Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 C 1.50703 * 109.47338 * 59.99757 * 3 2 1 5 5 O 1.21285 * 119.99749 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99815 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99763 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00307 * 342.87764 * 7 6 4 9 9 C 1.38953 * 120.00361 * 162.60022 * 7 6 4 10 10 N 1.31415 * 119.99821 * 336.98321 * 9 7 6 11 11 Si 1.86802 * 120.00349 * 156.97487 * 9 7 6 12 12 H 1.48500 * 109.46779 * 60.00364 * 11 9 7 13 13 H 1.48498 * 109.47208 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47086 * 300.00544 * 11 9 7 15 15 C 1.46504 * 120.00325 * 359.97438 * 6 4 3 16 16 C 1.50693 * 109.47246 * 276.03704 * 15 6 4 17 17 O 1.20829 * 120.00231 * 359.97438 * 16 15 6 18 18 O 1.34226 * 120.00179 * 179.97438 * 16 15 6 19 19 C 1.53001 * 109.46986 * 119.99477 * 2 1 3 20 20 C 1.52999 * 109.46764 * 60.00304 * 19 2 1 21 21 C 1.53000 * 109.47336 * 59.99898 * 20 19 2 22 22 C 1.53001 * 109.46904 * 299.99776 * 21 20 19 23 23 C 1.52995 * 109.46982 * 60.00331 * 22 21 20 24 24 H 1.09008 * 109.46584 * 60.00390 * 1 2 3 25 25 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47117 * 300.00666 * 1 2 3 27 27 H 1.09008 * 109.47073 * 299.99311 * 3 2 1 28 28 H 1.09004 * 109.47153 * 179.97438 * 3 2 1 29 29 H 0.96999 * 120.00292 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.46459 * 36.03974 * 15 6 4 31 31 H 1.08998 * 109.46772 * 156.03436 * 15 6 4 32 32 H 0.96695 * 117.00382 * 180.02562 * 18 16 15 33 33 H 1.08997 * 109.47310 * 179.97438 * 19 2 1 34 34 H 1.08995 * 109.47156 * 300.00433 * 19 2 1 35 35 H 1.09004 * 109.47153 * 299.99754 * 20 19 2 36 36 H 1.09008 * 109.47073 * 180.02562 * 20 19 2 37 37 H 1.09006 * 109.46987 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47237 * 60.00183 * 21 20 19 39 39 H 1.08992 * 109.47570 * 299.99767 * 22 21 20 40 40 H 1.09004 * 109.46580 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.47449 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47418 * 59.99711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8628 3.4435 1.4434 7 6 1.4054 4.0899 2.5624 8 1 0.5792 3.6791 3.1237 9 6 2.0085 5.2708 2.9780 10 7 3.2437 5.5395 2.6189 11 14 1.0633 6.4765 4.0469 12 1 0.6682 5.8103 5.3139 13 1 1.9233 7.6484 4.3506 14 1 -0.1531 6.9294 3.3255 15 6 2.7052 4.1554 0.4790 16 6 4.1555 3.8689 0.7711 17 8 4.4550 3.1447 1.6908 18 8 5.1147 4.4182 0.0097 19 6 2.0400 -0.7211 1.2493 20 6 1.5300 -2.1636 1.2493 21 6 2.0400 -2.8850 0.0001 22 6 1.5300 -2.1637 -1.2491 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 3.6649 6.3636 2.9093 30 1 2.4647 3.8206 -0.5300 31 1 2.5231 5.2271 0.5593 32 1 6.0304 4.2049 0.2354 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -0.2073 2.1392 35 1 0.4399 -2.1636 1.2493 36 1 1.8929 -2.6773 2.1396 37 1 1.6770 -3.9128 0.0004 38 1 3.1300 -2.8850 0.0002 39 1 0.4401 -2.1637 -1.2492 40 1 1.8938 -2.6774 -2.1391 41 1 1.6771 -0.2076 -2.1394 42 1 3.1301 -0.7213 -1.2492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833565136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -136.479770 kcal Electronic energy + Delta-G solvation = -24259.521176 eV Core-core repulsion = 20818.217097 eV Total energy + Delta-G solvation = -3441.304079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91770 -39.02411 -37.63591 -35.25989 -34.51184 -32.65909 -31.73597 -30.40310 -27.85796 -27.41332 -26.28837 -24.38204 -22.31385 -21.30043 -20.97715 -18.87795 -17.82685 -17.17525 -16.87672 -16.20355 -15.68128 -15.06109 -14.77410 -14.48062 -14.40157 -14.09200 -14.04450 -13.58634 -13.27248 -12.74965 -12.50546 -12.05746 -11.98513 -11.74119 -11.65924 -11.30784 -11.26636 -11.14424 -11.05806 -10.94126 -10.60415 -10.51915 -10.47929 -10.35646 -10.21316 -9.84938 -9.74666 -9.59000 -9.54813 -9.00301 -8.18133 -7.85644 -6.44202 -3.87088 3.16675 3.24069 3.27847 3.45163 3.65903 4.09119 4.25249 4.70165 4.95954 5.00469 5.04933 5.13923 5.42099 5.50592 5.59546 5.70438 5.76292 5.81053 5.84050 5.89320 5.97553 6.07842 6.12900 6.18392 6.25451 6.29615 6.32777 6.42240 6.45029 6.48889 6.54631 6.65653 6.75751 6.82354 7.10769 7.19610 7.48334 7.56155 8.02833 8.39399 9.02666 9.12520 9.33717 9.89562 10.64805 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.005648 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.351466 B = 4955.907332 C = 5667.701591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.128 4.128 4 C 0.466 3.534 5 O -0.564 6.564 6 N -0.434 5.434 7 C -0.307 4.307 8 H 0.107 0.893 9 C 0.029 3.971 10 N -0.880 5.880 11 Si 0.926 3.074 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.147 3.853 16 C 0.487 3.513 17 O -0.500 6.500 18 O -0.536 6.536 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.110 4.110 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.270 0.730 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.392 0.608 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -7.057 -9.416 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 C -0.168 4.168 4 C 0.256 3.744 5 O -0.448 6.448 6 N -0.154 5.154 7 C -0.434 4.434 8 H 0.125 0.875 9 C -0.173 4.173 10 N -0.519 5.519 11 Si 0.753 3.247 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.020 3.980 16 C 0.327 3.673 17 O -0.385 6.385 18 O -0.347 6.347 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.148 4.148 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.248 0.752 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.468 -7.296 -8.798 11.439 hybrid contribution 0.722 0.725 0.662 1.219 sum 0.254 -6.571 -8.136 10.462 Atomic orbital electron populations 1.22178 0.94494 1.01118 1.03134 1.20128 0.96141 0.92606 0.94593 1.21706 1.01207 0.96190 0.97721 1.20025 0.84752 0.81210 0.88394 1.90373 1.41500 1.64201 1.48740 1.43484 1.42702 1.08825 1.20378 1.19641 1.14652 1.04121 1.05000 0.87521 1.25215 0.94706 0.99295 0.98127 1.69829 1.09915 1.25459 1.46743 0.85989 0.79243 0.79378 0.80082 1.19868 1.21105 1.19891 1.20615 0.83918 1.01778 0.91715 1.23865 0.88833 0.75688 0.78884 1.90617 1.83013 1.36482 1.28411 1.84523 1.19429 1.71498 1.59263 1.21813 0.99294 0.94508 0.99955 1.21558 1.00893 0.96395 0.96663 1.21545 1.00430 0.98216 0.95400 1.21532 1.00969 0.95725 0.97240 1.21625 1.00196 0.95328 0.97605 0.94303 0.93297 0.89155 0.90736 0.90789 0.91959 0.90463 0.85834 0.75207 0.93443 0.88285 0.91883 0.92829 0.92880 0.92492 0.91763 0.92815 0.92418 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 7.48 37.16 0.28 -2.22 16 2 C -0.03 -0.56 0.51 -154.51 -0.08 -0.64 16 3 C -0.13 -2.35 3.38 -27.88 -0.09 -2.45 16 4 C 0.47 10.87 6.82 -10.98 -0.07 10.80 16 5 O -0.56 -14.41 10.99 5.55 0.06 -14.35 16 6 N -0.43 -10.70 2.18 -116.10 -0.25 -10.95 16 7 C -0.31 -8.30 9.31 -14.93 -0.14 -8.44 16 8 H 0.11 3.02 7.39 -52.48 -0.39 2.63 16 9 C 0.03 0.76 4.82 -17.47 -0.08 0.67 16 10 N -0.88 -23.09 9.35 55.50 0.52 -22.57 16 11 Si 0.93 20.41 29.61 -169.99 -5.03 15.37 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 15 C 0.15 3.14 4.97 -5.19 -0.03 3.11 16 16 C 0.49 10.70 5.85 36.00 0.21 10.91 16 17 O -0.50 -12.94 16.70 -18.75 -0.31 -13.26 16 18 O -0.54 -9.55 13.42 -39.25 -0.53 -10.08 16 19 C -0.12 -2.09 4.43 -26.73 -0.12 -2.21 16 20 C -0.12 -1.71 5.65 -26.73 -0.15 -1.86 16 21 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 22 C -0.12 -1.41 5.65 -26.73 -0.15 -1.56 16 23 C -0.11 -1.48 4.73 -26.73 -0.13 -1.61 16 24 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.72 4.81 -51.93 -0.25 0.47 16 26 H 0.09 1.78 5.51 -51.93 -0.29 1.49 16 27 H 0.07 1.20 7.42 -51.92 -0.39 0.82 16 28 H 0.07 1.39 7.51 -51.93 -0.39 1.00 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.08 1.34 6.69 -51.93 -0.35 1.00 16 31 H 0.12 2.75 6.47 -51.93 -0.34 2.42 16 32 H 0.39 5.37 9.10 45.56 0.41 5.79 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 2.13 5.51 -51.93 -0.29 1.84 16 35 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 36 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -31.20 319.84 -6.88 -38.08 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.44 Total: 10.05 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.71 Total: 2.88 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.27 Total: -33.52 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.78 Total: -37.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.20 -6.88 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833565136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.398 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds