Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47228 * 2 1 4 4 C 1.33558 * 118.46941 * 95.35677 * 3 2 1 5 5 C 1.41678 * 118.79662 * 0.40740 * 4 3 2 6 6 O 1.21772 * 120.00165 * 263.36347 * 5 4 3 7 7 N 1.34776 * 120.00045 * 83.07795 * 5 4 3 8 8 C 1.36933 * 119.99844 * 354.84560 * 7 5 4 9 9 H 1.07998 * 120.00231 * 323.89478 * 8 7 5 10 10 C 1.38987 * 119.99860 * 143.89657 * 8 7 5 11 11 N 1.31413 * 119.99971 * 161.43831 * 10 8 7 12 12 Si 1.86799 * 120.00039 * 341.43530 * 10 8 7 13 13 H 1.48495 * 109.46983 * 94.66838 * 12 10 8 14 14 H 1.48501 * 109.46923 * 214.66934 * 12 10 8 15 15 H 1.48496 * 109.47188 * 334.66592 * 12 10 8 16 16 C 1.46500 * 120.00130 * 174.84188 * 7 5 4 17 17 C 1.52999 * 109.47249 * 83.89082 * 16 7 5 18 18 O 1.42897 * 109.47343 * 66.61509 * 17 16 7 19 19 C 1.42900 * 114.00002 * 180.02562 * 18 17 16 20 20 C 1.50411 * 122.41342 * 180.13191 * 4 3 2 21 21 C 1.53209 * 109.56519 * 342.60371 * 20 4 3 22 22 C 1.53480 * 108.26444 * 47.37544 * 21 20 4 23 23 O 1.34373 * 118.46621 * 275.63818 * 3 2 1 24 24 H 1.08998 * 109.47540 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46876 * 300.00372 * 1 2 3 26 26 H 1.08997 * 109.47292 * 59.99941 * 1 2 3 27 27 H 1.09000 * 109.46876 * 239.99628 * 2 1 3 28 28 H 1.09005 * 109.47089 * 120.00218 * 2 1 3 29 29 H 0.96993 * 120.00381 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.46907 * 203.88671 * 16 7 5 31 31 H 1.08998 * 109.47275 * 323.88600 * 16 7 5 32 32 H 1.09002 * 109.47309 * 186.62001 * 17 16 7 33 33 H 1.09008 * 109.46564 * 306.61643 * 17 16 7 34 34 H 1.08997 * 109.47098 * 299.99819 * 19 18 17 35 35 H 1.08999 * 109.47258 * 60.00160 * 19 18 17 36 36 H 1.09000 * 109.47166 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.45865 * 102.63208 * 20 4 3 38 38 H 1.08997 * 109.46211 * 222.59023 * 20 4 3 39 39 H 1.09002 * 109.70811 * 167.07060 * 21 20 4 40 40 H 1.08997 * 109.70723 * 287.63980 * 21 20 4 41 41 H 1.08996 * 109.70546 * 56.95751 * 22 21 20 42 42 H 1.08997 * 109.70252 * 177.52924 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3479 1.9845 1.1689 5 6 2.2057 1.2222 2.3547 6 8 1.1991 1.3307 3.0313 7 7 3.1821 0.3727 2.7308 8 6 4.2625 0.1671 1.9151 9 1 4.1351 0.1557 0.8427 10 6 5.5231 -0.0270 2.4672 11 7 6.4773 -0.5760 1.7495 12 14 5.8611 0.4926 4.2293 13 1 5.6678 -0.6693 5.1336 14 1 7.2592 0.9804 4.3420 15 1 4.9252 1.5797 4.6130 16 6 3.0875 -0.3307 4.0124 17 6 2.2291 -1.5858 3.8433 18 8 2.9033 -2.5125 2.9897 19 6 2.1826 -3.7258 2.7646 20 6 2.8545 3.3970 1.2722 21 6 3.3417 3.8690 -0.1015 22 6 2.2710 3.5102 -1.1410 23 8 2.1364 2.0633 -1.1756 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 7.3572 -0.7111 2.1346 30 1 4.0857 -0.6154 4.3451 31 1 2.6306 0.3248 4.7538 32 1 2.0610 -2.0451 4.8174 33 1 1.2712 -1.3137 3.3997 34 1 2.0132 -4.2296 3.7162 35 1 1.2240 -3.4979 2.2985 36 1 2.7610 -4.3755 2.1079 37 1 2.0496 4.0472 1.6151 38 1 3.6800 3.4357 1.9829 39 1 3.4927 4.9484 -0.0870 40 1 4.2784 3.3704 -0.3506 41 1 1.3196 3.9612 -0.8593 42 1 2.5746 3.8752 -2.1222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837235744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -90.905958 kcal Electronic energy + Delta-G solvation = -24668.593707 eV Core-core repulsion = 21229.265858 eV Total energy + Delta-G solvation = -3439.327850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13646 -38.51074 -37.01566 -34.72905 -33.74993 -33.42702 -31.86951 -30.12524 -28.90177 -25.90040 -25.38613 -24.82543 -23.91021 -22.53286 -21.32587 -19.86208 -18.26198 -17.18068 -16.51905 -15.90182 -15.61210 -15.50234 -15.18483 -14.70557 -14.40533 -14.26248 -13.99258 -13.34628 -13.24808 -13.17019 -12.92716 -12.57793 -12.50819 -12.29611 -11.77522 -11.58150 -11.54441 -11.49623 -11.34489 -10.87012 -10.77463 -10.67644 -10.53825 -10.41725 -10.02312 -9.88977 -9.80550 -9.11015 -9.07831 -8.53362 -7.78971 -7.39150 -6.31709 -3.88381 2.65915 3.09481 3.25323 3.29889 3.63858 3.76338 4.21119 4.40793 4.63550 5.05766 5.12624 5.18280 5.31662 5.49946 5.60341 5.64365 5.68214 5.70623 5.78412 5.81302 5.85522 5.88408 5.97978 6.00759 6.05114 6.08027 6.19042 6.25428 6.35327 6.41323 6.50557 6.51709 6.56964 6.73418 6.84233 7.09552 7.41129 7.80566 8.02826 8.19952 8.41398 9.08125 9.45843 9.76512 10.79449 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.008869 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.438542 B = 3156.408075 C = 4058.873314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C 0.113 3.887 4 C -0.233 4.233 5 C 0.533 3.467 6 O -0.605 6.605 7 N -0.450 5.450 8 C -0.318 4.318 9 H 0.107 0.893 10 C 0.069 3.931 11 N -0.861 5.861 12 Si 0.873 3.127 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.265 1.265 16 C 0.099 3.901 17 C 0.054 3.946 18 O -0.360 6.360 19 C 0.032 3.968 20 C -0.054 4.054 21 C -0.155 4.155 22 C 0.062 3.938 23 O -0.318 6.318 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.271 0.729 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 2.308 -1.953 7.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C 0.066 3.934 4 C -0.237 4.237 5 C 0.324 3.676 6 O -0.492 6.492 7 N -0.170 5.170 8 C -0.445 4.445 9 H 0.125 0.875 10 C -0.137 4.137 11 N -0.498 5.498 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.218 1.218 15 H -0.189 1.189 16 C -0.025 4.025 17 C -0.024 4.024 18 O -0.278 6.278 19 C -0.065 4.065 20 C -0.092 4.092 21 C -0.193 4.193 22 C -0.013 4.013 23 O -0.231 6.231 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.020 2.236 -1.913 7.612 hybrid contribution 0.341 0.197 1.210 1.272 sum -6.679 2.433 -0.703 7.143 Atomic orbital electron populations 1.21718 0.94838 1.01417 1.02114 1.20686 0.95749 0.90691 1.04791 1.20671 0.95854 0.93176 0.83652 1.19487 1.11942 0.98536 0.93727 1.16655 0.84386 0.80088 0.86461 1.90659 1.30870 1.70207 1.57423 1.43815 1.20368 1.35514 1.17265 1.19003 0.84125 1.49742 0.91633 0.87515 1.25251 0.95597 0.95214 0.97660 1.69723 1.03863 1.38388 1.37790 0.87044 0.77559 0.79486 0.85747 1.20275 1.21833 1.18930 1.21769 1.00006 0.91896 0.88799 1.22869 0.96225 0.90443 0.92855 1.88191 1.44160 1.26893 1.68526 1.22661 0.96648 0.87802 0.99428 1.20015 1.00231 0.92035 0.96887 1.22164 0.99734 1.01515 0.95840 1.23304 0.98774 0.78864 1.00335 1.86087 1.87727 1.20727 1.28589 0.92656 0.91937 0.92988 0.90677 0.87910 0.91821 0.90590 0.90249 0.94038 0.92893 0.95183 0.94835 0.90085 0.91732 0.90406 0.90543 0.89970 0.91995 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.01 16 2 C -0.08 -1.59 5.32 -27.88 -0.15 -1.74 16 3 C 0.11 2.29 5.10 -35.95 -0.18 2.10 16 4 C -0.23 -4.99 4.18 -105.09 -0.44 -5.43 16 5 C 0.53 12.65 4.86 -14.95 -0.07 12.58 16 6 O -0.60 -15.24 16.62 5.12 0.09 -15.15 16 7 N -0.45 -10.94 1.78 -118.02 -0.21 -11.15 16 8 C -0.32 -8.36 8.31 -15.00 -0.12 -8.48 16 9 H 0.11 3.02 6.46 -52.49 -0.34 2.68 16 10 C 0.07 1.85 5.35 -17.45 -0.09 1.76 16 11 N -0.86 -24.28 13.96 55.50 0.77 -23.51 16 12 Si 0.87 20.83 24.74 -169.99 -4.21 16.62 16 13 H -0.28 -6.38 6.69 56.52 0.38 -6.01 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.26 -6.29 7.08 56.52 0.40 -5.89 16 16 C 0.10 2.23 4.21 -4.04 -0.02 2.21 16 17 C 0.05 1.08 6.23 37.16 0.23 1.31 16 18 O -0.36 -7.64 10.54 -35.23 -0.37 -8.01 16 19 C 0.03 0.51 11.01 101.05 1.11 1.62 16 20 C -0.05 -0.99 5.89 -27.92 -0.16 -1.16 16 21 C -0.15 -2.33 6.23 -26.37 -0.16 -2.49 16 22 C 0.06 0.88 7.15 37.41 0.27 1.15 16 23 O -0.32 -5.79 10.40 -14.95 -0.16 -5.95 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 2.27 5.57 -51.93 -0.29 1.98 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.08 1.79 3.08 -51.93 -0.16 1.63 16 31 H 0.08 1.71 7.70 -51.93 -0.40 1.31 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.08 7.93 -51.92 -0.41 0.66 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -31.05 335.67 -5.13 -36.18 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.68 Total: 4.48 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 0.57 Total: 1.42 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.56 Total: -34.66 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.44 Total: -29.11 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.21 Total: 16.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.05 -5.13 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.728 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds