Wall clock time and date at job start Tue Mar 31 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47353 * 240.00169 * 2 1 3 5 5 O 1.45200 * 109.47096 * 119.99924 * 2 1 3 6 6 C 1.34233 * 116.99675 * 60.00514 * 5 2 1 7 7 O 1.20821 * 120.00056 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99815 * 179.97438 * 6 5 2 9 9 C 1.50699 * 112.85105 * 311.19521 * 8 6 5 10 10 O 1.21283 * 120.00164 * 228.80191 * 9 8 6 11 11 N 1.34777 * 120.00306 * 48.80280 * 9 8 6 12 12 C 1.46498 * 120.00546 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47493 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00049 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00059 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99864 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46804 * 60.00260 * 17 15 13 19 19 H 1.48504 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47341 * 300.00421 * 17 15 13 21 21 C 1.53782 * 113.61510 * 179.97438 * 8 6 5 22 22 C 1.53781 * 87.08260 * 220.02009 * 21 8 6 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 8 24 24 H 1.08995 * 109.47123 * 299.99507 * 1 2 3 25 25 H 1.09005 * 109.46860 * 59.99705 * 1 2 3 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47566 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47149 * 300.00263 * 3 2 1 29 29 H 1.09004 * 109.46887 * 60.00163 * 3 2 1 30 30 H 1.08997 * 109.46866 * 300.00186 * 4 2 1 31 31 H 1.09005 * 109.47035 * 60.00232 * 4 2 1 32 32 H 1.09006 * 109.47245 * 179.97438 * 4 2 1 33 33 H 0.97001 * 119.99598 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.46877 * 300.00500 * 12 11 9 35 35 H 1.09002 * 109.47037 * 59.99656 * 12 11 9 36 36 H 0.96999 * 120.00330 * 179.97438 * 16 15 13 37 37 H 1.09001 * 113.61250 * 105.46827 * 21 8 6 38 38 H 1.08997 * 113.61225 * 334.56668 * 21 8 6 39 39 H 1.09002 * 113.61445 * 139.98212 * 22 21 8 40 40 H 1.09002 * 113.61408 * 270.79943 * 22 21 8 41 41 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 42 42 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1182 -2.7438 2.5435 9 6 3.5985 -2.6079 2.7915 10 8 4.2739 -3.5962 2.9868 11 7 4.1718 -1.3882 2.7965 12 6 5.6108 -1.2561 3.0371 13 6 5.9964 0.2000 2.9903 14 1 5.2448 0.9517 2.7999 15 6 7.3088 0.5724 3.1905 16 7 8.2242 -0.3432 3.4219 17 14 7.7869 2.3772 3.1317 18 1 7.0393 3.1215 4.1769 19 1 9.2456 2.5111 3.3757 20 1 7.4559 2.9338 1.7954 21 6 1.6197 -4.1983 2.5703 22 6 1.4018 -4.0130 4.0813 23 6 1.2587 -2.5081 3.7989 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2495 33 1 3.6315 -0.5977 2.6407 34 1 5.8543 -1.6655 4.0175 35 1 6.1592 -1.8017 2.2692 36 1 9.1475 -0.0812 3.5623 37 1 2.3912 -4.9288 2.3268 38 1 0.6966 -4.3538 2.0120 39 1 0.4872 -4.4768 4.4507 40 1 2.2760 -4.2633 4.6825 41 1 0.2368 -2.2007 3.5770 42 1 1.7392 -1.8761 4.5458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834651981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:26 Heat of formation + Delta-G solvation = -114.844712 kcal Electronic energy + Delta-G solvation = -23891.576444 eV Core-core repulsion = 20451.210532 eV Total energy + Delta-G solvation = -3440.365912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32238 -39.56815 -37.41546 -36.31327 -34.33165 -33.92725 -32.31511 -28.43783 -27.44613 -27.37256 -26.61433 -25.68925 -23.08164 -22.43047 -20.80560 -19.88656 -18.91188 -17.78919 -16.60196 -16.45267 -16.02959 -15.41278 -15.27924 -14.92318 -14.65464 -14.29469 -13.96027 -13.87894 -13.65394 -12.87110 -12.54882 -12.41147 -12.35694 -12.09754 -12.05755 -11.89095 -11.86076 -11.69118 -11.53918 -11.44864 -11.00896 -10.91980 -10.90110 -10.84026 -10.43669 -10.36874 -10.32317 -9.85169 -9.41359 -9.11072 -8.73568 -7.90662 -6.16462 -4.22972 2.14937 2.59750 3.24875 3.28963 3.29912 3.31254 3.90761 4.29169 4.34773 4.49176 4.66565 4.72711 4.75877 4.81265 4.90681 5.19155 5.19714 5.44334 5.50948 5.54514 5.61584 5.66617 5.73389 5.75868 5.80803 5.86105 5.89212 6.00216 6.04084 6.13313 6.20698 6.27676 6.40067 6.56156 7.27632 7.39763 7.49582 7.66933 7.84319 7.96274 8.59977 8.74877 9.04154 9.43012 10.93808 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.006322 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.158489 B = 4428.119942 C = 5864.410463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.118 3.882 3 C -0.144 4.144 4 C -0.184 4.184 5 O -0.342 6.342 6 C 0.489 3.511 7 O -0.500 6.500 8 C -0.113 4.113 9 C 0.524 3.476 10 O -0.542 6.542 11 N -0.696 5.696 12 C 0.250 3.750 13 C -0.541 4.541 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.110 4.110 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.689 0.466 -4.143 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.082 3.918 3 C -0.201 4.201 4 C -0.241 4.241 5 O -0.259 6.259 6 C 0.332 3.668 7 O -0.388 6.388 8 C -0.118 4.118 9 C 0.306 3.694 10 O -0.421 6.421 11 N -0.345 5.345 12 C 0.129 3.871 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.730 3.270 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.138 4.138 22 C -0.173 4.173 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.161 -0.346 -4.245 16.713 hybrid contribution 0.115 1.496 -0.333 1.537 sum -16.046 1.149 -4.578 16.726 Atomic orbital electron populations 1.22485 0.94249 1.04455 1.02626 1.22200 0.94025 0.92546 0.83007 1.21879 1.03234 0.92198 1.02793 1.22490 1.02393 1.02765 0.96450 1.86544 1.69353 1.24981 1.45050 1.22999 0.76926 0.80595 0.86319 1.90528 1.35698 1.70064 1.42489 1.22390 0.96715 0.98899 0.93809 1.19231 0.86493 0.84801 0.78890 1.90670 1.63233 1.37547 1.50627 1.46526 1.12678 1.06807 1.68519 1.19157 0.73594 0.97171 0.97164 1.21170 0.94167 0.91544 1.51034 0.91836 1.24934 0.96149 0.98098 0.94735 1.69961 1.02113 1.33159 1.47127 0.86493 0.77509 0.84356 0.78672 1.20030 1.21085 1.20066 1.22805 1.02159 0.91972 0.96829 1.22835 1.02881 0.94899 0.96728 1.22906 0.98957 0.98888 0.94018 0.91993 0.91169 0.89993 0.90625 0.90573 0.91360 0.90040 0.91199 0.91472 0.76605 0.95326 0.95470 0.92401 0.89079 0.88403 0.90535 0.88890 0.88946 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 2 C 0.12 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.62 8.85 37.16 0.33 -1.30 16 4 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 5 O -0.34 -5.27 7.68 -39.27 -0.30 -5.57 16 6 C 0.49 7.75 6.33 36.01 0.23 7.98 16 7 O -0.50 -8.09 11.40 -18.75 -0.21 -8.31 16 8 C -0.11 -1.81 1.22 -155.90 -0.19 -2.00 16 9 C 0.52 10.77 6.65 -10.99 -0.07 10.69 16 10 O -0.54 -12.92 15.76 5.55 0.09 -12.83 16 11 N -0.70 -15.13 5.32 -61.48 -0.33 -15.46 16 12 C 0.25 6.61 5.43 -5.20 -0.03 6.59 16 13 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 C -0.10 -1.41 6.78 -25.92 -0.18 -1.59 16 22 C -0.14 -1.68 7.73 -25.92 -0.20 -1.88 16 23 C -0.11 -1.39 7.23 -25.82 -0.19 -1.58 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.03 5.89 -51.93 -0.31 0.72 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.18 5.89 -51.93 -0.31 0.88 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 7.90 6.30 -40.82 -0.26 7.64 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 1.42 7.43 -51.93 -0.39 1.04 16 38 H 0.10 1.25 7.43 -51.93 -0.39 0.87 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -31.18 341.67 -6.75 -37.92 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.66 Total: 7.28 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.19 Total: 1.32 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.41 Total: -40.64 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.43 Total: -26.71 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.18 -6.75 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834651981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.922 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds