Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.46824 * 2 1 4 4 C 1.50701 * 109.47181 * 240.00294 * 2 1 3 5 5 O 1.20824 * 119.99669 * 239.99640 * 4 2 1 6 6 O 1.34229 * 120.00353 * 59.99552 * 4 2 1 7 7 C 1.45190 * 117.00306 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47462 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99518 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00299 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99966 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47026 * 179.97438 * 11 10 8 13 13 H 1.08008 * 120.00546 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00315 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99496 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00411 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46905 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47085 * 120.00326 * 16 14 12 19 19 H 1.48503 * 109.47080 * 240.00205 * 16 14 12 20 20 C 1.52999 * 109.47622 * 119.99919 * 2 1 3 21 21 C 1.53788 * 113.61334 * 302.77619 * 20 2 1 22 22 C 1.53784 * 87.07888 * 139.97485 * 21 20 2 23 23 C 1.53779 * 87.08375 * 334.56812 * 22 21 20 24 24 H 1.09007 * 109.47214 * 293.39534 * 1 2 3 25 25 H 1.09000 * 109.47719 * 53.39611 * 1 2 3 26 26 H 1.09000 * 109.47067 * 173.40281 * 1 2 3 27 27 H 1.08999 * 109.46711 * 176.34802 * 3 2 1 28 28 H 1.08994 * 109.47210 * 296.34693 * 3 2 1 29 29 H 1.08999 * 109.47080 * 56.34997 * 3 2 1 30 30 H 1.08996 * 109.47441 * 300.00342 * 7 6 4 31 31 H 1.09005 * 109.47263 * 60.00222 * 7 6 4 32 32 H 0.96998 * 119.99904 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47397 * 300.00618 * 11 10 8 34 34 H 1.09006 * 109.47110 * 60.00489 * 11 10 8 35 35 H 0.96994 * 119.99314 * 179.97438 * 15 14 12 36 36 H 1.08993 * 112.91199 * 171.52007 * 20 2 1 37 37 H 1.08999 * 113.61379 * 25.42803 * 21 20 2 38 38 H 1.08998 * 113.69081 * 254.53860 * 21 20 2 39 39 H 1.09004 * 113.61217 * 89.11709 * 22 21 20 40 40 H 1.09002 * 113.61294 * 220.01373 * 22 21 20 41 41 H 1.08999 * 113.61373 * 139.98129 * 23 22 21 42 42 H 1.09001 * 113.60931 * 270.87948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7270 -1.6927 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.2267 -0.9862 -3.5896 8 6 1.7628 -0.3290 -4.8640 9 8 1.0634 0.6606 -4.8160 10 7 2.1242 -0.8416 -6.0569 11 6 1.6727 -0.2030 -7.2957 12 6 2.2111 -0.9652 -8.4789 13 1 2.8277 -1.8384 -8.3237 14 6 1.9168 -0.5481 -9.7597 15 7 1.1664 0.5155 -9.9487 16 14 2.5836 -1.4933 -11.2264 17 1 3.3936 -2.6424 -10.7480 18 1 1.4528 -1.9936 -12.0485 19 1 3.4343 -0.5957 -12.0486 20 6 2.0400 -0.7212 1.2492 21 6 1.5262 -0.1127 2.5648 22 6 1.3692 -1.5537 3.0784 23 6 1.2318 -1.9796 1.6071 24 1 -0.3634 0.4081 0.9432 25 1 -0.3634 0.6127 -0.8250 26 1 -0.3633 -1.0209 -0.1181 27 1 3.1279 1.4433 0.0655 28 1 1.7310 1.9372 -0.9209 29 1 1.6241 1.9749 0.8555 30 1 3.3161 -0.9860 -3.5569 31 1 1.8624 -2.0131 -3.5566 32 1 2.6826 -1.6338 -6.0952 33 1 0.5832 -0.2029 -7.3283 34 1 2.0373 0.8237 -7.3290 35 1 0.9597 0.8091 -10.8497 36 1 3.1177 -0.8839 1.2349 37 1 0.5805 0.4189 2.4599 38 1 2.2782 0.4635 3.1039 39 1 2.2636 -1.9440 3.5642 40 1 0.4643 -1.7119 3.6652 41 1 1.7470 -2.9109 1.3722 42 1 0.2055 -1.9583 1.2406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838158046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -116.744403 kcal Electronic energy + Delta-G solvation = -22293.642898 eV Core-core repulsion = 18853.194609 eV Total energy + Delta-G solvation = -3440.448289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13180 -39.43348 -38.52014 -36.24610 -34.39936 -34.23869 -32.41253 -29.20503 -27.82981 -26.73999 -26.05066 -25.53957 -23.69758 -22.45223 -20.51638 -19.93432 -18.75957 -17.56266 -17.36417 -16.59100 -16.56514 -15.65933 -15.44489 -15.28935 -14.99820 -14.70053 -14.30038 -13.72567 -13.47324 -13.16510 -12.95711 -12.76523 -12.61941 -12.30431 -12.06691 -11.99480 -11.96370 -11.76085 -11.59510 -11.42182 -10.99673 -10.94914 -10.68762 -10.68209 -10.59920 -10.35677 -10.34970 -10.19889 -9.43156 -9.16893 -8.79445 -7.99300 -6.20671 -4.27912 2.17418 2.44831 3.18126 3.21719 3.28944 3.32018 3.92702 4.24510 4.29512 4.32279 4.42039 4.57129 4.66924 4.75849 4.92454 4.97646 5.15596 5.17333 5.25024 5.30772 5.34830 5.43714 5.45373 5.53166 5.58060 5.60598 5.63135 5.72040 5.81051 5.95191 6.01074 6.01926 6.27274 6.40809 7.22005 7.30660 7.44959 7.59261 7.73791 7.91105 8.49705 8.70701 8.96191 9.38551 10.89550 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047296 B = 0.002709 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.870350 B =10332.998710 C =10625.263497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.143 4.143 4 C 0.468 3.532 5 O -0.509 6.509 6 O -0.326 6.326 7 C 0.047 3.953 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.091 4.091 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.141 4.141 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -2.674 24.188 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 C -0.200 4.200 4 C 0.311 3.689 5 O -0.396 6.396 6 O -0.240 6.240 7 C -0.030 4.030 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.357 5.357 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.109 4.109 21 C -0.172 4.172 22 C -0.179 4.179 23 C -0.178 4.178 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.226 0.774 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.636 -2.124 24.035 24.137 hybrid contribution 0.791 -1.052 -1.056 1.688 sum 1.427 -3.176 22.979 23.241 Atomic orbital electron populations 1.22029 0.91653 1.03107 1.03651 1.20462 0.97908 0.96618 0.89215 1.21864 1.01466 0.92827 1.03847 1.23790 0.77392 0.82808 0.84925 1.90637 1.35750 1.25920 1.87333 1.86568 1.68910 1.54505 1.14053 1.22851 1.00299 0.96157 0.83741 1.19895 0.81997 0.85294 0.84541 1.90703 1.37609 1.25663 1.87166 1.46368 1.51937 1.31183 1.06236 1.19176 0.95863 0.93728 0.78162 1.21247 1.33303 1.13156 0.90546 0.91728 1.24962 0.94859 0.95097 0.99123 1.69988 1.36284 1.23630 1.22296 0.86334 0.78733 0.79692 0.82001 1.19607 1.20760 1.20755 1.22502 1.00667 0.96191 0.91549 1.23035 1.01680 0.96711 0.95773 1.22784 1.01942 0.96602 0.96584 1.23087 1.00871 0.97999 0.95885 0.90755 0.90604 0.91780 0.92118 0.90618 0.90918 0.88682 0.88674 0.77448 0.95262 0.95261 0.92428 0.88413 0.89511 0.91326 0.90289 0.91440 0.91189 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.38 37.15 0.27 -1.08 16 2 C -0.04 -0.42 0.63 -155.66 -0.10 -0.52 16 3 C -0.14 -1.32 8.20 37.16 0.30 -1.02 16 4 C 0.47 6.49 6.51 36.01 0.23 6.72 16 5 O -0.51 -7.83 15.55 -18.75 -0.29 -8.12 16 6 O -0.33 -5.20 9.52 -45.90 -0.44 -5.64 16 7 C 0.05 0.73 5.94 36.01 0.21 0.95 16 8 C 0.50 10.08 7.91 -10.99 -0.09 9.99 16 9 O -0.53 -13.04 16.50 -14.11 -0.23 -13.27 16 10 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 11 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 12 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 13 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 14 C 0.06 1.74 5.46 -17.81 -0.10 1.65 16 15 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.09 -0.82 2.44 -89.80 -0.22 -1.04 16 21 C -0.13 -0.92 6.69 -25.91 -0.17 -1.09 16 22 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 23 C -0.14 -1.23 7.19 -25.92 -0.19 -1.42 16 24 H 0.07 0.52 6.09 -51.92 -0.32 0.20 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.59 6.47 -51.93 -0.34 0.26 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 29 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.10 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.09 0.53 6.14 -51.93 -0.32 0.21 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.73 5.67 -51.93 -0.29 0.43 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -32.65 346.05 -7.36 -40.00 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.59 Total: 2.70 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.39 Total: 3.58 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.40 Total: -40.14 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.96 Total: -27.02 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.65 -7.36 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838158046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.742 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds