Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53003 * 109.47122 * 120.00008 * 2 1 3 5 5 C 1.53000 * 109.47330 * 64.99844 * 4 2 1 6 6 H 1.09005 * 115.56160 * 29.30938 * 5 4 2 7 7 C 1.53004 * 117.49889 * 243.62627 * 5 4 2 8 8 C 1.52991 * 117.50351 * 175.00260 * 5 4 2 9 9 H 1.09004 * 117.51482 * 0.02562 * 8 5 4 10 10 C 1.50702 * 117.50018 * 214.98120 * 8 5 4 11 11 O 1.20822 * 119.99854 * 359.70547 * 10 8 5 12 12 O 1.34234 * 119.99997 * 179.97438 * 10 8 5 13 13 C 1.45199 * 116.99947 * 179.72219 * 12 10 8 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00261 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00280 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47243 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00341 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00201 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99547 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47021 * 90.00339 * 22 20 18 24 24 H 1.48496 * 109.46744 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47302 * 330.00262 * 22 20 18 26 26 H 1.08999 * 109.46741 * 300.00086 * 1 2 3 27 27 H 1.08993 * 109.47303 * 60.00038 * 1 2 3 28 28 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46964 * 239.99418 * 2 1 3 30 30 H 1.09001 * 109.46914 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47304 * 299.99723 * 3 2 1 32 32 H 1.08999 * 109.47361 * 60.00294 * 3 2 1 33 33 H 1.09004 * 109.46860 * 304.99781 * 4 2 1 34 34 H 1.08993 * 109.47289 * 184.99882 * 4 2 1 35 35 H 1.09002 * 117.50076 * 145.01790 * 7 5 4 36 36 H 1.08997 * 117.51971 * 359.97438 * 7 5 4 37 37 H 1.08997 * 109.46967 * 299.99772 * 13 12 10 38 38 H 1.09002 * 109.46640 * 59.99976 * 13 12 10 39 39 H 0.97000 * 119.99896 * 0.02562 * 16 14 13 40 40 H 1.09002 * 109.47252 * 300.00697 * 17 16 14 41 41 H 1.09002 * 109.47061 * 60.00867 * 17 16 14 42 42 H 0.97003 * 119.99911 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 1 1.5388 -2.6156 0.1868 7 6 0.6790 -2.7109 2.2655 8 6 2.1538 -3.1170 2.2938 9 1 2.7830 -2.6732 3.0653 10 6 2.4922 -4.5359 1.9153 11 8 2.3453 -4.9085 0.7754 12 8 2.9517 -5.3874 2.8458 13 6 3.2512 -6.7400 2.4112 14 6 3.7519 -7.5448 3.5827 15 8 3.8465 -7.0293 4.6765 16 7 4.0936 -8.8377 3.4154 17 6 4.5809 -9.6200 4.5542 18 6 4.8916 -11.0238 4.1031 19 1 4.7416 -11.3052 3.0712 20 6 5.3675 -11.9493 5.0077 21 7 5.6392 -13.1742 4.6139 22 14 5.6277 -11.4624 6.7923 23 1 4.3838 -11.7188 7.5617 24 1 6.7389 -12.2628 7.3667 25 1 5.9673 -10.0187 6.8672 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.0466 -3.4700 1.9732 36 1 0.3383 -2.0000 3.0183 37 1 2.3481 -7.2018 2.0122 38 1 4.0174 -6.7113 1.6365 39 1 4.0176 -9.2501 2.5407 40 1 5.4844 -9.1581 4.9522 41 1 3.8154 -9.6483 5.3296 42 1 5.9736 -13.8254 5.2504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837972040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -120.624952 kcal Electronic energy + Delta-G solvation = -21261.434644 eV Core-core repulsion = 17820.818082 eV Total energy + Delta-G solvation = -3440.616562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82123 -39.10116 -38.25489 -36.41855 -35.31140 -34.38648 -32.44454 -29.70901 -28.18218 -27.52201 -27.20832 -24.70426 -22.17916 -21.66608 -20.47928 -20.31965 -20.12061 -18.00480 -17.53852 -16.73685 -16.59801 -15.84442 -15.59461 -15.16961 -14.97032 -14.59452 -14.46692 -14.09365 -13.72350 -13.37640 -13.11467 -12.94022 -12.66069 -12.46805 -12.39740 -12.22966 -12.09215 -11.90636 -11.60048 -11.33244 -11.08250 -11.03749 -10.84845 -10.74987 -10.71612 -10.51360 -10.36280 -10.01157 -9.55463 -9.35640 -8.82940 -8.28311 -6.25185 -4.28322 1.93433 2.28343 3.01485 3.24625 3.31410 3.39378 3.40095 3.81084 4.20001 4.30015 4.32279 4.42938 4.58404 4.61566 4.76439 4.84972 5.05521 5.09340 5.09941 5.15939 5.21372 5.25587 5.27155 5.32161 5.36802 5.42667 5.52898 5.58953 5.65954 5.78968 5.88395 5.92776 6.02110 6.27526 6.71967 6.99680 7.08160 7.30532 7.62214 8.03731 8.40031 8.66790 8.78642 9.33822 10.86543 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.052650 B = 0.002274 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.682205 B =12309.098647 C =12517.501559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.087 4.087 5 C -0.113 4.113 6 H 0.120 0.880 7 C -0.143 4.143 8 C -0.166 4.166 9 H 0.137 0.863 10 C 0.491 3.509 11 O -0.511 6.511 12 O -0.325 6.325 13 C 0.049 3.951 14 C 0.502 3.498 15 O -0.536 6.536 16 N -0.700 5.700 17 C 0.222 3.778 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.890 5.890 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.399 0.601 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 26.158 -8.773 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.125 4.125 5 C -0.131 4.131 6 H 0.138 0.862 7 C -0.180 4.180 8 C -0.185 4.185 9 H 0.155 0.845 10 C 0.335 3.665 11 O -0.400 6.400 12 O -0.240 6.240 13 C -0.029 4.029 14 C 0.285 3.715 15 O -0.414 6.414 16 N -0.350 5.350 17 C 0.100 3.900 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.233 0.767 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.450 26.169 -8.230 29.014 hybrid contribution 0.228 -0.439 0.413 0.644 sum -9.222 25.730 -7.817 28.429 Atomic orbital electron populations 1.21863 0.95041 1.02097 1.01526 1.21110 0.96139 0.96021 0.98080 1.21846 1.01030 0.95922 1.01788 1.21324 1.01217 0.91421 0.98500 1.22581 1.00872 0.94202 0.95414 0.86186 1.23212 0.89984 1.03153 1.01641 1.21821 1.01097 0.89873 1.05740 0.84509 1.22662 0.73327 0.87376 0.83162 1.90658 1.49985 1.78124 1.21198 1.86548 1.75356 1.21597 1.40481 1.22834 1.02859 0.80110 0.97064 1.19924 0.79352 0.83035 0.89168 1.90701 1.53820 1.70548 1.26312 1.46067 1.64670 1.09493 1.14768 1.19556 0.94562 0.91017 0.84829 1.21068 1.46121 0.92779 0.98463 0.90119 1.24792 0.94144 0.94573 0.99073 1.69875 1.43792 1.03512 1.35557 0.86812 0.78553 0.79612 0.84693 1.19779 1.20825 1.18476 0.92753 0.92951 0.92243 0.90970 0.92647 0.92668 0.92676 0.91209 0.91031 0.87987 0.87116 0.88314 0.88283 0.76701 0.95418 0.95863 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.01 37.16 0.33 -0.48 16 2 C -0.10 -0.55 2.88 -90.62 -0.26 -0.81 16 3 C -0.15 -0.77 9.19 37.16 0.34 -0.42 16 4 C -0.09 -0.54 4.96 -26.73 -0.13 -0.67 16 5 C -0.11 -0.89 4.24 -90.62 -0.38 -1.27 16 6 H 0.12 1.09 7.60 -51.93 -0.39 0.70 16 7 C -0.14 -1.09 9.88 -26.73 -0.26 -1.36 16 8 C -0.17 -1.62 6.02 -91.78 -0.55 -2.18 16 9 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 10 C 0.49 6.62 7.74 36.01 0.28 6.90 16 11 O -0.51 -7.70 16.01 -18.75 -0.30 -8.00 16 12 O -0.33 -5.09 9.76 -45.92 -0.45 -5.54 16 13 C 0.05 0.73 5.94 36.00 0.21 0.94 16 14 C 0.50 9.68 7.91 -10.99 -0.09 9.60 16 15 O -0.54 -12.50 16.50 -14.11 -0.23 -12.74 16 16 N -0.70 -13.98 5.55 -61.48 -0.34 -14.32 16 17 C 0.22 5.40 4.50 -5.20 -0.02 5.38 16 18 C -0.55 -14.83 9.83 -34.44 -0.34 -15.17 16 19 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 22 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.38 7.88 -51.93 -0.41 -0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.40 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 41 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -33.08 357.24 -7.74 -40.83 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.94 Total: 0.72 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.97 Total: 2.55 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.43 Total: -39.78 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.98 Total: -26.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -7.74 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837972040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.798 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds