -1.25 16 2 C -0.07 -0.84 0.77 -154.51 -0.12 -0.96 16 3 C -0.14 -1.70 7.78 37.16 0.29 -1.41 16 4 C -0.11 -1.28 4.73 -26.74 -0.13 -1.41 16 5 C -0.12 -1.54 5.65 -26.73 -0.15 -1.69 16 6 C -0.11 -1.89 5.19 -26.72 -0.14 -2.03 16 7 C -0.11 -1.95 1.72 -91.80 -0.16 -2.11 16 8 H 0.08 1.31 4.10 -51.93 -0.21 1.10 16 9 C 0.47 11.57 6.49 -10.99 -0.07 11.50 16 10 O -0.56 -15.98 16.02 5.55 0.09 -15.89 16 11 N -0.43 -10.88 1.97 -116.10 -0.23 -11.10 16 12 C -0.42 -11.67 8.84 -14.93 -0.13 -11.80 16 13 H 0.09 2.77 7.72 -52.49 -0.41 2.36 16 14 C 0.02 0.48 4.43 -17.47 -0.08 0.40 16 15 N -0.85 -22.65 12.26 55.50 0.68 -21.97 16 16 Si 1.05 23.73 30.05 -169.99 -5.11 18.63 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.10 2.15 5.20 -5.19 -0.03 2.13 16 21 C 0.45 8.87 7.34 36.01 0.26 9.13 16 22 O -0.50 -11.22 15.42 -18.75 -0.29 -11.51 16 23 O -0.53 -7.85 13.42 -39.25 -0.53 -8.38 16 24 C -0.09 -1.42 3.66 -26.76 -0.10 -1.52 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 35 H 0.07 1.25 5.03 -51.93 -0.26 0.99 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.28 7.36 8.14 -40.82 -0.33 7.03 16 38 H 0.10 1.74 5.86 -51.93 -0.30 1.44 16 39 H 0.13 2.86 5.76 -51.93 -0.30 2.56 16 40 H 0.40 4.10 9.10 45.56 0.41 4.51 16 41 H 0.07 1.32 7.85 -51.93 -0.41 0.91 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -32.77 326.93 -6.10 -38.88 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.41 Total: 7.45 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.23 Total: -1.02 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.45 Total: -33.08 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.73 Total: -35.78 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.11 Total: 18.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.77 -6.10 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833559253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.363 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds