Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99698 * 2 1 4 4 H 1.48498 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47353 * 300.00209 * 3 2 1 6 6 H 1.48506 * 109.47247 * 60.00075 * 3 2 1 7 7 C 1.37870 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99852 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46915 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99773 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99676 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99793 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.46906 * 179.97438 * 13 11 10 15 15 C 1.34229 * 116.99739 * 180.02562 * 14 13 11 16 16 O 1.20823 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99898 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47344 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46817 * 64.99877 * 18 17 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99683 * 18 17 15 24 24 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46995 * 60.00067 * 9 7 2 26 26 H 1.09003 * 109.47193 * 299.99545 * 9 7 2 27 27 H 0.97000 * 120.00230 * 359.97438 * 10 9 7 28 28 H 1.08994 * 109.47467 * 59.99671 * 13 11 10 29 29 H 1.09003 * 109.47315 * 299.99729 * 13 11 10 30 30 H 1.09008 * 109.47224 * 59.99630 * 17 15 14 31 31 H 1.08997 * 109.47214 * 299.99624 * 17 15 14 32 32 H 1.09002 * 109.47070 * 305.00057 * 18 17 15 33 33 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 34 34 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 35 35 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 37 37 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 38 38 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 41 41 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 42 42 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2033 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0029 12 8 0.5616 -5.1049 -0.0039 13 6 2.7334 -6.0286 -0.0032 14 8 2.0074 -7.2862 -0.0042 15 6 2.7386 -8.4118 -0.0041 16 8 3.9451 -8.3485 -0.0037 17 6 2.0545 -9.7546 -0.0045 18 6 3.1083 -10.8639 -0.0049 19 6 3.9015 -10.8141 1.3024 20 6 4.9549 -11.9238 1.3024 21 6 4.2638 -13.2830 1.1765 22 6 3.4706 -13.3328 -0.1309 23 6 2.4177 -12.2233 -0.1310 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5562 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 3.1569 -3.4353 -0.0010 28 1 3.3595 -5.9717 0.8871 29 1 3.3607 -5.9701 -0.8928 30 1 1.4319 -9.8450 -0.8948 31 1 1.4315 -9.8452 0.8852 32 1 3.7858 -10.7210 -0.8467 33 1 4.3935 -9.8457 1.3923 34 1 3.2239 -10.9570 2.1442 35 1 5.5197 -11.8886 2.2339 36 1 5.6325 -11.7813 0.4605 37 1 3.5862 -13.4254 2.0183 38 1 5.0143 -14.0735 1.1760 39 1 2.9787 -14.3012 -0.2207 40 1 4.1483 -13.1903 -0.9726 41 1 1.7402 -12.3662 0.7107 42 1 1.8526 -12.2588 -1.0625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845140419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -160.143942 kcal Electronic energy + Delta-G solvation = -21683.775796 eV Core-core repulsion = 18241.445562 eV Total energy + Delta-G solvation = -3442.330234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75781 -39.05793 -38.42162 -36.32083 -34.25508 -33.10661 -32.41700 -30.99264 -29.47447 -27.74235 -26.41312 -22.98967 -22.79135 -22.17506 -20.57290 -20.00669 -19.92129 -17.72012 -17.46130 -16.74316 -16.20561 -15.72401 -15.38050 -15.12481 -15.00203 -14.44184 -14.36518 -14.33110 -13.94804 -13.27062 -13.00226 -12.72638 -12.46124 -12.43680 -12.23396 -12.01561 -11.94392 -11.73618 -11.39251 -11.24538 -10.99978 -10.95332 -10.80853 -10.75533 -10.64663 -10.36379 -10.35697 -10.08618 -9.43383 -9.18046 -8.79780 -7.99837 -6.20769 -4.28149 2.14390 2.46093 3.17318 3.21611 3.28840 3.31908 3.96853 4.29914 4.31784 4.41232 4.47050 4.74649 4.80514 4.92935 5.02841 5.13830 5.15411 5.18145 5.21441 5.24270 5.27497 5.33217 5.34418 5.39429 5.45761 5.61403 5.76352 5.85318 5.88392 5.90380 5.99759 6.13215 6.21487 6.43883 7.21687 7.30127 7.44675 7.58815 7.71602 7.90816 8.49157 8.70339 8.95701 9.38351 10.89389 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.053719 B = 0.002342 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.106588 B =11953.165315 C =12302.340527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.535 6.535 13 C 0.049 3.951 14 O -0.331 6.331 15 C 0.460 3.540 16 O -0.509 6.509 17 C -0.111 4.111 18 C -0.075 4.075 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.393 0.607 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -24.768 0.827 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.246 6.246 15 C 0.303 3.697 16 O -0.398 6.398 17 C -0.148 4.148 18 C -0.094 4.094 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.226 0.774 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.640 -24.717 0.828 25.884 hybrid contribution 1.003 1.177 -0.004 1.547 sum 8.643 -23.539 0.823 25.089 Atomic orbital electron populations 1.69985 1.06112 1.27303 1.48780 1.24961 0.94947 0.99523 0.94626 0.86333 0.79811 0.82816 0.77781 1.19606 1.20765 1.20757 1.21245 0.93369 0.90290 1.53372 0.91711 1.19182 0.88178 0.81569 0.98027 1.46374 1.11506 1.05386 1.72454 1.19915 0.89145 0.84011 0.78733 1.90707 1.16351 1.84570 1.49577 1.22841 0.94354 0.81214 1.04474 1.86579 1.40580 1.14078 1.83331 1.23853 0.86670 0.86905 0.72248 1.90629 1.15610 1.87891 1.45640 1.21510 0.99556 0.87590 1.06174 1.21024 0.95909 0.92603 0.99846 1.21753 0.97862 1.00133 0.96377 1.21494 0.97861 0.94342 1.01755 1.21566 0.99184 0.97327 0.97786 1.21500 0.97825 0.98252 0.98009 1.21576 0.97848 0.93631 1.02161 0.92421 0.95253 0.95255 0.77430 0.88605 0.88592 0.87455 0.87506 0.90127 0.90153 0.92320 0.92160 0.91969 0.92068 0.92284 0.92010 0.91959 0.91626 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 10 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 11 C 0.50 10.04 7.91 -10.99 -0.09 9.96 16 12 O -0.53 -13.12 16.50 -14.10 -0.23 -13.35 16 13 C 0.05 0.74 5.94 36.00 0.21 0.96 16 14 O -0.33 -5.17 9.76 -45.90 -0.45 -5.62 16 15 C 0.46 5.93 7.68 36.00 0.28 6.21 16 16 O -0.51 -7.29 13.72 -18.75 -0.26 -7.55 16 17 C -0.11 -1.00 5.29 -27.88 -0.15 -1.15 16 18 C -0.08 -0.63 1.84 -90.62 -0.17 -0.79 16 19 C -0.12 -1.11 4.94 -26.73 -0.13 -1.24 16 20 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 21 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 22 C -0.12 -0.75 5.92 -26.76 -0.16 -0.91 16 23 C -0.11 -0.75 5.20 -26.76 -0.14 -0.89 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.08 0.89 5.96 -51.93 -0.31 0.58 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -32.69 346.65 -8.38 -41.07 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.94 Total: 1.29 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.10 Total: 3.38 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.40 Total: -40.09 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.94 Total: -26.52 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.69 -8.38 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845140419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.073 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds