Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 299.99817 * 3 2 1 6 6 H 1.48500 * 109.47381 * 59.99514 * 3 2 1 7 7 C 1.37884 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99477 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99733 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.49868 * 300.06035 * 9 7 2 11 11 C 1.53046 * 109.49256 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.53476 * 178.68413 * 11 9 7 13 13 C 1.53189 * 109.31486 * 61.36557 * 12 11 9 14 14 N 1.46925 * 108.77520 * 305.36570 * 13 12 11 15 15 C 1.34777 * 120.62929 * 233.58070 * 14 13 12 16 16 O 1.21503 * 120.00212 * 180.27314 * 15 14 13 17 17 O 1.34644 * 119.99831 * 0.02562 * 15 14 13 18 18 C 1.45196 * 116.99750 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47070 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.87368 * 53.99236 * 19 18 17 21 21 C 1.54105 * 109.87924 * 174.99917 * 19 18 17 22 22 C 1.54807 * 104.18821 * 121.45383 * 21 19 18 23 23 C 1.54999 * 102.09403 * 20.87628 * 22 21 19 24 24 O 1.43743 * 109.87944 * 292.82929 * 19 18 17 25 25 C 1.46921 * 118.73921 * 53.86049 * 14 13 12 26 26 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.45567 * 58.66558 * 11 9 7 28 28 H 1.08999 * 109.44800 * 298.69913 * 11 9 7 29 29 H 1.09000 * 109.49971 * 301.41200 * 12 11 9 30 30 H 1.09003 * 109.49537 * 181.32283 * 12 11 9 31 31 H 1.09003 * 109.59042 * 185.57449 * 13 12 11 32 32 H 1.09001 * 109.69842 * 65.22292 * 13 12 11 33 33 H 1.09012 * 109.47257 * 299.99923 * 18 17 15 34 34 H 1.08996 * 109.47465 * 59.99979 * 18 17 15 35 35 H 1.09004 * 110.48940 * 240.12974 * 21 19 18 36 36 H 1.09004 * 110.48985 * 2.63988 * 21 19 18 37 37 H 1.08994 * 110.91083 * 139.08146 * 22 21 19 38 38 H 1.09001 * 110.90568 * 262.68184 * 22 21 19 39 39 H 1.09006 * 110.61224 * 81.47736 * 23 22 21 40 40 H 1.08998 * 110.61706 * 204.31513 * 23 22 21 41 41 H 1.09003 * 109.58904 * 65.92628 * 25 14 13 42 42 H 1.08996 * 109.58631 * 186.35575 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6231 -2.5567 0.8895 11 6 2.2451 -3.6629 0.0005 12 6 1.4811 -4.9885 0.0337 13 6 0.6058 -5.1003 -1.2186 14 7 -0.2527 -3.9110 -1.3032 15 6 -1.5891 -4.0361 -1.4258 16 8 -2.2878 -3.0448 -1.4997 17 8 -2.1493 -5.2596 -1.4713 18 6 -3.5940 -5.3185 -1.6036 19 6 -4.0439 -6.7805 -1.6372 20 1 -3.6553 -7.3078 -0.7660 21 6 -5.5830 -6.8549 -1.6513 22 6 -5.9136 -7.6292 -2.9505 23 6 -4.5805 -8.3659 -3.2376 24 8 -3.5747 -7.4087 -2.8419 25 6 0.3737 -2.5828 -1.2578 26 1 -0.4850 0.8400 -0.0004 27 1 2.8873 -3.5918 0.8784 28 1 2.8560 -3.6183 -0.9010 29 1 0.8508 -5.0231 0.9223 30 1 2.1898 -5.8163 0.0574 31 1 -0.0140 -5.9945 -1.1526 32 1 1.2379 -5.1585 -2.1047 33 1 -4.0575 -4.8155 -0.7548 34 1 -3.8948 -4.8242 -2.5273 35 1 -5.9467 -7.3993 -0.7797 36 1 -6.0132 -5.8538 -1.6814 37 1 -6.7230 -8.3400 -2.7844 38 1 -6.1608 -6.9426 -3.7602 39 1 -4.5056 -9.2720 -2.6363 40 1 -4.4932 -8.6021 -4.2981 41 1 0.9890 -2.4384 -2.1459 42 1 -0.3992 -1.8154 -1.2176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849420364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = -136.129266 kcal Electronic energy + Delta-G solvation = -23043.975529 eV Core-core repulsion = 19602.686649 eV Total energy + Delta-G solvation = -3441.288880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09410 -39.39357 -37.40294 -35.52678 -33.33901 -32.44195 -31.80954 -30.82164 -29.69983 -26.04550 -25.03058 -24.27748 -22.31806 -21.77369 -21.18941 -20.49765 -18.83749 -17.37109 -16.94458 -16.53545 -16.14542 -16.04466 -15.51167 -15.14004 -14.52965 -13.93160 -13.88274 -13.65100 -13.43568 -13.22247 -12.70564 -12.56342 -12.12678 -12.09550 -11.91366 -11.81604 -11.65605 -11.44164 -11.00240 -10.97113 -10.87722 -10.47273 -10.37178 -10.23692 -10.17888 -9.86964 -9.86016 -9.69901 -9.09918 -8.96809 -8.43204 -7.77002 -5.99043 -4.07798 2.74783 3.31499 3.39633 3.42847 3.55472 3.64950 4.25486 4.30383 4.44324 4.59706 4.67794 4.92751 5.02146 5.14902 5.29338 5.31126 5.39614 5.48575 5.50425 5.53400 5.61006 5.64141 5.73052 5.77358 5.84366 6.12729 6.28579 6.37864 6.54700 6.67938 6.70844 6.79140 6.92022 7.00039 7.19224 7.28907 7.66135 7.87588 8.01448 8.25952 8.39451 8.95642 9.06529 9.57815 11.06354 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.003730 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.698790 B = 7504.718924 C = 8185.141239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.114 3.886 14 N -0.586 5.586 15 C 0.640 3.360 16 O -0.571 6.571 17 O -0.371 6.371 18 C 0.089 3.911 19 C 0.079 3.921 20 H 0.080 0.920 21 C -0.149 4.149 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.363 6.363 25 C 0.126 3.874 26 H 0.263 0.737 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -16.731 -3.893 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.326 5.326 15 C 0.393 3.607 16 O -0.460 6.460 17 O -0.286 6.286 18 C 0.014 3.986 19 C 0.021 3.979 20 H 0.098 0.902 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.282 6.282 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.199 -16.266 -4.030 19.117 hybrid contribution 0.148 0.904 0.113 0.923 sum -9.051 -15.362 -3.918 18.256 Atomic orbital electron populations 1.69904 1.05755 1.26770 1.49347 1.25080 0.94895 0.99338 0.94821 0.86518 0.80045 0.83725 0.77615 1.19765 1.20965 1.21025 1.21123 0.92989 0.90009 1.51697 0.92173 1.19085 0.92660 0.92433 0.93820 0.95152 1.21636 0.98519 0.94091 1.00637 1.21954 0.98596 0.98999 0.97624 1.21597 0.93429 0.87725 0.98153 1.47532 1.01612 1.09837 1.73571 1.18175 0.83942 0.81267 0.77270 1.90982 1.61302 1.37431 1.56295 1.86223 1.23779 1.31365 1.87192 1.23031 0.77515 0.95127 1.02931 1.22816 0.93176 0.92590 0.89342 0.90239 1.22923 0.94440 1.02439 0.98920 1.23143 0.98501 0.99813 0.97847 1.23570 0.86541 0.92285 1.00991 1.89017 1.42866 1.54577 1.41769 1.22497 0.98307 0.79666 0.98816 0.92682 0.92956 0.93088 0.92191 0.92129 0.90338 0.92095 0.90134 0.90819 0.89893 0.89757 0.90059 0.90269 0.92146 0.88925 0.93529 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 11.41 55.43 0.63 -25.19 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 0.98 2.26 -91.42 -0.21 0.78 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.26 5.10 -26.69 -0.14 -2.40 16 12 C -0.13 -2.29 6.08 -26.62 -0.16 -2.45 16 13 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 14 N -0.59 -12.80 2.97 -178.30 -0.53 -13.33 16 15 C 0.64 14.31 8.43 54.06 0.46 14.77 16 16 O -0.57 -14.64 15.54 -19.27 -0.30 -14.94 16 17 O -0.37 -6.93 8.86 -42.16 -0.37 -7.31 16 18 C 0.09 1.34 4.92 37.16 0.18 1.53 16 19 C 0.08 0.92 3.72 -26.16 -0.10 0.82 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.24 6.64 -25.20 -0.17 -1.41 16 22 C -0.16 -1.13 7.15 -24.72 -0.18 -1.31 16 23 C 0.04 0.37 7.72 38.21 0.29 0.67 16 24 O -0.36 -4.77 11.18 -35.99 -0.40 -5.17 16 25 C 0.13 3.14 5.43 -3.49 -0.02 3.13 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.27 6.93 -51.93 -0.36 0.91 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 34 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.12 3.56 5.15 -51.93 -0.27 3.30 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -32.46 336.52 -8.27 -40.74 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.91 Total: 0.55 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.44 Total: 3.29 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.10 Total: -38.52 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.08 Total: -27.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.46 -8.27 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849420364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.391 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds