Wall clock time and date at job start Tue Mar 31 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 113.99835 * 2 1 4 4 C 1.50709 * 109.46697 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99770 * 180.02562 * 4 3 2 6 6 C 1.33077 * 119.99964 * 359.97438 * 4 3 2 7 7 C 1.46952 * 119.99986 * 172.68746 * 6 4 3 8 8 O 1.21535 * 119.99835 * 353.59990 * 7 6 4 9 9 O 1.34798 * 120.00248 * 173.59626 * 7 6 4 10 10 C 1.45194 * 116.99826 * 180.02562 * 9 7 6 11 11 C 1.53042 * 109.45917 * 209.99875 * 10 9 7 12 12 C 1.53192 * 109.31483 * 178.61480 * 11 10 9 13 13 N 1.46931 * 108.89182 * 54.56431 * 12 11 10 14 14 C 1.36936 * 120.62943 * 126.45999 * 13 12 11 15 15 H 1.08003 * 119.99953 * 327.59333 * 14 13 12 16 16 C 1.38813 * 120.00089 * 147.58904 * 14 13 12 17 17 N 1.31617 * 119.99669 * 347.41969 * 16 14 13 18 18 Si 1.86801 * 120.00270 * 167.41972 * 16 14 13 19 19 H 1.48502 * 109.46859 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47037 * 120.00170 * 18 16 14 21 21 H 1.48497 * 109.46847 * 240.00311 * 18 16 14 22 22 C 1.46958 * 118.71763 * 306.64563 * 13 12 11 23 23 C 1.53037 * 109.46310 * 89.93544 * 10 9 7 24 24 H 1.09005 * 109.46781 * 300.00174 * 1 2 3 25 25 H 1.09001 * 109.47391 * 59.99872 * 1 2 3 26 26 H 1.09004 * 109.47541 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47673 * 60.00496 * 3 2 1 28 28 H 1.08993 * 109.47534 * 299.99716 * 3 2 1 29 29 H 1.08998 * 109.46516 * 264.94486 * 5 4 3 30 30 H 1.08994 * 109.47055 * 24.94708 * 5 4 3 31 31 H 1.09000 * 109.47100 * 144.94794 * 5 4 3 32 32 H 1.08002 * 120.00384 * 352.69470 * 6 4 3 33 33 H 1.08997 * 109.45585 * 329.96772 * 10 9 7 34 34 H 1.09001 * 109.49768 * 58.66793 * 11 10 9 35 35 H 1.08998 * 109.49703 * 298.56983 * 11 10 9 36 36 H 1.08999 * 109.58961 * 174.42180 * 12 11 10 37 37 H 1.08995 * 109.58997 * 294.71004 * 12 11 10 38 38 H 0.97007 * 119.99980 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.46251 * 293.57252 * 22 13 12 40 40 H 1.08992 * 109.71189 * 173.28742 * 22 13 12 41 41 H 1.09007 * 109.49340 * 301.33464 * 23 10 9 42 42 H 1.09004 * 109.50228 * 61.42419 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 6 4.3668 2.4279 -0.0002 6 6 4.0848 -0.0151 -0.0006 7 6 5.5403 -0.1357 -0.1632 8 8 6.2074 0.8488 -0.4136 9 8 6.1356 -1.3383 -0.0344 10 6 7.5765 -1.3824 -0.2076 11 6 7.9815 -2.7491 -0.7645 12 6 9.4981 -2.7800 -0.9784 13 7 10.1636 -2.4206 0.2813 14 6 11.1206 -3.2369 0.8223 15 1 11.0551 -4.3069 0.6905 16 6 12.1751 -2.6893 1.5401 17 7 12.3980 -1.3929 1.4961 18 14 13.2775 -3.7922 2.5685 19 1 12.8183 -5.1995 2.4506 20 1 14.6766 -3.6851 2.0826 21 1 13.2135 -3.3687 3.9904 22 6 9.7792 -1.1703 0.9513 23 6 8.2595 -1.1575 1.1433 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 4.6469 2.6765 -1.0238 30 1 3.8053 3.2551 0.4340 31 1 5.2660 2.2500 0.5896 32 1 3.4795 -0.9016 0.1189 33 1 7.8826 -0.6014 -0.9036 34 1 7.4765 -2.9186 -1.7155 35 1 7.6978 -3.5287 -0.0575 36 1 9.8042 -3.7815 -1.2806 37 1 9.7724 -2.0645 -1.7536 38 1 13.1346 -1.0101 1.9980 39 1 10.0768 -0.3218 0.3351 40 1 10.2709 -1.1072 1.9219 41 1 7.9523 -0.1941 1.5504 42 1 7.9732 -1.9520 1.8326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845497849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:13 Heat of formation + Delta-G solvation = -97.686794 kcal Electronic energy + Delta-G solvation = -22471.668988 eV Core-core repulsion = 19032.047099 eV Total energy + Delta-G solvation = -3439.621889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25552 -38.60757 -37.49481 -35.90325 -34.55950 -32.65358 -30.27228 -29.72670 -28.31509 -28.13499 -25.81136 -25.11987 -22.78385 -22.17372 -21.13691 -19.36064 -18.68837 -17.55520 -16.93939 -16.65393 -16.35128 -15.71870 -15.52897 -15.25602 -14.76207 -13.96593 -13.74119 -13.52445 -13.45021 -13.23409 -12.85907 -12.79166 -12.49186 -12.40730 -12.18678 -11.96657 -11.53857 -11.47424 -11.14431 -11.07946 -10.76047 -10.56624 -10.28256 -10.26610 -10.13835 -9.98851 -9.87019 -9.59678 -9.38984 -9.22888 -8.47996 -6.62995 -5.78997 -3.27360 1.11004 3.06726 3.12415 3.26082 3.37940 3.45294 3.47808 4.49230 4.53428 4.83386 4.85323 4.87028 4.94709 5.02878 5.23220 5.30479 5.31890 5.38661 5.42219 5.50164 5.58796 5.64192 5.80747 6.01447 6.07722 6.17917 6.20616 6.27002 6.43658 6.54765 6.60168 6.64723 6.73864 6.75356 6.94294 7.04285 7.34627 7.64241 7.80800 8.12275 8.47569 9.21233 9.82435 10.41763 11.29974 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035704 B = 0.003082 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.028398 B = 9082.771786 C = 9309.684506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.094 3.906 4 C -0.049 4.049 5 C -0.123 4.123 6 C -0.175 4.175 7 C 0.487 3.513 8 O -0.510 6.510 9 O -0.354 6.354 10 C 0.098 3.902 11 C -0.128 4.128 12 C 0.148 3.852 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.178 3.822 23 C -0.153 4.153 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.330 5.491 -3.138 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.018 3.982 4 C -0.049 4.049 5 C -0.179 4.179 6 C -0.194 4.194 7 C 0.334 3.666 8 O -0.401 6.401 9 O -0.271 6.271 10 C 0.045 3.955 11 C -0.168 4.168 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.052 3.948 23 C -0.193 4.193 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.824 5.659 -3.131 22.762 hybrid contribution 0.378 -0.204 0.564 0.709 sum -21.446 5.455 -2.566 22.277 Atomic orbital electron populations 1.22777 0.80430 1.03200 1.00076 1.87904 1.20086 1.27104 1.95508 1.21416 0.89912 0.85463 1.01444 1.22433 0.94121 0.95756 0.92632 1.21124 0.99389 0.93264 1.04078 1.21805 0.90764 0.99595 1.07237 1.21458 0.89461 0.81716 0.73989 1.90804 1.66676 1.37813 1.44813 1.86628 1.26324 1.32715 1.81451 1.22885 0.74122 0.99441 0.99090 1.22224 0.99352 0.95055 1.00119 1.20894 0.88509 0.99020 0.89404 1.44070 1.43363 1.23513 1.20571 1.19203 1.00435 0.89175 1.29739 0.91674 1.25210 0.96712 0.95958 1.01489 1.70009 1.30976 1.10356 1.43270 0.86190 0.80315 0.80111 0.79952 1.20152 1.21618 1.21536 1.20715 0.87161 0.87722 0.99240 1.22662 1.00574 1.00662 0.95363 0.93866 0.93877 0.89253 0.91140 0.90866 0.89890 0.92307 0.88688 0.83575 0.90384 0.92301 0.91200 0.91858 0.96129 0.93577 0.95936 0.89329 0.92864 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.64 9.14 -35.23 -0.32 -3.96 16 3 C 0.09 0.75 6.32 36.01 0.23 0.98 16 4 C -0.05 -0.53 6.11 -101.14 -0.62 -1.15 16 5 C -0.12 -1.31 8.49 36.01 0.31 -1.01 16 6 C -0.18 -2.34 9.48 -37.85 -0.36 -2.69 16 7 C 0.49 8.16 7.72 34.26 0.26 8.43 16 8 O -0.51 -9.37 12.56 -19.29 -0.24 -9.61 16 9 O -0.35 -6.44 9.89 -40.76 -0.40 -6.84 16 10 C 0.10 1.93 2.42 -26.69 -0.06 1.86 16 11 C -0.13 -2.41 5.74 -26.61 -0.15 -2.56 16 12 C 0.15 3.20 6.51 -3.71 -0.02 3.18 16 13 N -0.59 -15.25 2.98 -172.29 -0.51 -15.77 16 14 C -0.26 -7.11 9.56 -15.06 -0.14 -7.25 16 15 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 16 C 0.01 0.15 4.99 -17.43 -0.09 0.06 16 17 N -0.90 -26.56 11.26 55.49 0.63 -25.94 16 18 Si 0.90 21.84 29.57 -169.99 -5.03 16.82 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 C 0.18 4.43 5.24 -3.69 -0.02 4.41 16 23 C -0.15 -3.24 5.72 -26.61 -0.15 -3.39 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.91 8.05 -51.93 -0.42 0.50 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.09 1.27 6.12 -51.93 -0.32 0.95 16 32 H 0.15 1.86 6.92 -52.49 -0.36 1.50 16 33 H 0.08 1.61 7.16 -51.93 -0.37 1.23 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.43 6.28 -51.93 -0.33 2.10 16 41 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -31.70 342.34 -7.26 -38.96 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.83 Total: -0.98 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.29 Total: 2.16 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.11 Total: -41.70 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.97 Total: -20.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.70 -7.26 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.726 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds