Wall clock time and date at job start Tue Mar 31 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47353 * 240.00169 * 2 1 3 5 5 O 1.45200 * 109.47096 * 119.99924 * 2 1 3 6 6 C 1.34233 * 116.99675 * 60.00514 * 5 2 1 7 7 O 1.20821 * 120.00056 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99815 * 179.97438 * 6 5 2 9 9 C 1.50699 * 112.85105 * 311.19521 * 8 6 5 10 10 O 1.21283 * 120.00164 * 228.80191 * 9 8 6 11 11 N 1.34777 * 120.00306 * 48.80280 * 9 8 6 12 12 C 1.46498 * 120.00546 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47493 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00049 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00059 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99864 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46804 * 60.00260 * 17 15 13 19 19 H 1.48504 * 109.46895 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47341 * 300.00421 * 17 15 13 21 21 C 1.53782 * 113.61510 * 179.97438 * 8 6 5 22 22 C 1.53781 * 87.08260 * 220.02009 * 21 8 6 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 8 24 24 H 1.08995 * 109.47123 * 299.99507 * 1 2 3 25 25 H 1.09005 * 109.46860 * 59.99705 * 1 2 3 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47566 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47149 * 300.00263 * 3 2 1 29 29 H 1.09004 * 109.46887 * 60.00163 * 3 2 1 30 30 H 1.08997 * 109.46866 * 300.00186 * 4 2 1 31 31 H 1.09005 * 109.47035 * 60.00232 * 4 2 1 32 32 H 1.09006 * 109.47245 * 179.97438 * 4 2 1 33 33 H 0.97001 * 119.99598 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.46877 * 300.00500 * 12 11 9 35 35 H 1.09002 * 109.47037 * 59.99656 * 12 11 9 36 36 H 0.96999 * 120.00330 * 179.97438 * 16 15 13 37 37 H 1.09001 * 113.61250 * 105.46827 * 21 8 6 38 38 H 1.08997 * 113.61225 * 334.56668 * 21 8 6 39 39 H 1.09002 * 113.61445 * 139.98212 * 22 21 8 40 40 H 1.09002 * 113.61408 * 270.79943 * 22 21 8 41 41 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 42 42 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1182 -2.7438 2.5435 9 6 3.5985 -2.6079 2.7915 10 8 4.2739 -3.5962 2.9868 11 7 4.1718 -1.3882 2.7965 12 6 5.6108 -1.2561 3.0371 13 6 5.9964 0.2000 2.9903 14 1 5.2448 0.9517 2.7999 15 6 7.3088 0.5724 3.1905 16 7 8.2242 -0.3432 3.4219 17 14 7.7869 2.3772 3.1317 18 1 7.0393 3.1215 4.1769 19 1 9.2456 2.5111 3.3757 20 1 7.4559 2.9338 1.7954 21 6 1.6197 -4.1983 2.5703 22 6 1.4018 -4.0130 4.0813 23 6 1.2587 -2.5081 3.7989 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2495 33 1 3.6315 -0.5977 2.6407 34 1 5.8543 -1.6655 4.0175 35 1 6.1592 -1.8017 2.2692 36 1 9.1475 -0.0812 3.5623 37 1 2.3912 -4.9288 2.3268 38 1 0.6966 -4.3538 2.0120 39 1 0.4872 -4.4768 4.4507 40 1 2.2760 -4.2633 4.6825 41 1 0.2368 -2.2007 3.5770 42 1 1.7392 -1.8761 4.5458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834651981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:26 Heat of formation + Delta-G solvation = -134.276173 kcal Electronic energy + Delta-G solvation = -23892.419056 eV Core-core repulsion = 20451.210532 eV Total energy + Delta-G solvation = -3441.208523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58296 -40.93936 -38.82900 -37.54646 -36.20255 -35.10980 -34.33001 -30.12446 -28.37841 -28.30870 -28.25728 -26.78935 -24.97151 -23.67278 -22.41482 -20.97446 -20.50184 -19.11988 -18.22245 -17.73280 -17.42471 -17.04600 -16.74365 -16.33244 -16.23353 -15.61181 -15.43560 -15.27331 -14.62974 -14.44813 -14.03161 -13.99583 -13.54803 -13.39019 -13.26733 -13.04810 -12.95162 -12.89624 -12.86275 -12.69030 -12.67140 -12.48239 -12.24486 -11.99048 -11.93566 -11.56713 -11.52183 -11.41351 -11.05594 -10.79734 -10.75606 -9.89976 -8.28865 -6.45257 0.87973 1.34985 1.42894 1.47020 1.55141 1.77611 2.24726 2.45857 3.05815 3.06875 3.33222 3.59169 3.70664 3.72274 3.80538 3.82529 3.96123 4.32905 4.56820 4.61868 4.63331 4.67245 4.77686 4.81297 4.86347 4.88248 4.91698 4.95262 5.01091 5.06233 5.13251 5.20784 5.25404 5.29248 5.35435 5.43935 5.46877 5.64474 5.82739 6.62791 6.64537 6.77703 7.20256 7.35426 8.83139 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.006322 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.158489 B = 4428.119942 C = 5864.410463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.355 6.355 6 C 0.490 3.510 7 O -0.503 6.503 8 C -0.122 4.122 9 C 0.522 3.478 10 O -0.581 6.581 11 N -0.693 5.693 12 C 0.267 3.733 13 C -0.554 4.554 14 H 0.081 0.919 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.098 4.098 22 C -0.128 4.128 23 C -0.097 4.097 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.410 0.590 34 H -0.005 1.005 35 H -0.013 1.013 36 H 0.269 0.731 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.246 2.721 -4.482 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.272 6.272 6 C 0.333 3.667 7 O -0.392 6.392 8 C -0.126 4.126 9 C 0.307 3.693 10 O -0.462 6.462 11 N -0.343 5.343 12 C 0.145 3.855 13 C -0.592 4.592 14 H 0.099 0.901 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.136 4.136 22 C -0.165 4.165 23 C -0.135 4.135 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.247 0.753 34 H 0.013 0.987 35 H 0.005 0.995 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.144 0.856 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.765 1.918 -4.594 19.414 hybrid contribution 0.918 0.727 -0.279 1.203 sum -17.848 2.645 -4.873 18.689 Atomic orbital electron populations 1.22423 0.92354 1.03942 1.04311 1.22576 0.95581 0.92961 0.81816 1.21915 1.01905 0.91370 1.04612 1.22477 1.01071 1.02251 0.98099 1.86523 1.69604 1.24743 1.46364 1.22858 0.76972 0.80859 0.85995 1.90530 1.36094 1.70252 1.42289 1.22402 0.93286 1.00836 0.96076 1.19997 0.88633 0.83540 0.77141 1.90645 1.64985 1.38652 1.51956 1.46283 1.10894 1.08064 1.69017 1.18619 0.76086 0.96909 0.93912 1.21513 0.94986 0.91681 1.50990 0.90071 1.26018 0.95963 1.03462 0.93796 1.70123 1.02642 1.35988 1.48077 0.85260 0.77066 0.77747 0.79518 1.18477 1.21027 1.18658 1.22878 1.02109 0.89929 0.98657 1.22794 1.03698 0.94976 0.95030 1.23019 0.99725 0.99084 0.91661 0.91002 0.88808 0.91520 0.92692 0.87719 0.90601 0.91810 0.88372 0.93474 0.75254 0.98733 0.99506 0.92210 0.91360 0.86329 0.86778 0.91117 0.85639 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 8.37 71.98 0.60 -2.71 16 2 C 0.11 2.53 1.13 -10.79 -0.01 2.52 16 3 C -0.14 -2.85 8.85 71.98 0.64 -2.21 16 4 C -0.18 -4.54 8.37 71.98 0.60 -3.93 16 5 O -0.36 -10.58 7.68 -51.45 -0.40 -10.98 16 6 C 0.49 15.10 6.33 71.24 0.45 15.56 16 7 O -0.50 -15.69 11.40 21.98 0.25 -15.44 16 8 C -0.12 -3.82 1.22 -53.09 -0.06 -3.89 16 9 C 0.52 22.25 6.65 87.66 0.58 22.83 16 10 O -0.58 -29.32 15.76 -3.04 -0.05 -29.36 16 11 N -0.69 -31.16 5.32 -466.80 -2.48 -33.64 16 12 C 0.27 14.92 5.43 85.63 0.46 15.39 16 13 C -0.55 -30.40 9.28 25.60 0.24 -30.17 16 14 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 17 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 C -0.10 -2.70 6.78 31.12 0.21 -2.48 16 22 C -0.13 -2.94 7.73 31.12 0.24 -2.70 16 23 C -0.10 -2.26 7.23 31.18 0.23 -2.03 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.51 5.89 -2.38 -0.01 1.49 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.06 1.82 5.89 -2.39 -0.01 1.80 16 31 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.41 16.41 6.30 -92.71 -0.58 15.83 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.07 2.19 7.43 -2.39 -0.02 2.17 16 38 H 0.12 2.78 7.43 -2.39 -0.02 2.76 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.13 2.15 8.10 -2.39 -0.02 2.13 16 42 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -70.86 341.67 4.71 -66.15 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.43 Total: 27.82 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.64 Total: 7.03 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.20 Total: -89.35 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -0.19 Total: -55.78 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -70.86 4.71 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834651981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.124 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds