Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47190 * 2 1 4 4 C 1.53001 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.43312 * 303.91353 * 4 3 2 6 6 C 1.54266 * 110.48561 * 66.45060 * 4 3 2 7 7 C 1.53872 * 106.60044 * 142.28833 * 6 4 3 8 8 C 1.54266 * 106.59640 * 359.97438 * 7 6 4 9 9 C 1.54887 * 104.19888 * 336.38805 * 8 7 6 10 10 H 1.09000 * 110.75698 * 279.63123 * 9 8 7 11 11 C 1.50697 * 110.75601 * 156.25414 * 9 8 7 12 12 O 1.20827 * 119.99931 * 241.45634 * 11 9 8 13 13 O 1.34229 * 119.99899 * 61.46173 * 11 9 8 14 14 C 1.45202 * 116.99661 * 179.97438 * 13 11 9 15 15 C 1.50707 * 109.46899 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00266 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00191 * 179.97438 * 17 15 14 19 19 H 1.07990 * 120.00157 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00228 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46822 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47187 * 119.99833 * 22 20 18 25 25 H 1.48493 * 109.47445 * 240.00161 * 22 20 18 26 26 H 1.08996 * 109.47462 * 60.00468 * 1 2 3 27 27 H 1.09006 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47625 * 300.00080 * 1 2 3 29 29 H 1.09002 * 109.47754 * 239.99384 * 2 1 3 30 30 H 1.09006 * 109.47393 * 119.99704 * 2 1 3 31 31 H 1.08997 * 109.47580 * 59.99467 * 3 2 1 32 32 H 1.09004 * 109.46954 * 299.99633 * 3 2 1 33 33 H 1.09002 * 110.02957 * 23.00444 * 6 4 3 34 34 H 1.09000 * 110.07144 * 261.59817 * 6 4 3 35 35 H 1.09003 * 110.03622 * 240.71485 * 7 6 4 36 36 H 1.09005 * 110.03465 * 119.28158 * 7 6 4 37 37 H 1.09001 * 110.48620 * 95.07012 * 8 7 6 38 38 H 1.09004 * 110.48798 * 217.70845 * 8 7 6 39 39 H 1.08993 * 109.46964 * 299.99120 * 14 13 11 40 40 H 1.08994 * 109.47707 * 60.00162 * 14 13 11 41 41 H 0.97007 * 120.00119 * 359.97438 * 17 15 14 42 42 H 0.96996 * 120.00251 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9501 0.8728 0.8485 6 6 4.1104 0.8650 -1.3238 7 6 5.3571 1.6904 -1.6870 8 6 5.5304 2.7412 -0.5709 9 6 4.1114 2.8937 0.0309 10 1 3.4977 3.5484 -0.5878 11 6 4.1838 3.4069 1.4460 12 8 3.7531 2.7368 2.3544 13 8 4.7267 4.6086 1.6971 14 6 4.7624 5.0390 3.0834 15 6 5.4025 6.4007 3.1702 16 8 5.7907 6.9536 2.1629 17 7 5.5435 7.0039 4.3671 18 6 6.1262 8.2424 4.4461 19 1 6.4726 8.7343 3.5494 20 6 6.2710 8.8645 5.6801 21 7 5.8499 8.2657 6.7714 22 14 7.0657 10.5517 5.7879 23 1 7.4510 11.0052 4.4274 24 1 6.1018 11.5162 6.3761 25 1 8.2753 10.4752 6.6458 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.3584 0.9602 -2.1071 34 1 4.3815 -0.1825 -1.1921 35 1 5.2102 2.1862 -2.6466 36 1 6.2335 1.0437 -1.7307 37 1 6.2291 2.3830 0.1851 38 1 5.8715 3.6886 -0.9885 39 1 3.7463 5.0893 3.4745 40 1 5.3429 4.3271 3.6701 41 1 5.2326 6.5619 5.1727 42 1 5.9507 8.7002 7.6327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837833320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -158.316432 kcal Electronic energy + Delta-G solvation = -22186.076729 eV Core-core repulsion = 18743.825742 eV Total energy + Delta-G solvation = -3442.250987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60057 -38.65947 -37.85129 -35.95259 -34.67450 -33.98663 -31.37533 -30.08750 -29.82818 -28.05287 -25.39880 -24.61362 -22.44131 -21.75179 -20.14543 -19.68830 -19.53576 -18.05072 -17.60131 -16.50365 -16.26140 -15.75788 -15.38322 -15.10897 -14.64819 -14.28919 -14.05350 -13.94069 -13.70177 -13.16474 -13.01340 -12.76792 -12.48430 -12.36916 -12.02905 -11.76158 -11.62243 -11.56704 -11.34018 -11.14662 -11.09646 -10.87694 -10.60132 -10.58060 -10.56668 -10.38623 -10.34638 -10.31388 -10.15923 -9.60829 -8.50394 -8.07402 -6.49310 -3.91254 2.37728 2.78519 3.12184 3.24162 3.31831 3.75166 4.11490 4.20787 4.35756 4.50398 4.80130 4.85458 4.90413 5.01093 5.15652 5.17449 5.20613 5.23473 5.30328 5.32666 5.43208 5.48564 5.58951 5.66406 5.68799 5.71133 5.72612 5.77205 5.90014 5.91165 5.99990 6.06505 6.07920 6.13974 6.21512 6.27643 6.70691 7.48675 7.89678 8.00486 8.49730 9.08095 9.40571 9.90598 10.68080 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.002981 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.692239 B = 9389.764486 C =10035.790506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.119 4.119 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.084 4.084 10 H 0.114 0.886 11 C 0.464 3.536 12 O -0.513 6.513 13 O -0.324 6.324 14 C 0.059 3.941 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.554 5.554 18 C -0.301 4.301 19 H 0.106 0.894 20 C 0.024 3.976 21 N -0.898 5.898 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 -15.978 -13.062 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.093 4.093 5 H 0.106 0.894 6 C -0.157 4.157 7 C -0.161 4.161 8 C -0.150 4.150 9 C -0.103 4.103 10 H 0.132 0.868 11 C 0.307 3.693 12 O -0.402 6.402 13 O -0.239 6.239 14 C -0.018 4.018 15 C 0.224 3.776 16 O -0.460 6.460 17 N -0.191 5.191 18 C -0.430 4.430 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.063 -15.709 -13.251 21.427 hybrid contribution 0.097 0.554 0.972 1.123 sum -5.965 -15.155 -12.278 20.397 Atomic orbital electron populations 1.21779 0.96069 1.01373 1.01832 1.21505 0.95642 0.96844 1.01966 1.21671 0.94028 0.97106 1.02320 1.21956 0.95630 0.93054 0.98706 0.89401 1.22232 0.97262 0.99485 0.96685 1.22138 0.98158 0.97317 0.98535 1.22328 0.94264 1.00392 0.98063 1.22102 1.00152 0.97889 0.90130 0.86818 1.23636 0.74025 0.79378 0.92263 1.90635 1.44767 1.57656 1.47098 1.86568 1.72644 1.34285 1.30384 1.22730 1.02382 0.96854 0.79850 1.19341 0.86348 0.86823 0.85098 1.90559 1.54007 1.66318 1.35080 1.41719 1.53156 1.17754 1.06504 1.19772 1.35278 0.93020 0.94963 0.87579 1.25315 0.97587 1.00241 0.94679 1.69623 1.46505 1.39092 0.98608 0.85745 0.78566 0.81054 0.78663 1.19088 1.20625 1.20622 0.92876 0.92968 0.92692 0.92059 0.91970 0.91382 0.91950 0.91368 0.91500 0.91382 0.91456 0.91019 0.89842 0.89668 0.89677 0.77177 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -1.02 5.78 -26.74 -0.15 -1.17 16 3 C -0.11 -1.09 4.58 -26.73 -0.12 -1.22 16 4 C -0.07 -0.76 1.93 -88.94 -0.17 -0.93 16 5 H 0.09 1.02 7.54 -51.93 -0.39 0.63 16 6 C -0.12 -0.95 5.50 -25.61 -0.14 -1.09 16 7 C -0.12 -1.02 6.80 -25.61 -0.17 -1.19 16 8 C -0.11 -1.21 6.25 -25.07 -0.16 -1.37 16 9 C -0.08 -0.99 2.83 -89.77 -0.25 -1.25 16 10 H 0.11 1.22 8.06 -51.93 -0.42 0.80 16 11 C 0.46 7.42 7.25 36.00 0.26 7.68 16 12 O -0.51 -8.98 15.27 -18.75 -0.29 -9.26 16 13 O -0.32 -6.16 9.74 -45.90 -0.45 -6.61 16 14 C 0.06 1.16 5.94 36.01 0.21 1.38 16 15 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 16 O -0.58 -16.17 16.08 -14.11 -0.23 -16.39 16 17 N -0.55 -14.17 5.29 -10.97 -0.06 -14.23 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 7.49 -51.93 -0.39 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 32 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 40 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.65 349.72 -7.61 -39.26 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.91 Total: 7.00 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.66 Total: 2.70 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.67 Total: -37.74 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.96 Total: -32.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.65 -7.61 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837833320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.057 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds