Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47172 * 2 1 4 4 C 1.53002 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.43291 * 52.46026 * 4 3 2 6 6 C 1.55238 * 110.58012 * 289.87776 * 4 3 2 7 7 C 1.54894 * 102.58338 * 203.33342 * 6 4 3 8 8 C 1.54266 * 104.31305 * 37.93170 * 7 6 4 9 9 C 1.53869 * 106.60031 * 336.32486 * 8 7 6 10 10 H 1.08999 * 110.04012 * 119.28327 * 9 8 7 11 11 C 1.50705 * 110.03024 * 240.71754 * 9 8 7 12 12 O 1.20825 * 120.00365 * 118.54391 * 11 9 8 13 13 O 1.34234 * 119.99536 * 298.54086 * 11 9 8 14 14 C 1.45201 * 116.99844 * 180.02562 * 13 11 9 15 15 C 1.50694 * 109.47195 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00058 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00155 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00435 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99955 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00454 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47418 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47168 * 119.99930 * 22 20 18 25 25 H 1.48498 * 109.47053 * 240.00008 * 22 20 18 26 26 H 1.08999 * 109.46843 * 299.99971 * 1 2 3 27 27 H 1.08999 * 109.46676 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46843 * 240.00028 * 2 1 3 30 30 H 1.08995 * 109.47041 * 119.99947 * 2 1 3 31 31 H 1.09008 * 109.47218 * 60.00031 * 3 2 1 32 32 H 1.09000 * 109.47715 * 300.00272 * 3 2 1 33 33 H 1.08996 * 110.89448 * 85.04906 * 6 4 3 34 34 H 1.08993 * 110.76342 * 321.56571 * 6 4 3 35 35 H 1.09002 * 110.48891 * 279.18596 * 7 6 4 36 36 H 1.08998 * 110.48494 * 156.67683 * 7 6 4 37 37 H 1.09001 * 110.03084 * 95.60669 * 8 7 6 38 38 H 1.08995 * 110.03255 * 217.03136 * 8 7 6 39 39 H 1.09003 * 109.47160 * 300.00525 * 14 13 11 40 40 H 1.09005 * 109.46923 * 60.00013 * 14 13 11 41 41 H 0.97005 * 120.00145 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9510 0.8200 -0.8091 6 6 4.1152 0.9486 1.3677 7 6 5.5333 1.5702 1.4100 8 6 5.3583 2.9632 0.7708 9 6 4.1101 2.8821 -0.1253 10 1 3.3584 3.5939 0.2159 11 6 4.4826 3.1702 -1.5568 12 8 4.3132 2.3281 -2.4065 13 8 5.0027 4.3626 -1.8879 14 6 5.3375 4.5706 -3.2854 15 6 5.9048 5.9550 -3.4654 16 8 6.0164 6.6936 -2.5098 17 7 6.2890 6.3722 -4.6880 18 6 6.8056 7.6315 -4.8517 19 1 6.9043 8.2895 -4.0009 20 6 7.2013 8.0618 -6.1123 21 7 7.0808 7.2613 -7.1475 22 14 7.9045 9.7779 -6.3353 23 1 7.9342 10.4750 -5.0244 24 1 9.2840 9.6811 -6.8764 25 1 7.0537 10.5421 -7.2826 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 4.1696 -0.1397 1.3942 34 1 3.5033 1.3260 2.1868 35 1 6.2313 0.9683 0.8279 36 1 5.8783 1.6636 2.4397 37 1 5.2125 3.7145 1.5469 38 1 6.2335 3.2112 0.1704 39 1 6.0768 3.8322 -3.5957 40 1 4.4395 4.4635 -3.8940 41 1 6.2001 5.7814 -5.4522 42 1 7.3567 7.5618 -8.0276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837833318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -158.100314 kcal Electronic energy + Delta-G solvation = -22190.846610 eV Core-core repulsion = 18748.604994 eV Total energy + Delta-G solvation = -3442.241616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65060 -38.63250 -37.82541 -35.95821 -34.68815 -33.99033 -31.37872 -30.08790 -29.84429 -28.04209 -25.41764 -24.61309 -22.37196 -21.64490 -20.51136 -19.58017 -19.53281 -18.05581 -17.42435 -16.59638 -16.28485 -15.65504 -15.31420 -15.26509 -14.74706 -14.34840 -13.95809 -13.89168 -13.75745 -13.21917 -13.00142 -12.82246 -12.44994 -12.32518 -11.99133 -11.66635 -11.61079 -11.58126 -11.30557 -11.14923 -11.02591 -10.88760 -10.77500 -10.65598 -10.54539 -10.38730 -10.36675 -10.31039 -10.11846 -9.61074 -8.50756 -8.07677 -6.49553 -3.91445 2.37677 2.77140 3.12030 3.24022 3.31696 3.74816 4.11572 4.21338 4.35536 4.52487 4.78522 4.84407 4.89890 5.01366 5.14522 5.15747 5.18935 5.27976 5.31734 5.38212 5.44272 5.46791 5.57925 5.65431 5.67628 5.70674 5.72144 5.75973 5.87378 5.92266 5.98605 6.07173 6.08682 6.12149 6.16439 6.29939 6.70528 7.48444 7.89155 7.99900 8.49468 9.07858 9.40285 9.90315 10.67851 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.002955 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.099152 B = 9472.507377 C = 9985.045981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.083 4.083 5 H 0.095 0.905 6 C -0.117 4.117 7 C -0.126 4.126 8 C -0.114 4.114 9 C -0.082 4.082 10 H 0.110 0.890 11 C 0.462 3.538 12 O -0.513 6.513 13 O -0.325 6.325 14 C 0.059 3.941 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.554 5.554 18 C -0.301 4.301 19 H 0.106 0.894 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -14.303 13.991 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.101 4.101 5 H 0.113 0.887 6 C -0.155 4.155 7 C -0.164 4.164 8 C -0.152 4.152 9 C -0.101 4.101 10 H 0.128 0.872 11 C 0.305 3.695 12 O -0.402 6.402 13 O -0.239 6.239 14 C -0.018 4.018 15 C 0.224 3.776 16 O -0.460 6.460 17 N -0.191 5.191 18 C -0.430 4.430 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.096 -13.982 14.150 21.477 hybrid contribution 0.280 0.460 -1.023 1.156 sum -7.816 -13.521 13.127 20.402 Atomic orbital electron populations 1.21783 0.96060 1.01417 1.01794 1.21509 0.95615 0.96801 1.02085 1.21658 0.94069 0.97147 1.02115 1.22138 0.95447 0.93671 0.98869 0.88677 1.22632 0.95986 1.00314 0.96539 1.22391 0.97309 0.95826 1.00851 1.22102 0.96444 0.98106 0.98565 1.21763 1.00074 0.99599 0.88655 0.87167 1.23731 0.73810 0.79868 0.92081 1.90623 1.50984 1.47078 1.51550 1.86563 1.72750 1.34975 1.29619 1.22735 1.01289 0.98385 0.79409 1.19335 0.85766 0.87735 0.84783 1.90559 1.59485 1.56289 1.39620 1.41720 1.54873 1.15499 1.07033 1.19775 1.37552 0.90384 0.95332 0.87579 1.25316 0.97543 1.00117 0.94851 1.69623 1.47467 1.36676 1.00051 0.85743 0.78351 0.81271 0.78652 1.19086 1.20618 1.20623 0.92857 0.92734 0.92933 0.91899 0.91984 0.91815 0.91796 0.91166 0.91131 0.91459 0.91198 0.90220 0.90674 0.89671 0.89660 0.77178 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.00 5.81 -26.73 -0.16 -1.16 16 3 C -0.11 -1.03 4.57 -26.73 -0.12 -1.16 16 4 C -0.08 -0.85 2.17 -88.77 -0.19 -1.04 16 5 H 0.09 1.15 6.90 -51.93 -0.36 0.79 16 6 C -0.12 -0.95 5.70 -24.55 -0.14 -1.09 16 7 C -0.13 -1.11 6.82 -25.07 -0.17 -1.28 16 8 C -0.11 -1.24 6.42 -25.62 -0.16 -1.41 16 9 C -0.08 -0.98 2.98 -90.65 -0.27 -1.25 16 10 H 0.11 1.19 7.84 -51.93 -0.41 0.79 16 11 C 0.46 7.44 7.02 36.01 0.25 7.69 16 12 O -0.51 -9.07 15.17 -18.75 -0.28 -9.35 16 13 O -0.32 -6.19 9.68 -45.91 -0.44 -6.64 16 14 C 0.06 1.16 5.94 36.00 0.21 1.38 16 15 C 0.44 10.75 7.86 -10.99 -0.09 10.67 16 16 O -0.58 -16.18 16.08 -14.11 -0.23 -16.41 16 17 N -0.55 -14.18 5.29 -10.97 -0.06 -14.24 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 31 H 0.06 0.52 8.03 -51.92 -0.42 0.10 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.07 0.50 7.98 -51.93 -0.41 0.09 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 39 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 40 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 41 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -31.74 349.30 -7.62 -39.36 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.86 Total: 7.14 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.71 Total: 2.61 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.67 Total: -37.76 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.96 Total: -32.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.74 -7.62 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837833318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.741 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds