Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46870 * 2 1 4 4 C 1.53000 * 109.46870 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.01838 * 306.67991 * 4 3 2 6 6 C 1.54266 * 110.03499 * 68.12067 * 4 3 2 7 7 C 1.54890 * 104.19882 * 142.89526 * 6 4 3 8 8 C 1.54895 * 102.74691 * 322.05649 * 7 6 4 9 9 C 1.53872 * 110.03432 * 185.28820 * 4 3 2 10 10 H 1.09000 * 110.03812 * 121.37945 * 9 4 3 11 11 C 1.50708 * 110.03119 * 0.02562 * 9 4 3 12 12 O 1.20826 * 119.99912 * 273.48794 * 11 9 4 13 13 O 1.34221 * 120.00100 * 93.76386 * 11 9 4 14 14 C 1.45201 * 117.00321 * 179.72853 * 13 11 9 15 15 C 1.50695 * 109.47282 * 179.97438 * 14 13 11 16 16 O 1.21289 * 120.00004 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00085 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00537 * 180.02562 * 17 15 14 19 19 H 1.08009 * 119.99630 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00269 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99658 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99963 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47101 * 89.99900 * 22 20 18 24 24 H 1.48497 * 109.47081 * 210.00120 * 22 20 18 25 25 H 1.48502 * 109.47220 * 330.00009 * 22 20 18 26 26 H 1.09002 * 109.47208 * 300.00062 * 1 2 3 27 27 H 1.08996 * 109.47051 * 60.00190 * 1 2 3 28 28 H 1.08993 * 109.46956 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47208 * 239.99938 * 2 1 3 30 30 H 1.08996 * 109.47051 * 119.99810 * 2 1 3 31 31 H 1.08995 * 109.47516 * 59.99684 * 3 2 1 32 32 H 1.09005 * 109.47094 * 299.99504 * 3 2 1 33 33 H 1.09004 * 110.48804 * 261.57523 * 6 4 3 34 34 H 1.09009 * 110.48467 * 24.08309 * 6 4 3 35 35 H 1.08997 * 110.75926 * 80.37458 * 7 6 4 36 36 H 1.09004 * 110.75850 * 203.56365 * 7 6 4 37 37 H 1.08997 * 110.48791 * 279.26787 * 8 7 6 38 38 H 1.08997 * 110.48546 * 156.61872 * 8 7 6 39 39 H 1.09004 * 109.46726 * 300.00058 * 14 13 11 40 40 H 1.09000 * 109.47183 * 59.99207 * 14 13 11 41 41 H 0.96999 * 119.99678 * 359.97438 * 17 15 14 42 42 H 0.96997 * 119.99774 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9434 0.8307 0.8204 6 6 4.0979 0.9027 -1.3459 7 6 5.3530 1.7632 -1.6343 8 6 4.9270 3.1667 -1.1364 9 6 4.0971 2.8820 0.1326 10 1 4.7264 2.9688 1.0184 11 6 2.9438 3.8479 0.2232 12 8 2.4396 4.2831 -0.7849 13 8 2.4803 4.2289 1.4239 14 6 1.3713 5.1660 1.4354 15 6 0.9895 5.4751 2.8600 16 8 1.5924 4.9563 3.7756 17 7 -0.0219 6.3282 3.1167 18 6 -0.3689 6.6098 4.4127 19 1 0.1679 6.1478 5.2281 20 6 -1.4113 7.4897 4.6773 21 7 -1.7442 7.7592 5.9197 22 14 -2.3393 8.2893 3.2672 23 1 -3.4898 7.4327 2.8829 24 1 -2.8354 9.6224 3.6938 25 1 -1.4304 8.4486 2.1036 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 4.3692 -0.1491 -1.2548 34 1 3.3524 1.0369 -2.1298 35 1 6.2106 1.3970 -1.0700 36 1 5.5733 1.7795 -2.7018 37 1 4.3163 3.6686 -1.8869 38 1 5.8033 3.7671 -0.8924 39 1 1.6675 6.0856 0.9305 40 1 0.5185 4.7262 0.9182 41 1 -0.5038 6.7434 2.3844 42 1 -2.4716 8.3737 6.1045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837833321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = -148.569960 kcal Electronic energy + Delta-G solvation = -22776.989216 eV Core-core repulsion = 19335.160867 eV Total energy + Delta-G solvation = -3441.828349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90487 -38.74594 -37.91183 -36.04687 -34.57261 -34.04834 -31.79272 -30.33927 -29.65495 -28.30601 -25.35349 -24.50347 -22.36595 -21.87136 -20.68719 -19.63718 -19.29113 -18.55650 -17.48698 -16.52633 -16.30767 -15.90244 -15.53368 -15.10714 -14.99103 -14.47300 -14.17836 -13.79635 -13.55107 -13.16679 -12.92794 -12.76012 -12.34530 -12.33377 -12.16543 -12.10461 -11.91497 -11.51275 -11.30883 -11.25777 -11.05437 -10.93606 -10.87038 -10.64900 -10.62784 -10.61335 -10.37973 -10.19336 -10.03916 -9.66733 -8.64894 -8.28374 -6.38592 -3.91332 2.29844 2.69126 2.99229 3.03795 3.12388 3.57038 4.04328 4.19006 4.29653 4.38086 4.58477 4.85753 4.92093 5.03759 5.08319 5.11981 5.21621 5.25323 5.31148 5.33617 5.38645 5.41168 5.49382 5.56712 5.63691 5.69462 5.72856 5.73616 5.74446 5.88290 5.93124 5.97666 6.08484 6.12953 6.21428 6.26056 6.60010 7.45953 7.88359 8.02198 8.49002 8.84603 9.30859 9.67043 10.73790 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.003787 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.094171 B = 7392.025394 C = 7864.056961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.076 4.076 5 H 0.087 0.913 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.116 4.116 9 C -0.085 4.085 10 H 0.106 0.894 11 C 0.470 3.530 12 O -0.515 6.515 13 O -0.325 6.325 14 C 0.057 3.943 15 C 0.448 3.552 16 O -0.556 6.556 17 N -0.580 5.580 18 C -0.308 4.308 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 -12.394 -16.923 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.171 4.171 4 C -0.095 4.095 5 H 0.105 0.895 6 C -0.155 4.155 7 C -0.160 4.160 8 C -0.154 4.154 9 C -0.104 4.104 10 H 0.124 0.876 11 C 0.314 3.686 12 O -0.404 6.404 13 O -0.239 6.239 14 C -0.021 4.021 15 C 0.233 3.767 16 O -0.438 6.438 17 N -0.220 5.220 18 C -0.436 4.436 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.515 5.515 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.194 1.194 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.515 -12.477 -16.399 22.696 hybrid contribution -1.048 0.974 -0.982 1.736 sum 8.467 -11.502 -17.381 22.496 Atomic orbital electron populations 1.21787 0.95851 1.01457 1.02152 1.21475 0.95959 0.96265 1.01853 1.22028 0.94133 0.97913 1.03042 1.21743 0.95891 0.92845 0.98999 0.89465 1.22473 0.97336 0.99216 0.96514 1.22473 0.97772 0.94592 1.01128 1.22449 0.99148 0.98069 0.95714 1.21805 0.93530 0.93228 1.01852 0.87575 1.23576 0.83887 0.79721 0.81443 1.90615 1.58433 1.54318 1.37067 1.86600 1.47477 1.57659 1.32171 1.22724 0.88409 0.92710 0.98282 1.19212 0.84131 0.84584 0.88767 1.90602 1.54014 1.53467 1.45723 1.42040 1.30661 1.40818 1.08526 1.19428 1.16086 1.25507 0.82595 0.86022 1.25032 0.97054 0.97128 0.96663 1.69616 1.29130 1.34940 1.17793 0.86683 0.80744 0.80213 0.81900 1.19408 1.19940 1.19370 0.92419 0.92853 0.92840 0.92038 0.91920 0.91105 0.91104 0.91257 0.91096 0.91201 0.91123 0.89536 0.90888 0.89558 0.89608 0.79424 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.15 5.79 -26.73 -0.15 -1.31 16 3 C -0.13 -1.56 3.40 -26.73 -0.09 -1.65 16 4 C -0.08 -0.77 2.93 -89.50 -0.26 -1.03 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.12 -0.96 5.55 -25.07 -0.14 -1.10 16 7 C -0.12 -0.93 6.91 -24.74 -0.17 -1.10 16 8 C -0.12 -1.12 6.31 -25.07 -0.16 -1.28 16 9 C -0.08 -0.97 3.40 -90.65 -0.31 -1.28 16 10 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 11 C 0.47 7.16 4.76 36.01 0.17 7.34 16 12 O -0.52 -8.52 14.79 -18.75 -0.28 -8.80 16 13 O -0.32 -5.89 9.30 -45.88 -0.43 -6.32 16 14 C 0.06 1.03 5.94 36.00 0.21 1.25 16 15 C 0.45 10.49 7.86 -10.99 -0.09 10.41 16 16 O -0.56 -15.40 16.08 -14.11 -0.23 -15.63 16 17 N -0.58 -13.90 5.09 -10.96 -0.06 -13.96 16 18 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 19 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 20 C 0.05 1.22 5.50 -17.46 -0.10 1.13 16 21 N -0.88 -25.25 13.96 55.50 0.77 -24.48 16 22 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.00 6.87 -51.93 -0.36 0.64 16 32 H 0.07 0.90 7.13 -51.93 -0.37 0.53 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.62 7.75 -51.92 -0.40 0.21 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.97 6.89 -51.93 -0.36 0.61 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.42 8.13 -51.93 -0.42 0.99 16 40 H 0.09 1.40 8.13 -51.93 -0.42 0.97 16 41 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -32.63 341.41 -7.39 -40.01 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.74 Total: 8.22 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.86 Total: 1.36 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.72 Total: -38.43 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.93 Total: -30.74 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.63 -7.39 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837833321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.556 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds