Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34425 * 124.34592 * 2 1 4 4 O 1.21280 * 124.94392 * 0.38930 * 3 2 1 5 5 C 1.51288 * 110.11357 * 180.40770 * 3 2 1 6 6 C 1.54631 * 104.19528 * 16.25490 * 5 3 2 7 7 C 1.46765 * 124.35294 * 179.70280 * 2 1 3 8 8 H 1.09002 * 110.24161 * 281.98194 * 7 2 1 9 9 C 1.50696 * 110.24534 * 43.98356 * 7 2 1 10 10 O 1.20828 * 120.00193 * 18.54558 * 9 7 2 11 11 O 1.34227 * 119.99976 * 198.55048 * 9 7 2 12 12 C 1.45199 * 116.99941 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47008 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47186 * 300.00017 * 13 12 11 15 15 C 1.53001 * 109.47315 * 59.99993 * 13 12 11 16 16 C 1.53007 * 109.47200 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.47195 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00197 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00199 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00201 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99710 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47488 * 89.99752 * 21 19 17 23 23 H 1.48504 * 109.47003 * 209.99617 * 21 19 17 24 24 H 1.48499 * 109.46893 * 329.99432 * 21 19 17 25 25 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46813 * 240.02361 * 1 2 3 27 27 H 1.09004 * 109.47041 * 120.02488 * 1 2 3 28 28 H 1.08996 * 110.48510 * 134.93241 * 5 3 2 29 29 H 1.08998 * 110.48581 * 257.44438 * 5 3 2 30 30 H 1.08990 * 110.96857 * 93.32047 * 6 5 3 31 31 H 1.09004 * 110.96692 * 217.08741 * 6 5 3 32 32 H 1.09001 * 109.47352 * 299.99568 * 12 11 9 33 33 H 1.08997 * 109.47534 * 59.99741 * 12 11 9 34 34 H 1.08998 * 109.46991 * 60.00081 * 14 13 12 35 35 H 1.09002 * 109.47047 * 179.97438 * 14 13 12 36 36 H 1.08997 * 109.46872 * 299.99701 * 14 13 12 37 37 H 1.09004 * 109.46876 * 59.99675 * 15 13 12 38 38 H 1.09001 * 109.47484 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47177 * 300.00112 * 15 13 12 40 40 H 1.08996 * 109.46952 * 300.00410 * 16 13 12 41 41 H 1.09006 * 109.46659 * 60.00584 * 16 13 12 42 42 H 0.97000 * 120.00017 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7945 2.2443 0.0068 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7486 -0.4358 7 6 2.2932 -1.2116 0.0063 8 1 2.3307 -1.6376 1.0089 9 6 1.7475 -2.2213 -0.9703 10 8 0.9905 -1.8691 -1.8437 11 8 2.1025 -3.5119 -0.8700 12 6 1.5380 -4.4285 -1.8444 13 6 2.0541 -5.8430 -1.5727 14 6 3.5801 -5.8588 -1.6820 15 6 1.6391 -6.2758 -0.1651 16 6 1.4587 -6.8090 -2.5991 17 6 1.9676 -8.2021 -2.3319 18 1 2.6473 -8.3807 -1.5118 19 6 1.5654 -9.2487 -3.1344 20 7 2.0091 -10.4644 -2.9009 21 14 0.3903 -8.9396 -4.5532 22 1 1.1666 -8.6239 -5.7792 23 1 -0.4329 -10.1532 -4.7875 24 1 -0.4969 -7.7961 -4.2209 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5135 0.8902 27 1 -0.3633 -0.5142 -0.8898 28 1 4.2326 1.3461 -0.7337 29 1 4.1200 0.8553 0.9845 30 1 3.8269 -0.8446 -1.5141 31 1 4.4754 -1.3009 0.0966 32 1 0.4508 -4.4170 -1.7668 33 1 1.8339 -4.1205 -2.8471 34 1 4.0038 -5.1707 -0.9505 35 1 3.9478 -6.8664 -1.4880 36 1 3.8757 -5.5505 -2.6848 37 1 0.5519 -6.2645 -0.0873 38 1 2.0064 -7.2837 0.0283 39 1 2.0628 -5.5877 0.5663 40 1 0.3716 -6.7976 -2.5208 41 1 1.7541 -6.5009 -3.6021 42 1 1.7264 -11.2007 -3.4657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838877175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -128.355542 kcal Electronic energy + Delta-G solvation = -22879.806524 eV Core-core repulsion = 19438.854738 eV Total energy + Delta-G solvation = -3440.951786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33986 -39.90964 -37.58329 -36.49595 -35.62316 -33.15163 -32.35854 -29.32556 -27.93560 -26.94917 -26.53426 -26.44215 -23.42961 -22.49779 -21.15523 -19.74319 -18.37735 -18.12385 -17.07403 -16.91079 -16.55698 -16.32732 -16.16972 -14.93305 -14.30613 -14.26144 -14.11532 -13.93161 -13.75076 -13.40619 -13.12129 -12.86371 -12.76868 -12.51523 -12.34882 -12.26802 -12.10325 -11.57353 -11.42574 -11.13252 -11.04570 -10.71865 -10.67800 -10.52292 -10.45927 -10.17953 -9.93884 -9.80989 -9.63177 -9.10058 -9.05002 -8.59155 -6.09334 -4.07199 1.95472 2.12617 2.40898 2.84132 3.26485 3.34968 3.37464 3.86084 3.95495 4.38010 4.40113 4.47914 4.66372 4.92347 5.03773 5.21084 5.25644 5.26274 5.31004 5.31637 5.39400 5.46529 5.58646 5.62468 5.83232 5.99574 6.01274 6.17254 6.39576 6.41787 6.58873 6.59384 6.68292 6.86649 6.99112 7.01443 7.12696 7.27072 7.62006 7.72356 7.80936 8.47386 8.94827 9.52590 11.03284 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035744 B = 0.003405 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.165821 B = 8222.333245 C = 8546.666671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.521 3.479 4 O -0.528 6.528 5 C -0.153 4.153 6 C -0.118 4.118 7 C 0.140 3.860 8 H 0.120 0.880 9 C 0.450 3.550 10 O -0.500 6.500 11 O -0.343 6.343 12 C 0.077 3.923 13 C -0.049 4.049 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.003 4.003 17 C -0.511 4.511 18 H 0.080 0.920 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.874 3.126 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.018 0.982 41 H 0.013 0.987 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 18.595 7.543 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.339 5.339 3 C 0.309 3.691 4 O -0.405 6.405 5 C -0.193 4.193 6 C -0.156 4.156 7 C 0.034 3.966 8 H 0.138 0.862 9 C 0.291 3.709 10 O -0.387 6.387 11 O -0.258 6.258 12 C 0.004 3.996 13 C -0.049 4.049 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.549 4.549 18 H 0.098 0.902 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.701 3.299 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.305 19.066 7.197 20.509 hybrid contribution -0.922 -0.194 -1.065 1.422 sum 1.382 18.872 6.131 19.891 Atomic orbital electron populations 1.21814 0.77202 1.04082 1.02788 1.47922 1.07001 1.05676 1.73342 1.20858 0.89311 0.84055 0.74834 1.90738 1.78692 1.20694 1.50341 1.22394 0.94613 0.96929 1.05387 1.22649 0.93752 0.95444 1.03772 1.21272 0.91711 0.84426 0.99188 0.86235 1.23597 0.79270 0.83511 0.84557 1.90659 1.33384 1.80473 1.34211 1.86488 1.66660 1.17399 1.55232 1.23571 0.97901 0.88238 0.89891 1.20598 0.96706 0.89533 0.98099 1.21734 0.94266 1.02436 1.00051 1.21734 1.00167 1.01948 0.94637 1.19626 0.96031 0.95089 0.93267 1.21024 1.28539 0.89597 1.15741 0.90183 1.24983 0.95930 0.95085 0.97325 1.69890 1.44913 0.99692 1.39560 0.86875 0.81806 0.77906 0.83265 1.20313 1.21375 1.19120 0.89665 0.92019 0.90135 0.87315 0.87010 0.89139 0.87211 0.91525 0.91491 0.93913 0.90943 0.93793 0.93824 0.90924 0.93950 0.96401 0.96837 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.49 59.85 0.63 1.48 16 2 N -0.60 -6.41 3.00 -173.90 -0.52 -6.93 16 3 C 0.52 5.81 8.02 -10.85 -0.09 5.73 16 4 O -0.53 -7.89 17.35 5.56 0.10 -7.80 16 5 C -0.15 -1.02 6.86 -26.74 -0.18 -1.20 16 6 C -0.12 -0.77 6.67 -25.00 -0.17 -0.93 16 7 C 0.14 1.25 3.83 -68.07 -0.26 0.99 16 8 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.45 5.66 6.82 36.00 0.25 5.90 16 10 O -0.50 -7.74 14.22 -18.75 -0.27 -8.01 16 11 O -0.34 -4.69 8.88 -39.25 -0.35 -5.04 16 12 C 0.08 1.24 4.32 37.16 0.16 1.40 16 13 C -0.05 -0.89 0.61 -154.51 -0.09 -0.99 16 14 C -0.13 -2.20 8.08 37.16 0.30 -1.90 16 15 C -0.13 -2.22 8.08 37.16 0.30 -1.92 16 16 C 0.00 -0.06 3.11 -27.88 -0.09 -0.15 16 17 C -0.51 -13.45 8.20 -34.44 -0.28 -13.73 16 18 H 0.08 2.23 5.92 -52.49 -0.31 1.92 16 19 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 21 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 H 0.08 0.89 7.53 -51.93 -0.39 0.50 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 35 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 39 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 41 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -32.66 338.69 -6.11 -38.77 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.66 Total: -2.99 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 0.37 Total: -3.53 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.25 Total: -32.90 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.52 Total: -20.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.66 -6.11 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838877175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.582 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds