Wall clock time and date at job start Tue Mar 31 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47700 * 2 1 4 4 H 1.09005 * 110.01343 * 304.14511 * 3 2 1 5 5 C 1.54264 * 110.03135 * 65.52832 * 3 2 1 6 6 C 1.54892 * 104.19575 * 142.89756 * 5 3 2 7 7 C 1.54890 * 102.74950 * 322.05975 * 6 5 3 8 8 C 1.53869 * 110.03786 * 182.69847 * 3 2 1 9 9 H 1.09002 * 110.02914 * 121.42573 * 8 3 2 10 10 C 1.50704 * 110.03006 * 359.97438 * 8 3 2 11 11 O 1.20823 * 119.99824 * 273.06504 * 10 8 3 12 12 O 1.34235 * 119.99735 * 93.06894 * 10 8 3 13 13 C 1.45194 * 116.99607 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47066 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00049 * 359.97438 * 14 13 12 16 16 N 1.34783 * 120.00173 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00053 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46938 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99700 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00343 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99926 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47195 * 90.00240 * 22 20 18 24 24 H 1.48502 * 109.47084 * 210.00086 * 22 20 18 25 25 H 1.48502 * 109.47235 * 330.00200 * 22 20 18 26 26 H 1.08999 * 109.47333 * 59.99625 * 1 2 3 27 27 H 1.09003 * 109.46669 * 300.00023 * 1 2 3 28 28 H 1.08992 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47333 * 120.00375 * 2 1 3 30 30 H 1.09009 * 109.47086 * 239.99963 * 2 1 3 31 31 H 1.09002 * 110.48749 * 261.57740 * 5 3 2 32 32 H 1.09001 * 110.48475 * 24.08811 * 5 3 2 33 33 H 1.09005 * 110.75453 * 80.37456 * 6 5 3 34 34 H 1.08993 * 110.75592 * 203.56016 * 6 5 3 35 35 H 1.08999 * 110.48734 * 156.61792 * 7 6 5 36 36 H 1.09002 * 110.48757 * 279.13360 * 7 6 5 37 37 H 1.09006 * 109.47388 * 299.99573 * 13 12 10 38 38 H 1.09003 * 109.47739 * 59.99819 * 13 12 10 39 39 H 0.96998 * 119.99528 * 359.97438 * 16 14 13 40 40 H 1.08999 * 109.47192 * 299.99939 * 17 16 14 41 41 H 1.09003 * 109.46955 * 59.99308 * 17 16 14 42 42 H 0.96996 * 120.00132 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6225 1.9858 -0.8477 5 6 1.6503 2.1408 1.3191 6 6 2.8669 3.0420 1.6458 7 6 4.0679 2.1653 1.2121 8 6 3.5772 1.4580 -0.0681 9 1 3.9063 2.0094 -0.9489 10 6 4.1062 0.0476 -0.1131 11 8 4.3123 -0.5534 0.9146 12 8 4.3485 -0.5409 -1.2950 13 6 4.8565 -1.9006 -1.2624 14 6 5.0674 -2.3920 -2.6713 15 8 4.8140 -1.6677 -3.6105 16 7 5.5367 -3.6369 -2.8878 17 6 5.7411 -4.1147 -4.2574 18 6 6.2685 -5.5260 -4.2236 19 1 6.4351 -6.0176 -3.2765 20 6 6.5383 -6.1895 -5.4017 21 7 6.3359 -5.5907 -6.5550 22 14 7.1914 -7.9392 -5.3598 23 1 6.0531 -8.8928 -5.3730 24 1 8.0493 -8.1759 -6.5485 25 1 7.9908 -8.1397 -4.1245 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 0.7540 2.7454 1.1803 32 1 1.4948 1.4054 2.1086 33 1 2.8319 3.9637 1.0650 34 1 2.9101 3.2608 2.7127 35 1 4.9360 2.7877 0.9952 36 1 4.3066 1.4355 1.9858 37 1 5.8047 -1.9215 -0.7250 38 1 4.1378 -2.5451 -0.7562 39 1 5.7389 -4.2163 -2.1366 40 1 4.7932 -4.0935 -4.7950 41 1 6.4602 -3.4704 -4.7635 42 1 6.5260 -6.0574 -7.3838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837847964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:21 Heat of formation + Delta-G solvation = -152.776044 kcal Electronic energy + Delta-G solvation = -22318.226840 eV Core-core repulsion = 18876.216102 eV Total energy + Delta-G solvation = -3442.010738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05519 -39.02869 -38.10509 -36.20450 -34.25026 -33.39982 -32.41656 -30.32584 -28.86267 -27.86373 -26.62289 -23.39319 -22.83201 -22.15625 -20.85240 -19.94348 -19.43245 -17.62921 -17.43070 -16.74212 -16.26946 -15.98408 -15.48343 -15.15554 -14.75063 -14.62524 -14.53701 -14.05272 -13.53831 -13.17479 -13.09042 -12.66694 -12.54513 -12.27854 -12.00033 -11.91455 -11.76878 -11.54250 -11.34062 -11.16746 -11.02631 -10.95784 -10.93161 -10.85149 -10.78276 -10.55124 -10.35556 -10.32485 -9.44904 -9.17487 -8.78928 -7.99327 -6.20357 -4.27833 2.14489 2.46347 3.17793 3.22569 3.28813 3.31215 3.94521 4.15882 4.21169 4.32060 4.44690 4.80637 4.90945 4.94388 5.05133 5.13500 5.15747 5.19792 5.21171 5.24084 5.29821 5.34599 5.35995 5.41067 5.54395 5.59617 5.73908 5.79235 5.86406 5.90910 6.03848 6.05196 6.13255 6.40033 7.21990 7.30542 7.45048 7.59002 7.73061 7.91238 8.49547 8.70566 8.96050 9.38623 10.89802 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035245 B = 0.002850 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.259418 B = 9820.644910 C =10025.945246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C -0.076 4.076 4 H 0.087 0.913 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.085 4.085 9 H 0.107 0.893 10 C 0.473 3.527 11 O -0.512 6.512 12 O -0.329 6.329 13 C 0.047 3.953 14 C 0.499 3.501 15 O -0.534 6.534 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 14.907 16.846 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C -0.095 4.095 4 H 0.106 0.894 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.104 4.104 9 H 0.125 0.875 10 C 0.316 3.684 11 O -0.400 6.400 12 O -0.244 6.244 13 C -0.030 4.030 14 C 0.282 3.718 15 O -0.411 6.411 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.509 15.175 16.205 23.776 hybrid contribution 0.579 -1.480 0.269 1.612 sum -7.930 13.695 16.473 22.843 Atomic orbital electron populations 1.21722 0.95071 1.01867 1.01782 1.21927 0.97052 0.95744 1.02897 1.21761 0.91229 0.97153 0.99362 0.89416 1.22472 0.97988 0.98491 0.96621 1.22476 0.94194 0.97993 1.01334 1.22454 0.98341 0.98887 0.95724 1.21821 0.97038 0.89540 1.02018 0.87510 1.23603 0.73740 0.89632 0.81442 1.90631 1.49086 1.65346 1.34972 1.86608 1.75473 1.28906 1.33363 1.22850 1.01182 0.81322 0.97688 1.19905 0.79359 0.83213 0.89304 1.90707 1.50865 1.55598 1.43961 1.46369 1.64134 1.12956 1.12251 1.19172 0.97345 0.94209 0.76169 1.21208 1.45737 0.98188 0.93211 0.91773 1.24954 0.95204 0.98720 0.95111 1.69974 1.47183 1.37530 0.97521 0.86391 0.78875 0.83723 0.77785 1.20421 1.20961 1.19711 0.92551 0.92612 0.92630 0.91128 0.91224 0.91191 0.91058 0.91163 0.91044 0.90842 0.89490 0.88621 0.88668 0.77451 0.95271 0.95266 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.74 37.15 0.36 -0.93 16 2 C -0.14 -1.47 4.11 -26.73 -0.11 -1.58 16 3 C -0.08 -0.69 2.95 -89.51 -0.26 -0.96 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -0.87 5.42 -25.07 -0.14 -1.01 16 6 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 7 C -0.12 -1.01 6.31 -25.07 -0.16 -1.17 16 8 C -0.08 -0.87 3.40 -90.65 -0.31 -1.18 16 9 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 10 C 0.47 6.44 4.79 36.01 0.17 6.61 16 11 O -0.51 -7.67 14.72 -18.75 -0.28 -7.95 16 12 O -0.33 -5.26 9.31 -45.92 -0.43 -5.69 16 13 C 0.05 0.73 5.94 36.01 0.21 0.95 16 14 C 0.50 10.10 7.91 -10.98 -0.09 10.01 16 15 O -0.53 -13.13 16.50 -14.11 -0.23 -13.36 16 16 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 17 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 18 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 22 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 7.43 -51.93 -0.39 0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.82 7.04 -51.93 -0.37 0.46 16 30 H 0.07 0.88 7.02 -51.92 -0.36 0.51 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.56 7.80 -51.93 -0.40 0.16 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.88 6.89 -51.93 -0.36 0.53 16 37 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -32.64 345.96 -8.10 -40.74 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.82 Total: 2.54 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.93 Total: 3.02 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.40 Total: -40.19 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.94 Total: -27.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.64 -8.10 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837847964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.034 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds