Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52994 * 110.62751 * 2 1 4 4 C 1.54371 * 110.70401 * 236.71199 * 2 1 3 5 5 O 1.45943 * 105.07292 * 223.79379 * 4 2 1 6 6 C 1.34563 * 108.40140 * 32.44478 * 5 4 2 7 7 O 1.20827 * 125.94799 * 146.71044 * 6 5 4 8 8 C 1.51507 * 108.10900 * 326.66181 * 6 5 4 9 9 H 1.08999 * 110.50543 * 139.22244 * 8 6 5 10 10 N 1.46505 * 110.40272 * 261.59708 * 8 6 5 11 11 C 1.34777 * 120.00115 * 270.20674 * 10 8 6 12 12 O 1.21282 * 119.99620 * 359.97438 * 11 10 8 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47282 * 89.99593 * 21 19 17 23 23 H 1.48498 * 109.47211 * 210.00040 * 21 19 17 24 24 H 1.48506 * 109.46856 * 330.00220 * 21 19 17 25 25 H 1.09006 * 109.47363 * 296.91060 * 1 2 3 26 26 H 1.09005 * 109.47489 * 56.90854 * 1 2 3 27 27 H 1.09003 * 109.47675 * 176.91090 * 1 2 3 28 28 H 1.09001 * 109.47501 * 183.09091 * 3 2 1 29 29 H 1.09005 * 109.47241 * 303.09001 * 3 2 1 30 30 H 1.08998 * 109.47514 * 63.09159 * 3 2 1 31 31 H 1.09006 * 110.31768 * 342.69803 * 4 2 1 32 32 H 1.09005 * 110.31639 * 104.79232 * 4 2 1 33 33 H 0.97003 * 120.00244 * 90.20703 * 10 8 6 34 34 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 35 35 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 36 36 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 37 37 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 39 39 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 40 40 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 41 41 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 42 42 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0689 1.4319 0.0000 4 6 2.0757 -0.7925 -1.2071 5 8 3.1614 -1.6053 -0.6679 6 6 2.8553 -1.9358 0.6000 7 8 3.1513 -2.9673 1.1554 8 6 2.0759 -0.7890 1.2106 9 1 1.2547 -1.1669 1.8196 10 7 2.9597 0.0578 2.0156 11 6 3.1417 -0.2099 3.3239 12 8 2.5734 -1.1516 3.8349 13 6 4.0504 0.6615 4.1521 14 6 4.0811 0.1436 5.5914 15 6 5.0032 1.0287 6.4324 16 6 5.0344 0.5104 7.8716 17 6 5.9431 1.3817 8.6998 18 1 6.4482 2.2211 8.2450 19 6 6.1297 1.1075 10.0381 20 7 5.5142 0.0857 10.5919 21 14 7.2555 2.1881 11.0649 22 1 6.4693 3.3001 11.6573 23 1 7.8636 1.3783 12.1509 24 1 8.3286 2.7452 10.2025 25 1 -0.3634 0.4651 0.9164 26 1 -0.3634 0.5611 -0.8610 27 1 -0.3634 -1.0262 -0.0554 28 1 3.1573 1.4105 -0.0554 29 1 1.6718 1.9696 -0.8610 30 1 1.7616 1.9358 0.9164 31 1 1.2965 -1.4304 -1.6246 32 1 2.4536 -0.1100 -1.9684 33 1 3.4140 0.8113 1.6070 34 1 3.6792 1.6863 4.1422 35 1 5.0573 0.6358 3.7355 36 1 4.4525 -0.8812 5.6010 37 1 3.0743 0.1690 6.0083 38 1 6.0101 1.0037 6.0157 39 1 4.6314 2.0532 6.4228 40 1 4.0276 0.5351 8.2886 41 1 5.4065 -0.5142 7.8808 42 1 5.6452 -0.1069 11.5335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846652298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -137.315677 kcal Electronic energy + Delta-G solvation = -22214.617713 eV Core-core repulsion = 18773.277387 eV Total energy + Delta-G solvation = -3441.340326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88300 -39.48380 -38.08856 -36.28360 -34.89293 -33.75013 -32.60026 -29.99299 -28.51413 -27.76589 -27.18544 -25.44547 -22.65593 -21.49995 -20.62672 -20.23307 -19.96714 -17.80088 -17.41692 -16.92055 -16.77357 -16.13691 -15.64190 -15.42692 -14.80087 -14.50521 -14.35787 -14.29312 -13.91633 -13.79162 -13.30942 -12.80089 -12.71292 -12.59747 -12.25049 -12.00421 -11.89715 -11.69872 -11.62922 -11.55516 -11.03136 -10.97909 -10.91208 -10.53629 -10.49642 -10.40564 -9.92387 -9.60181 -9.28207 -9.21795 -8.97119 -8.28802 -5.93512 -3.96105 1.49214 2.54741 2.72139 3.15828 3.35092 3.41136 3.43989 3.44365 3.64628 3.96861 4.03546 4.46499 4.50271 4.68306 4.78670 4.81030 4.98367 5.03065 5.13730 5.17426 5.28645 5.30274 5.34406 5.41820 5.51309 5.57100 5.81226 6.01985 6.13632 6.22944 6.29946 6.54777 6.84599 7.02154 7.08220 7.19433 7.24753 7.75902 7.91994 8.07875 8.11481 8.49501 9.11665 9.67463 11.17860 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036386 B = 0.002630 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.340550 B =10642.346328 C =10892.656767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.145 4.145 4 C 0.061 3.939 5 O -0.351 6.351 6 C 0.469 3.531 7 O -0.422 6.422 8 C 0.094 3.906 9 H 0.130 0.870 10 N -0.723 5.723 11 C 0.510 3.490 12 O -0.517 6.517 13 C -0.136 4.136 14 C -0.105 4.105 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.407 0.593 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 4.109 -28.525 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.014 4.014 5 O -0.269 6.269 6 C 0.305 3.695 7 O -0.299 6.299 8 C -0.014 4.014 9 H 0.147 0.853 10 N -0.382 5.382 11 C 0.298 3.702 12 O -0.390 6.390 13 C -0.176 4.176 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.246 0.754 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.751 2.733 -27.798 29.930 hybrid contribution 0.769 0.929 0.398 1.270 sum -9.982 3.662 -27.400 29.390 Atomic orbital electron populations 1.21866 0.91220 1.03035 1.03585 1.22089 0.98167 0.97034 0.93481 1.21871 1.01229 0.93327 1.03827 1.24266 0.88102 0.93220 0.95814 1.87322 1.42815 1.67129 1.29596 1.23775 0.77343 0.86951 0.81462 1.90764 1.48578 1.25611 1.64963 1.22215 0.94814 0.90578 0.93767 0.85272 1.46157 1.49584 1.32649 1.09807 1.21346 0.82022 0.85537 0.81310 1.90753 1.47579 1.29451 1.71259 1.21799 0.99008 0.99379 0.97370 1.21477 1.01537 1.00437 0.90804 1.21646 0.97173 0.97760 0.98163 1.19097 0.97086 0.96454 0.89118 1.21282 1.27268 1.13001 0.94313 0.92762 1.25047 0.96123 0.95340 0.98085 1.69981 1.43141 1.28095 1.12237 0.86610 0.80981 0.80439 0.80046 1.20715 1.21251 1.19925 0.91012 0.91039 0.91695 0.91635 0.90823 0.90686 0.89295 0.86705 0.75407 0.88844 0.88945 0.91666 0.91689 0.93445 0.93445 0.96581 0.96553 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 8.30 37.15 0.31 -0.19 16 2 C -0.11 -0.52 1.09 -153.03 -0.17 -0.68 16 3 C -0.15 -0.47 7.14 37.15 0.27 -0.20 16 4 C 0.06 0.28 7.05 37.88 0.27 0.55 16 5 O -0.35 -3.47 11.17 -39.73 -0.44 -3.91 16 6 C 0.47 5.85 8.14 36.40 0.30 6.15 16 7 O -0.42 -7.28 18.00 -18.32 -0.33 -7.61 16 8 C 0.09 0.89 3.02 -67.91 -0.21 0.68 16 9 H 0.13 1.39 7.15 -51.93 -0.37 1.02 16 10 N -0.72 -7.05 4.58 -53.79 -0.25 -7.29 16 11 C 0.51 7.11 7.83 -10.99 -0.09 7.03 16 12 O -0.52 -9.62 15.63 5.56 0.09 -9.53 16 13 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 27 H 0.06 0.24 8.09 -51.93 -0.42 -0.18 16 28 H 0.06 0.20 7.00 -51.93 -0.36 -0.16 16 29 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 31 H 0.09 0.29 7.77 -51.93 -0.40 -0.12 16 32 H 0.11 0.26 7.82 -51.93 -0.41 -0.15 16 33 H 0.41 2.68 5.97 -40.82 -0.24 2.44 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -37.52 348.11 -7.06 -44.58 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.80 Total: -4.90 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.29 Total: -6.55 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.49 Total: -34.36 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.69 Total: -21.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.52 -7.06 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846652298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.735 kcal (2) G-P(sol) polarization free energy of solvation -37.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds