Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47015 * 2 1 4 4 C 1.53000 * 109.47178 * 120.00386 * 2 1 3 5 5 C 1.53001 * 109.47178 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46905 * 299.99773 * 5 4 2 7 7 C 1.53000 * 109.47017 * 60.00128 * 6 5 4 8 8 H 1.08990 * 109.47232 * 60.00126 * 7 6 5 9 9 C 1.50707 * 109.46807 * 180.02562 * 7 6 5 10 10 O 1.21283 * 120.00307 * 103.03936 * 9 7 6 11 11 N 1.34778 * 119.99281 * 283.03547 * 9 7 6 12 12 C 1.37104 * 119.99273 * 185.09166 * 11 9 7 13 13 H 1.07992 * 120.00381 * 319.06683 * 12 11 9 14 14 C 1.38950 * 119.99718 * 139.06985 * 12 11 9 15 15 N 1.31412 * 120.00357 * 163.39792 * 14 12 11 16 16 Si 1.86809 * 119.99928 * 343.38951 * 14 12 11 17 17 H 1.48500 * 109.46708 * 95.83988 * 16 14 12 18 18 H 1.48490 * 109.47479 * 215.83889 * 16 14 12 19 19 H 1.48496 * 109.46879 * 335.84544 * 16 14 12 20 20 C 1.46498 * 120.00581 * 4.82378 * 11 9 7 21 21 C 1.50696 * 109.47348 * 94.20580 * 20 11 9 22 22 O 1.20827 * 119.99765 * 3.74560 * 21 20 11 23 23 O 1.34230 * 120.00272 * 183.74972 * 21 20 11 24 24 C 1.53001 * 109.47178 * 299.99704 * 7 6 5 25 25 H 1.09003 * 109.47113 * 299.99672 * 1 2 3 26 26 H 1.09000 * 109.47018 * 59.99705 * 1 2 3 27 27 H 1.09002 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47039 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47469 * 300.00019 * 3 2 1 30 30 H 1.09004 * 109.47437 * 60.00173 * 3 2 1 31 31 H 1.08999 * 109.47331 * 59.99460 * 4 2 1 32 32 H 1.09003 * 109.47051 * 299.99980 * 4 2 1 33 33 H 1.09000 * 109.47018 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.46711 * 59.99685 * 5 4 2 35 35 H 1.08999 * 109.46871 * 300.00090 * 6 5 4 36 36 H 1.09000 * 109.46965 * 179.97438 * 6 5 4 37 37 H 0.96997 * 119.99870 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47043 * 214.21034 * 20 11 9 39 39 H 1.08999 * 109.46886 * 334.20279 * 20 11 9 40 40 H 0.96699 * 117.00532 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.47018 * 180.02562 * 24 7 6 42 42 H 1.09002 * 109.47160 * 300.00026 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2496 8 1 3.9332 0.3053 -1.2498 9 6 4.0707 -1.4333 -2.4801 10 8 3.3249 -2.1516 -3.1116 11 7 5.3479 -1.2710 -2.8788 12 6 5.7758 -1.8329 -4.0539 13 1 5.4573 -2.8290 -4.3236 14 6 6.6192 -1.1208 -4.8979 15 7 7.2873 -1.7470 -5.8405 16 14 6.8033 0.7268 -4.6927 17 1 8.0005 1.0158 -3.8630 18 1 6.9611 1.3597 -6.0267 19 1 5.5947 1.2735 -4.0252 20 6 6.2774 -0.4893 -2.0596 21 6 7.0405 -1.4130 -1.1456 22 8 6.8789 -2.6079 -1.2224 23 8 7.8995 -0.9083 -0.2461 24 6 2.0394 -0.7216 -1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7490 1.2492 32 1 1.6767 -0.2075 2.1392 33 1 3.9333 -1.2354 2.1390 34 1 3.9337 0.3057 1.2486 35 1 3.7157 -2.4710 -0.0002 36 1 5.1695 -1.4435 -0.0009 37 1 7.8758 -1.2498 -6.4298 38 1 6.9762 0.0397 -2.7076 39 1 5.7181 0.2316 -1.4633 40 1 8.3662 -1.5400 0.3180 41 1 1.6761 -0.2081 -2.1395 42 1 1.6757 -1.7492 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833559254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -131.312633 kcal Electronic energy + Delta-G solvation = -24471.698343 eV Core-core repulsion = 21030.618328 eV Total energy + Delta-G solvation = -3441.080015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44814 -39.41863 -37.94032 -35.71960 -34.79312 -33.23939 -32.05058 -30.73301 -28.06789 -27.31299 -26.31695 -25.39216 -22.71193 -21.71786 -21.40169 -18.75189 -18.27532 -17.71483 -17.30769 -16.54886 -16.03866 -15.78011 -15.03220 -14.92296 -14.48863 -14.14755 -14.00770 -13.71510 -13.27107 -13.00025 -12.80795 -12.66213 -12.47407 -12.16813 -12.02053 -11.86441 -11.78277 -11.41095 -11.29217 -11.07652 -11.01648 -10.84871 -10.80666 -10.54931 -10.24659 -10.09568 -9.96738 -9.96326 -9.86860 -9.12040 -8.53766 -7.89215 -6.39955 -4.05072 2.68553 2.94002 3.10904 3.14036 3.21539 3.80610 4.05397 4.26666 4.70780 4.73082 4.82580 4.98859 5.15060 5.25183 5.29576 5.40370 5.41951 5.45355 5.55788 5.63749 5.67132 5.72182 5.74528 5.78393 5.86198 5.96221 5.98830 6.05076 6.09799 6.10946 6.30141 6.35738 6.37816 6.43682 6.58747 6.68411 6.89012 7.47769 8.24785 8.34848 8.45064 8.89580 9.23464 9.64208 10.72131 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.006784 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.009625 B = 4126.634310 C = 4667.174697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.110 4.110 7 C -0.111 4.111 8 H 0.085 0.915 9 C 0.489 3.511 10 O -0.544 6.544 11 N -0.456 5.456 12 C -0.308 4.308 13 H 0.107 0.893 14 C 0.057 3.943 15 N -0.863 5.863 16 Si 0.864 3.136 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.259 1.259 20 C 0.099 3.901 21 C 0.455 3.545 22 O -0.484 6.484 23 O -0.528 6.528 24 C -0.084 4.084 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.274 0.726 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.400 0.600 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 8.215 15.180 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.133 4.133 8 H 0.103 0.897 9 C 0.277 3.723 10 O -0.423 6.423 11 N -0.179 5.179 12 C -0.435 4.435 13 H 0.125 0.875 14 C -0.148 4.148 15 N -0.500 5.500 16 Si 0.691 3.309 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.183 1.183 20 C -0.027 4.027 21 C 0.294 3.706 22 O -0.369 6.369 23 O -0.340 6.340 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.258 0.742 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.001 7.755 14.369 17.396 hybrid contribution 0.889 0.543 0.305 1.086 sum -5.112 8.298 14.674 17.616 Atomic orbital electron populations 1.21833 0.94687 1.01719 1.01368 1.20577 0.95166 0.95470 0.95497 1.21986 1.01494 0.95414 1.01363 1.21587 0.95435 1.00476 0.96894 1.21583 0.95819 1.00747 0.97427 1.21565 1.00109 1.00015 0.93062 1.21430 0.97606 0.99983 0.94258 0.89718 1.20305 0.81600 0.84060 0.86294 1.90561 1.55285 1.39278 1.57153 1.43394 1.05999 1.49192 1.19272 1.19046 1.29369 1.01498 0.93633 0.87517 1.25407 0.95830 0.98079 0.95514 1.69702 1.24860 1.36092 1.19316 0.87119 0.78848 0.86575 0.78362 1.19861 1.20672 1.18327 1.21566 0.94486 0.93368 0.93284 1.24499 0.77461 0.89786 0.78808 1.90737 1.62490 1.16955 1.66710 1.84578 1.55119 1.45943 1.48386 1.21357 0.92837 1.01442 0.96567 0.92990 0.92650 0.92666 0.92098 0.92694 0.93008 0.91931 0.92262 0.92067 0.91631 0.91233 0.92343 0.91513 0.88030 0.87555 0.74178 0.91566 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.47 37.16 0.31 -1.13 16 2 C -0.07 -0.79 0.77 -154.51 -0.12 -0.91 16 3 C -0.15 -1.56 7.78 37.15 0.29 -1.28 16 4 C -0.11 -1.17 4.73 -26.73 -0.13 -1.30 16 5 C -0.12 -1.38 5.65 -26.73 -0.15 -1.53 16 6 C -0.11 -1.69 5.01 -26.73 -0.13 -1.83 16 7 C -0.11 -1.91 1.41 -91.77 -0.13 -2.04 16 8 H 0.08 1.31 4.94 -51.93 -0.26 1.05 16 9 C 0.49 11.38 6.83 -10.98 -0.07 11.31 16 10 O -0.54 -14.72 15.90 5.55 0.09 -14.63 16 11 N -0.46 -11.12 1.68 -116.10 -0.20 -11.31 16 12 C -0.31 -8.86 9.22 -14.93 -0.14 -9.00 16 13 H 0.11 3.52 7.93 -52.49 -0.42 3.10 16 14 C 0.06 1.59 5.39 -17.47 -0.09 1.49 16 15 N -0.86 -25.25 13.96 55.50 0.77 -24.48 16 16 Si 0.86 19.70 24.79 -169.99 -4.21 15.49 16 17 H -0.27 -5.74 6.79 56.52 0.38 -5.36 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.26 -5.59 7.07 56.52 0.40 -5.19 16 20 C 0.10 1.99 4.41 -5.20 -0.02 1.97 16 21 C 0.46 8.78 6.04 36.00 0.22 9.00 16 22 O -0.48 -11.11 16.76 -18.75 -0.31 -11.43 16 23 O -0.53 -7.67 13.42 -39.26 -0.53 -8.19 16 24 C -0.08 -1.31 3.44 -26.73 -0.09 -1.40 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.95 4.36 -51.93 -0.23 0.72 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 2.12 3.08 -51.93 -0.16 1.96 16 39 H 0.11 1.72 5.71 -51.93 -0.30 1.42 16 40 H 0.40 3.98 9.10 45.56 0.41 4.40 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -33.85 320.65 -5.13 -38.98 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.32 Total: 7.37 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.26 Total: 3.37 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.58 Total: -35.79 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.75 Total: -34.25 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.21 Total: 15.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.85 -5.13 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833559254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.329 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds