Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 110.76172 * 2 1 4 4 C 1.54363 * 110.70574 * 236.81034 * 2 1 3 5 5 O 1.45952 * 105.07207 * 259.43225 * 4 2 1 6 6 C 1.34862 * 108.42058 * 327.51587 * 5 4 2 7 7 O 1.20823 * 126.09982 * 213.43536 * 6 5 4 8 8 C 1.51509 * 107.95359 * 33.37276 * 6 5 4 9 9 H 1.08994 * 110.40129 * 220.72993 * 8 6 5 10 10 N 1.46504 * 110.40168 * 98.42391 * 8 6 5 11 11 C 1.34774 * 120.00240 * 88.03348 * 10 8 6 12 12 O 1.21283 * 119.99643 * 359.97438 * 11 10 8 13 13 C 1.50694 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09000 * 109.47847 * 296.81589 * 1 2 3 26 26 H 1.09002 * 109.47333 * 56.81832 * 1 2 3 27 27 H 1.09002 * 109.47426 * 176.81200 * 1 2 3 28 28 H 1.08997 * 109.47396 * 183.18646 * 3 2 1 29 29 H 1.09000 * 109.47232 * 303.18772 * 3 2 1 30 30 H 1.09000 * 109.46933 * 63.18232 * 3 2 1 31 31 H 1.09002 * 110.32339 * 18.32999 * 4 2 1 32 32 H 1.09001 * 110.32664 * 140.53191 * 4 2 1 33 33 H 0.97005 * 119.99919 * 268.03131 * 10 8 6 34 34 H 1.08994 * 109.47211 * 59.99931 * 13 11 10 35 35 H 1.09003 * 109.47615 * 299.99937 * 13 11 10 36 36 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 37 37 H 1.08992 * 109.47494 * 300.00169 * 14 13 11 38 38 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 39 39 H 1.08998 * 109.47285 * 299.99893 * 15 14 13 40 40 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 41 41 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0723 1.4307 0.0000 4 6 2.0757 -0.7904 -1.2084 5 8 2.4517 -2.0941 -0.6706 6 6 2.8730 -1.9258 0.5994 7 8 3.7348 -2.5656 1.1542 8 6 2.0760 -0.7908 1.2094 9 1 2.7214 -0.1573 1.8177 10 7 0.9721 -1.3176 2.0158 11 6 1.1689 -1.6144 3.3156 12 8 2.2600 -1.4459 3.8176 13 6 0.0332 -2.1557 4.1451 14 6 0.5199 -2.4072 5.5737 15 6 -0.6333 -2.9562 6.4162 16 6 -0.1465 -3.2083 7.8446 17 6 -1.2821 -3.7496 8.6742 18 1 -2.2539 -3.8993 8.2273 19 6 -1.0807 -4.0538 10.0039 20 7 0.1028 -3.8720 10.5480 21 14 -2.4886 -4.7241 11.0323 22 1 -2.0160 -4.9689 12.4187 23 1 -3.5988 -3.7382 11.0541 24 1 -2.9700 -5.9987 10.4417 25 1 -0.3635 0.4636 0.9171 26 1 -0.3634 0.5624 -0.8601 27 1 -0.3634 -1.0261 -0.0572 28 1 3.1605 1.4067 -0.0571 29 1 1.6751 1.9698 -0.8600 30 1 1.7675 1.9347 0.9171 31 1 1.3019 -0.9031 -1.9678 32 1 2.9477 -0.2879 -1.6270 33 1 0.0995 -1.4527 1.6141 34 1 -0.3194 -3.0916 3.7118 35 1 -0.7823 -1.4326 4.1608 36 1 0.8727 -1.4715 6.0074 37 1 1.3351 -3.1305 5.5579 38 1 -0.9866 -3.8918 5.9827 39 1 -1.4482 -2.2325 6.4321 40 1 0.2072 -2.2728 8.2783 41 1 0.6684 -3.9321 7.8283 42 1 0.2444 -4.0856 11.4835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846652299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -137.040408 kcal Electronic energy + Delta-G solvation = -22217.884580 eV Core-core repulsion = 18776.556190 eV Total energy + Delta-G solvation = -3441.328390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.85663 -39.47010 -38.09014 -36.26721 -34.89041 -33.74457 -32.59803 -29.99104 -28.52354 -27.76589 -27.17099 -25.44284 -22.65573 -21.49411 -20.62505 -20.22036 -19.96424 -17.79007 -17.40352 -16.91642 -16.77153 -16.13302 -15.63766 -15.41964 -14.79380 -14.50554 -14.35823 -14.29593 -13.91670 -13.79126 -13.31026 -12.80513 -12.71138 -12.59110 -12.24948 -12.00384 -11.89542 -11.69360 -11.63605 -11.55948 -11.02370 -10.96361 -10.90078 -10.52814 -10.52208 -10.40160 -9.91942 -9.59793 -9.27995 -9.21544 -8.97904 -8.28377 -5.93193 -3.95880 1.49507 2.54998 2.72466 3.15794 3.36565 3.40944 3.43108 3.44002 3.64749 3.97132 4.03589 4.46187 4.50411 4.68694 4.78911 4.81189 4.97978 5.02928 5.13548 5.17144 5.28770 5.29989 5.34530 5.41981 5.50809 5.56872 5.81386 6.02281 6.13805 6.22264 6.30104 6.54948 6.84770 7.02357 7.08662 7.19622 7.24968 7.75818 7.92189 8.08101 8.11897 8.49676 9.11685 9.67572 11.18137 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.002633 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.241219 B =10632.043878 C =10889.585153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.061 3.939 5 O -0.352 6.352 6 C 0.469 3.531 7 O -0.420 6.420 8 C 0.095 3.905 9 H 0.128 0.872 10 N -0.723 5.723 11 C 0.509 3.491 12 O -0.516 6.516 13 C -0.136 4.136 14 C -0.105 4.105 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.407 0.593 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 11.932 -28.368 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.014 4.014 5 O -0.270 6.270 6 C 0.305 3.695 7 O -0.297 6.297 8 C -0.013 4.013 9 H 0.146 0.854 10 N -0.383 5.383 11 C 0.297 3.703 12 O -0.390 6.390 13 C -0.176 4.176 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.097 11.505 -27.643 29.962 hybrid contribution -1.152 -0.391 0.392 1.278 sum -0.055 11.114 -27.252 29.431 Atomic orbital electron populations 1.21875 0.91865 1.02743 1.03835 1.22082 0.98260 0.96907 0.93472 1.21863 1.01354 0.92895 1.03584 1.24266 1.01419 0.79920 0.95795 1.87388 1.77967 1.31943 1.29703 1.23837 0.80424 0.83826 0.81433 1.90764 1.26086 1.48010 1.64856 1.22207 0.90994 0.94395 0.93734 0.85388 1.46172 1.12944 1.68574 1.10562 1.21348 0.90930 0.76734 0.81265 1.90756 1.26204 1.50728 1.71284 1.21798 0.96154 1.02212 0.97390 1.21476 0.99590 1.02227 0.90961 1.21648 0.95941 0.99012 0.98144 1.19091 0.96443 0.96957 0.89221 1.21246 0.96867 1.42852 0.95000 0.92811 1.25046 0.95578 0.95885 0.98057 1.69968 1.21755 1.48749 1.12982 0.86668 0.82564 0.79473 0.79327 1.21315 1.20295 1.20290 0.90690 0.90792 0.91593 0.91685 0.91033 0.91017 0.86721 0.89318 0.75385 0.88953 0.88850 0.91689 0.91668 0.93451 0.93446 0.96584 0.96566 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 7.12 37.15 0.26 -0.20 16 2 C -0.11 -0.51 1.09 -153.03 -0.17 -0.68 16 3 C -0.14 -0.49 8.31 37.16 0.31 -0.18 16 4 C 0.06 0.29 7.04 37.87 0.27 0.55 16 5 O -0.35 -3.50 11.18 -40.55 -0.45 -3.95 16 6 C 0.47 5.88 8.16 36.40 0.30 6.18 16 7 O -0.42 -7.28 18.00 -18.28 -0.33 -7.60 16 8 C 0.09 0.89 2.99 -67.91 -0.20 0.69 16 9 H 0.13 1.37 7.20 -51.93 -0.37 1.00 16 10 N -0.72 -7.06 4.62 -53.79 -0.25 -7.31 16 11 C 0.51 7.12 7.83 -10.99 -0.09 7.04 16 12 O -0.52 -9.64 15.66 5.56 0.09 -9.55 16 13 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.07 0.27 7.76 -51.93 -0.40 -0.14 16 26 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.07 0.20 7.02 -51.93 -0.36 -0.16 16 28 H 0.06 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 0.26 7.82 -51.93 -0.41 -0.14 16 32 H 0.09 0.29 7.77 -51.93 -0.40 -0.11 16 33 H 0.41 2.68 5.90 -40.82 -0.24 2.44 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -37.54 348.13 -7.07 -44.61 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -6.80 Total: -4.89 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.29 Total: -6.52 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.49 Total: -34.39 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.70 Total: -21.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.54 -7.07 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846652299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.430 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds