Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 C 1.50703 * 109.47338 * 59.99757 * 3 2 1 5 5 O 1.21285 * 119.99749 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99815 * 180.02562 * 4 3 2 7 7 C 1.37093 * 119.99763 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00307 * 342.87764 * 7 6 4 9 9 C 1.38953 * 120.00361 * 162.60022 * 7 6 4 10 10 N 1.31415 * 119.99821 * 336.98321 * 9 7 6 11 11 Si 1.86802 * 120.00349 * 156.97487 * 9 7 6 12 12 H 1.48500 * 109.46779 * 60.00364 * 11 9 7 13 13 H 1.48498 * 109.47208 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47086 * 300.00544 * 11 9 7 15 15 C 1.46504 * 120.00325 * 359.97438 * 6 4 3 16 16 C 1.50693 * 109.47246 * 276.03704 * 15 6 4 17 17 O 1.20829 * 120.00231 * 359.97438 * 16 15 6 18 18 O 1.34226 * 120.00179 * 179.97438 * 16 15 6 19 19 C 1.53001 * 109.46986 * 119.99477 * 2 1 3 20 20 C 1.52999 * 109.46764 * 60.00304 * 19 2 1 21 21 C 1.53000 * 109.47336 * 59.99898 * 20 19 2 22 22 C 1.53001 * 109.46904 * 299.99776 * 21 20 19 23 23 C 1.52995 * 109.46982 * 60.00331 * 22 21 20 24 24 H 1.09008 * 109.46584 * 60.00390 * 1 2 3 25 25 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47117 * 300.00666 * 1 2 3 27 27 H 1.09008 * 109.47073 * 299.99311 * 3 2 1 28 28 H 1.09004 * 109.47153 * 179.97438 * 3 2 1 29 29 H 0.96999 * 120.00292 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.46459 * 36.03974 * 15 6 4 31 31 H 1.08998 * 109.46772 * 156.03436 * 15 6 4 32 32 H 0.96695 * 117.00382 * 180.02562 * 18 16 15 33 33 H 1.08997 * 109.47310 * 179.97438 * 19 2 1 34 34 H 1.08995 * 109.47156 * 300.00433 * 19 2 1 35 35 H 1.09004 * 109.47153 * 299.99754 * 20 19 2 36 36 H 1.09008 * 109.47073 * 180.02562 * 20 19 2 37 37 H 1.09006 * 109.46987 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47237 * 60.00183 * 21 20 19 39 39 H 1.08992 * 109.47570 * 299.99767 * 22 21 20 40 40 H 1.09004 * 109.46580 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.47449 * 179.97438 * 23 22 21 42 42 H 1.09004 * 109.47418 * 59.99711 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8628 3.4435 1.4434 7 6 1.4054 4.0899 2.5624 8 1 0.5792 3.6791 3.1237 9 6 2.0085 5.2708 2.9780 10 7 3.2437 5.5395 2.6189 11 14 1.0633 6.4765 4.0469 12 1 0.6682 5.8103 5.3139 13 1 1.9233 7.6484 4.3506 14 1 -0.1531 6.9294 3.3255 15 6 2.7052 4.1554 0.4790 16 6 4.1555 3.8689 0.7711 17 8 4.4550 3.1447 1.6908 18 8 5.1147 4.4182 0.0097 19 6 2.0400 -0.7211 1.2493 20 6 1.5300 -2.1636 1.2493 21 6 2.0400 -2.8850 0.0001 22 6 1.5300 -2.1637 -1.2491 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 3.6649 6.3636 2.9093 30 1 2.4647 3.8206 -0.5300 31 1 2.5231 5.2271 0.5593 32 1 6.0304 4.2049 0.2354 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -0.2073 2.1392 35 1 0.4399 -2.1636 1.2493 36 1 1.8929 -2.6773 2.1396 37 1 1.6770 -3.9128 0.0004 38 1 3.1300 -2.8850 0.0002 39 1 0.4401 -2.1637 -1.2492 40 1 1.8938 -2.6774 -2.1391 41 1 1.6771 -0.2076 -2.1394 42 1 3.1301 -0.7213 -1.2492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833565136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -155.683089 kcal Electronic energy + Delta-G solvation = -24260.353894 eV Core-core repulsion = 20818.217097 eV Total energy + Delta-G solvation = -3442.136797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50929 -40.58671 -39.20549 -36.96359 -36.31543 -34.05514 -33.57949 -31.54781 -29.58805 -28.97973 -27.57629 -26.20257 -23.46635 -22.87776 -22.34402 -20.49552 -19.13399 -18.96594 -18.64942 -17.95911 -17.38741 -16.50545 -16.34633 -16.16251 -15.85532 -15.75562 -15.34977 -14.95428 -14.75249 -14.21297 -13.87198 -13.60261 -13.58792 -13.36599 -13.12938 -12.73596 -12.70082 -12.61584 -12.46138 -12.36278 -12.22941 -12.11594 -12.08970 -11.79410 -11.71438 -11.41154 -11.07212 -10.95616 -10.89621 -10.78453 -9.93411 -9.76249 -8.40950 -5.90535 1.38636 1.42589 1.52925 1.72733 1.93416 2.28867 2.56649 2.99328 3.14867 3.77682 3.83333 3.87335 4.10168 4.23734 4.32013 4.41427 4.52849 4.54598 4.61245 4.71321 4.72580 4.73446 4.81163 4.89518 4.94410 5.00551 5.11807 5.20508 5.26209 5.27066 5.34257 5.42937 5.47994 5.50978 5.55909 5.73068 5.84303 5.96425 6.09263 6.45276 7.17915 7.35725 7.49888 8.04233 8.65820 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.005648 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.351466 B = 4955.907332 C = 5667.701591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 C -0.120 4.120 4 C 0.456 3.544 5 O -0.596 6.596 6 N -0.451 5.451 7 C -0.339 4.339 8 H 0.078 0.922 9 C -0.002 4.002 10 N -0.893 5.893 11 Si 0.988 3.012 12 H -0.284 1.284 13 H -0.275 1.275 14 H -0.262 1.262 15 C 0.144 3.856 16 C 0.495 3.505 17 O -0.548 6.548 18 O -0.520 6.520 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.272 0.728 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -7.486 -11.947 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.160 4.160 4 C 0.247 3.753 5 O -0.482 6.482 6 N -0.171 5.171 7 C -0.467 4.467 8 H 0.096 0.904 9 C -0.203 4.203 10 N -0.533 5.533 11 Si 0.812 3.188 12 H -0.209 1.209 13 H -0.200 1.200 14 H -0.187 1.187 15 C 0.018 3.982 16 C 0.337 3.663 17 O -0.436 6.436 18 O -0.332 6.332 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.272 0.728 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.227 -7.709 -11.372 13.741 hybrid contribution 0.713 0.848 1.476 1.846 sum 0.486 -6.861 -9.897 12.052 Atomic orbital electron populations 1.22062 0.94443 1.01859 1.01872 1.20183 0.96141 0.91553 0.95623 1.21729 1.00842 0.97249 0.96136 1.20966 0.83763 0.80969 0.89585 1.90376 1.42658 1.64888 1.50263 1.43667 1.43496 1.09580 1.20393 1.19543 1.14965 1.05566 1.06621 0.90392 1.25913 0.95293 0.99968 0.99147 1.69913 1.10479 1.25600 1.47276 0.85083 0.78460 0.77270 0.77996 1.20941 1.20026 1.18681 1.20775 0.83398 1.01059 0.92984 1.23898 0.89614 0.74657 0.78115 1.90607 1.83801 1.38692 1.30548 1.84450 1.20451 1.70349 1.57937 1.21702 0.98418 0.96464 0.98877 1.21521 1.00725 0.94536 0.98395 1.21531 1.00485 0.99033 0.94159 1.21547 1.01187 0.94641 0.97848 1.21591 1.00309 0.96179 0.96136 0.92631 0.91584 0.93160 0.87721 0.91043 0.91814 0.86147 0.86781 0.72808 0.94588 0.93073 0.92023 0.92922 0.90774 0.92429 0.91423 0.90276 0.90464 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 7.48 71.98 0.54 -4.10 16 2 C -0.03 -1.10 0.51 -52.18 -0.03 -1.13 16 3 C -0.12 -4.31 3.38 29.85 0.10 -4.21 16 4 C 0.46 21.89 6.82 87.66 0.60 22.49 16 5 O -0.60 -32.30 10.99 -3.04 -0.03 -32.33 16 6 N -0.45 -22.78 2.18 -639.61 -1.39 -24.17 16 7 C -0.34 -19.08 9.31 84.04 0.78 -18.30 16 8 H 0.08 4.71 7.39 -2.91 -0.02 4.68 16 9 C 0.00 -0.10 4.82 84.93 0.41 0.31 16 10 N -0.89 -47.13 9.35 21.66 0.20 -46.93 16 11 Si 0.99 42.43 29.61 68.60 2.03 44.46 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 15 C 0.14 6.08 4.97 85.63 0.43 6.50 16 16 C 0.50 21.43 5.85 71.23 0.42 21.85 16 17 O -0.55 -28.71 16.70 21.96 0.37 -28.34 16 18 O -0.52 -17.48 13.42 -51.38 -0.69 -18.17 16 19 C -0.12 -4.23 4.43 30.59 0.14 -4.10 16 20 C -0.11 -3.26 5.65 30.59 0.17 -3.09 16 21 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 22 C -0.11 -2.31 5.65 30.59 0.17 -2.14 16 23 C -0.10 -2.47 4.73 30.59 0.14 -2.33 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.07 1.84 4.81 -2.39 -0.01 1.83 16 26 H 0.05 2.03 5.51 -2.39 -0.01 2.02 16 27 H 0.10 3.09 7.42 -2.38 -0.02 3.07 16 28 H 0.07 2.63 7.51 -2.38 -0.02 2.61 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.12 3.92 6.69 -2.39 -0.02 3.90 16 31 H 0.11 5.04 6.47 -2.39 -0.02 5.02 16 32 H 0.41 10.43 9.10 -74.06 -0.67 9.76 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 2.35 5.51 -2.39 -0.01 2.33 16 35 H 0.06 1.76 6.43 -2.38 -0.02 1.74 16 36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.34 6.43 -2.39 -0.02 1.33 16 40 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.16 319.84 4.90 -66.26 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.36 Total: 29.79 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.05 Total: 9.43 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.19 Total: -71.10 kcal Atomic # 8 Polarization: -78.48 SS G_CDS: -0.36 Total: -78.84 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -71.16 4.90 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833565136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.424 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds