Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47172 * 2 1 4 4 C 1.53002 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.43291 * 52.46026 * 4 3 2 6 6 C 1.55238 * 110.58012 * 289.87776 * 4 3 2 7 7 C 1.54894 * 102.58338 * 203.33342 * 6 4 3 8 8 C 1.54266 * 104.31305 * 37.93170 * 7 6 4 9 9 C 1.53869 * 106.60031 * 336.32486 * 8 7 6 10 10 H 1.08999 * 110.04012 * 119.28327 * 9 8 7 11 11 C 1.50705 * 110.03024 * 240.71754 * 9 8 7 12 12 O 1.20825 * 120.00365 * 118.54391 * 11 9 8 13 13 O 1.34234 * 119.99536 * 298.54086 * 11 9 8 14 14 C 1.45201 * 116.99844 * 180.02562 * 13 11 9 15 15 C 1.50694 * 109.47195 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00058 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00155 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00435 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99955 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00454 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99974 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47418 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47168 * 119.99930 * 22 20 18 25 25 H 1.48498 * 109.47053 * 240.00008 * 22 20 18 26 26 H 1.08999 * 109.46843 * 299.99971 * 1 2 3 27 27 H 1.08999 * 109.46676 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46843 * 240.00028 * 2 1 3 30 30 H 1.08995 * 109.47041 * 119.99947 * 2 1 3 31 31 H 1.09008 * 109.47218 * 60.00031 * 3 2 1 32 32 H 1.09000 * 109.47715 * 300.00272 * 3 2 1 33 33 H 1.08996 * 110.89448 * 85.04906 * 6 4 3 34 34 H 1.08993 * 110.76342 * 321.56571 * 6 4 3 35 35 H 1.09002 * 110.48891 * 279.18596 * 7 6 4 36 36 H 1.08998 * 110.48494 * 156.67683 * 7 6 4 37 37 H 1.09001 * 110.03084 * 95.60669 * 8 7 6 38 38 H 1.08995 * 110.03255 * 217.03136 * 8 7 6 39 39 H 1.09003 * 109.47160 * 300.00525 * 14 13 11 40 40 H 1.09005 * 109.46923 * 60.00013 * 14 13 11 41 41 H 0.97005 * 120.00145 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9510 0.8200 -0.8091 6 6 4.1152 0.9486 1.3677 7 6 5.5333 1.5702 1.4100 8 6 5.3583 2.9632 0.7708 9 6 4.1101 2.8821 -0.1253 10 1 3.3584 3.5939 0.2159 11 6 4.4826 3.1702 -1.5568 12 8 4.3132 2.3281 -2.4065 13 8 5.0027 4.3626 -1.8879 14 6 5.3375 4.5706 -3.2854 15 6 5.9048 5.9550 -3.4654 16 8 6.0164 6.6936 -2.5098 17 7 6.2890 6.3722 -4.6880 18 6 6.8056 7.6315 -4.8517 19 1 6.9043 8.2895 -4.0009 20 6 7.2013 8.0618 -6.1123 21 7 7.0808 7.2613 -7.1475 22 14 7.9045 9.7779 -6.3353 23 1 7.9342 10.4750 -5.0244 24 1 9.2840 9.6811 -6.8764 25 1 7.0537 10.5421 -7.2826 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9564 -0.8899 33 1 4.1696 -0.1397 1.3942 34 1 3.5033 1.3260 2.1868 35 1 6.2313 0.9683 0.8279 36 1 5.8783 1.6636 2.4397 37 1 5.2125 3.7145 1.5469 38 1 6.2335 3.2112 0.1704 39 1 6.0768 3.8322 -3.5957 40 1 4.4395 4.4635 -3.8940 41 1 6.2001 5.7814 -5.4522 42 1 7.3567 7.5618 -8.0276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837833318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = -175.759303 kcal Electronic energy + Delta-G solvation = -22191.612361 eV Core-core repulsion = 18748.604994 eV Total energy + Delta-G solvation = -3443.007367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93714 -40.23587 -39.15422 -37.40128 -36.06201 -35.37888 -33.44779 -31.12296 -30.63575 -29.55127 -26.65954 -26.08021 -23.48954 -22.37411 -21.49336 -21.30843 -20.56988 -20.09984 -18.71787 -18.03540 -17.73975 -17.31672 -16.59835 -16.27409 -15.99835 -15.85420 -15.51860 -15.29845 -14.62518 -14.52419 -14.00429 -13.90576 -13.65557 -13.59376 -13.50812 -13.14978 -12.96077 -12.52881 -12.49091 -12.30367 -12.11949 -12.03893 -11.88550 -11.81549 -11.68221 -11.60950 -11.54905 -11.40630 -11.28154 -11.21349 -10.54276 -10.14594 -8.54769 -6.05645 1.08236 1.33009 1.35773 1.44721 1.58388 1.83555 2.28382 3.00410 3.10509 3.37404 3.55250 3.64676 3.91842 4.08925 4.10107 4.12810 4.18080 4.22216 4.34656 4.43034 4.49900 4.58020 4.59776 4.72497 4.77784 4.95974 5.00556 5.05775 5.08173 5.19595 5.23158 5.24234 5.33072 5.33763 5.35521 5.46104 5.48396 5.58107 5.86470 6.42865 6.62907 7.00282 7.36599 7.89967 8.62618 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.002955 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.099152 B = 9472.507377 C = 9985.045981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.080 4.080 5 H 0.073 0.927 6 C -0.108 4.108 7 C -0.123 4.123 8 C -0.116 4.116 9 C -0.081 4.081 10 H 0.125 0.875 11 C 0.460 3.540 12 O -0.531 6.531 13 O -0.343 6.343 14 C 0.070 3.930 15 C 0.437 3.563 16 O -0.617 6.617 17 N -0.558 5.558 18 C -0.338 4.338 19 H 0.084 0.916 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.999 3.001 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.400 0.600 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 -14.918 15.054 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.148 4.148 4 C -0.099 4.099 5 H 0.091 0.909 6 C -0.145 4.145 7 C -0.160 4.160 8 C -0.154 4.154 9 C -0.100 4.100 10 H 0.142 0.858 11 C 0.305 3.695 12 O -0.421 6.421 13 O -0.259 6.259 14 C -0.008 4.008 15 C 0.223 3.777 16 O -0.504 6.504 17 N -0.195 5.195 18 C -0.467 4.467 19 H 0.102 0.898 20 C -0.210 4.210 21 N -0.556 5.556 22 Si 0.822 3.178 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.234 0.766 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.516 -14.634 15.194 22.749 hybrid contribution 0.394 0.609 -1.370 1.550 sum -8.122 -14.025 13.824 21.301 Atomic orbital electron populations 1.21783 0.95520 1.01959 1.01773 1.21494 0.96078 0.96009 1.02223 1.21650 0.93273 0.97902 1.01947 1.22127 0.96089 0.91979 0.99657 0.90907 1.22625 0.95361 1.01100 0.95398 1.22395 0.97833 0.94197 1.01607 1.22154 0.94794 1.00063 0.98391 1.22026 1.01014 1.01141 0.85812 0.85756 1.24618 0.72722 0.78560 0.93614 1.90609 1.51722 1.47267 1.52497 1.86578 1.73482 1.36834 1.28976 1.22498 1.02252 0.95360 0.80656 1.20072 0.84613 0.89183 0.83784 1.90520 1.61002 1.58064 1.40769 1.41758 1.54918 1.15174 1.07675 1.19764 1.40010 0.91422 0.95479 0.89762 1.26158 0.96989 1.03867 0.94003 1.69680 1.47164 1.38199 1.00534 0.84781 0.78128 0.76452 0.78429 1.19520 1.19366 1.19377 0.91981 0.93668 0.92143 0.93139 0.90459 0.90132 0.93796 0.89847 0.89294 0.92156 0.89202 0.88868 0.93086 0.87934 0.87867 0.76607 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.77 5.81 30.59 0.18 -1.59 16 3 C -0.11 -1.87 4.57 30.59 0.14 -1.73 16 4 C -0.08 -1.53 2.17 -9.60 -0.02 -1.55 16 5 H 0.07 1.74 6.90 -2.38 -0.02 1.72 16 6 C -0.11 -1.43 5.70 32.01 0.18 -1.25 16 7 C -0.12 -1.89 6.82 31.67 0.22 -1.68 16 8 C -0.12 -2.41 6.42 31.32 0.20 -2.20 16 9 C -0.08 -1.86 2.98 -10.82 -0.03 -1.90 16 10 H 0.12 2.52 7.84 -2.39 -0.02 2.50 16 11 C 0.46 14.86 7.02 71.24 0.50 15.36 16 12 O -0.53 -18.87 15.17 21.97 0.33 -18.54 16 13 O -0.34 -13.25 9.68 -45.10 -0.44 -13.69 16 14 C 0.07 2.75 5.94 71.23 0.42 3.17 16 15 C 0.44 21.91 7.86 87.66 0.69 22.60 16 16 O -0.62 -35.78 16.08 15.74 0.25 -35.53 16 17 N -0.56 -29.20 5.29 -306.99 -1.62 -30.82 16 18 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 19 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 20 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 21 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 22 Si 1.00 42.30 29.55 68.60 2.03 44.32 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.91 7.56 -2.39 -0.02 0.89 16 31 H 0.08 1.09 8.03 -2.38 -0.02 1.08 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 34 H 0.09 0.91 7.98 -2.39 -0.02 0.89 16 35 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.30 7.63 -2.39 -0.02 1.28 16 39 H 0.10 3.68 8.13 -2.39 -0.02 3.66 16 40 H 0.10 3.69 8.13 -2.38 -0.02 3.67 16 41 H 0.40 19.74 7.90 -92.70 -0.73 19.00 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -68.92 349.30 5.58 -63.33 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.27 Total: 30.20 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 4.47 Total: 9.50 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.34 Total: -79.60 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: 0.15 Total: -67.76 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.92 5.58 -63.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837833318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.425 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds