Wall clock time and date at job start Tue Mar 31 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47636 * 2 1 4 4 C 1.52997 * 109.47374 * 120.00560 * 2 1 3 5 5 C 1.52997 * 109.47497 * 59.42082 * 4 2 1 6 6 H 1.09007 * 109.46931 * 299.54953 * 5 4 2 7 7 C 1.50700 * 109.47433 * 179.55274 * 5 4 2 8 8 N 1.34774 * 120.00017 * 73.54368 * 7 5 4 9 9 O 1.21277 * 119.99707 * 253.27305 * 7 5 4 10 10 C 1.50702 * 109.47014 * 59.54639 * 5 4 2 11 11 O 1.20826 * 119.99789 * 0.02562 * 10 5 4 12 12 O 1.34229 * 120.00076 * 179.97438 * 10 5 4 13 13 C 1.45200 * 116.99897 * 180.02562 * 12 10 5 14 14 C 1.53002 * 109.46798 * 180.02562 * 13 12 10 15 15 C 1.50691 * 115.55353 * 66.43376 * 14 13 12 16 16 H 1.08004 * 120.00035 * 264.26842 * 15 14 13 17 17 C 1.37879 * 120.00444 * 84.26793 * 15 14 13 18 18 N 1.31515 * 119.99794 * 1.82210 * 17 15 14 19 19 Si 1.86802 * 120.00413 * 181.83147 * 17 15 14 20 20 H 1.48494 * 109.47193 * 59.99480 * 19 17 15 21 21 H 1.48502 * 109.47108 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46705 * 299.99695 * 19 17 15 23 23 C 1.53004 * 117.49910 * 280.75965 * 14 13 12 24 24 C 1.53004 * 117.49371 * 212.10180 * 14 13 12 25 25 H 1.09003 * 109.46470 * 298.18916 * 1 2 3 26 26 H 1.09001 * 109.47118 * 58.17963 * 1 2 3 27 27 H 1.08990 * 109.47272 * 178.18346 * 1 2 3 28 28 H 1.09006 * 109.46816 * 239.99908 * 2 1 3 29 29 H 1.08991 * 109.47658 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47288 * 300.00536 * 3 2 1 31 31 H 1.09001 * 109.46888 * 59.99667 * 3 2 1 32 32 H 1.09001 * 109.46799 * 299.42374 * 4 2 1 33 33 H 1.08995 * 109.47198 * 179.42843 * 4 2 1 34 34 H 0.96998 * 120.00061 * 4.04852 * 8 7 5 35 35 H 0.96998 * 119.99615 * 184.03573 * 8 7 5 36 36 H 1.09001 * 109.46708 * 299.99815 * 13 12 10 37 37 H 1.08994 * 109.47384 * 60.00516 * 13 12 10 38 38 H 0.97000 * 120.00661 * 180.02562 * 18 17 15 39 39 H 1.09008 * 117.49278 * 0.02562 * 23 14 13 40 40 H 1.08994 * 117.50083 * 145.02142 * 23 14 13 41 41 H 1.09003 * 117.49446 * 214.97602 * 24 14 13 42 42 H 1.08994 * 117.49879 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5183 -2.1596 1.2564 6 1 0.4283 -2.1506 1.2697 7 6 2.0297 -2.8734 2.4812 8 7 1.5132 -2.5872 3.6927 9 8 2.9025 -3.7088 2.3759 10 6 1.9996 -2.8748 0.0203 11 8 2.6897 -2.2939 -0.7836 12 8 1.6627 -4.1575 -0.1869 13 6 2.1624 -4.7828 -1.3984 14 6 1.6780 -6.2327 -1.4610 15 6 0.1912 -6.4148 -1.6256 16 1 -0.4320 -6.5788 -0.7589 17 6 -0.3736 -6.3722 -2.8827 18 7 0.3895 -6.2085 -3.9412 19 14 -2.2227 -6.5468 -3.0824 20 1 -2.9056 -5.4537 -2.3450 21 1 -2.5748 -6.4669 -4.5229 22 1 -2.6576 -7.8582 -2.5380 23 6 2.4267 -7.2648 -0.6153 24 6 2.5941 -7.2550 -2.1369 25 1 -0.3632 0.4855 0.9058 26 1 -0.3633 0.5418 -0.8732 27 1 -0.3633 -1.0270 -0.0326 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6852 -0.2016 2.1391 33 1 3.1300 -0.7302 1.2440 34 1 0.7727 -1.9655 3.7697 35 1 1.8820 -3.0032 4.4876 36 1 1.7923 -4.2386 -2.2673 37 1 3.2521 -4.7633 -1.3945 38 1 -0.0078 -6.1781 -4.8256 39 1 3.2642 -6.9107 -0.0141 40 1 1.8440 -8.0757 -0.1784 41 1 2.1212 -8.0594 -2.7003 42 1 3.5415 -6.8944 -2.5373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849805476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:53 Heat of formation + Delta-G solvation = -118.764871 kcal Electronic energy + Delta-G solvation = -23401.275079 eV Core-core repulsion = 19960.739176 eV Total energy + Delta-G solvation = -3440.535903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60769 -38.88095 -37.16397 -36.18961 -35.01654 -33.74955 -31.92236 -31.37185 -27.21830 -27.02353 -25.45683 -24.78056 -22.06890 -21.03942 -20.27961 -19.51633 -19.16112 -17.86548 -17.24462 -16.76776 -16.22554 -15.42543 -15.23134 -15.14110 -14.56630 -14.44723 -14.11374 -13.77739 -13.56255 -13.03149 -12.77197 -12.43093 -12.25483 -12.04482 -11.93494 -11.67746 -11.54553 -11.01904 -10.94111 -10.85603 -10.81913 -10.69103 -10.50199 -10.17078 -9.96130 -9.82501 -9.77702 -9.65201 -9.40355 -8.83561 -8.41425 -8.13055 -6.03146 -4.09242 2.55631 2.59967 3.22598 3.30714 3.35357 3.37748 3.56140 4.40427 4.55078 4.69072 4.82120 4.98483 5.05904 5.23939 5.26646 5.31233 5.49351 5.59123 5.63102 5.71671 5.79063 5.84929 5.96090 6.07320 6.17156 6.30398 6.34027 6.38722 6.50490 6.61792 6.66849 6.74999 6.84886 7.11777 7.15623 7.31878 7.43833 7.56983 7.88584 8.16245 8.39570 8.47811 8.92214 9.56095 11.05845 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.005457 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.571908 B = 5129.826076 C = 5805.403205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.088 4.088 5 C -0.110 4.110 6 H 0.130 0.870 7 C 0.532 3.468 8 N -0.853 5.853 9 O -0.520 6.520 10 C 0.478 3.522 11 O -0.510 6.510 12 O -0.327 6.327 13 C 0.119 3.881 14 C 0.034 3.966 15 C -0.487 4.487 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.203 4.203 24 C -0.141 4.141 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 12.909 12.207 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.198 4.198 4 C -0.126 4.126 5 C -0.132 4.132 6 H 0.148 0.852 7 C 0.315 3.685 8 N -0.418 5.418 9 O -0.394 6.394 10 C 0.320 3.680 11 O -0.400 6.400 12 O -0.241 6.241 13 C 0.046 3.954 14 C 0.034 3.966 15 C -0.525 4.525 16 H 0.079 0.921 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.241 4.241 24 C -0.179 4.179 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.230 0.770 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.700 12.517 11.447 16.976 hybrid contribution -1.235 0.086 0.065 1.240 sum -0.535 12.603 11.512 17.077 Atomic orbital electron populations 1.21948 0.95483 1.01914 1.01675 1.21462 0.95617 0.96446 0.99824 1.21764 1.01026 0.95699 1.01329 1.21454 1.02000 0.89900 0.99268 1.21340 1.04596 0.96574 0.90686 0.85199 1.19965 0.82092 0.81970 0.84457 1.43727 1.39250 1.50350 1.08468 1.90837 1.30810 1.31825 1.85878 1.22471 0.77517 0.81862 0.86183 1.90540 1.35908 1.67154 1.46420 1.86518 1.68637 1.23885 1.45086 1.22885 0.95221 0.94673 0.82627 1.18765 0.93906 0.84761 0.99168 1.20354 0.89780 1.49852 0.92529 0.92075 1.25017 0.97907 0.94666 0.95897 1.69990 1.34878 1.48918 0.98123 0.86661 0.85655 0.78767 0.76943 1.20193 1.21259 1.20150 1.22983 1.02965 1.04412 0.93701 1.22526 0.99222 1.03171 0.92961 0.92843 0.92449 0.92550 0.87760 0.92706 0.92673 0.93167 0.90567 0.90505 0.77044 0.76531 0.90912 0.94135 0.92894 0.91382 0.90233 0.89307 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.77 37.16 0.33 -1.30 16 2 C -0.12 -1.38 2.65 -90.62 -0.24 -1.62 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.09 -1.00 3.91 -26.73 -0.10 -1.10 16 5 C -0.11 -1.52 2.32 -92.92 -0.22 -1.74 16 6 H 0.13 1.49 6.48 -51.92 -0.34 1.16 16 7 C 0.53 7.54 7.25 -10.99 -0.08 7.46 16 8 N -0.85 -7.26 8.87 31.22 0.28 -6.98 16 9 O -0.52 -10.07 16.76 1.55 0.03 -10.04 16 10 C 0.48 9.44 6.34 36.01 0.23 9.66 16 11 O -0.51 -10.78 13.38 -18.75 -0.25 -11.03 16 12 O -0.33 -7.59 9.87 -42.14 -0.42 -8.00 16 13 C 0.12 2.97 5.29 37.16 0.20 3.16 16 14 C 0.03 0.90 1.65 -155.66 -0.26 0.64 16 15 C -0.49 -13.57 8.79 -34.44 -0.30 -13.88 16 16 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 18 N -0.88 -25.14 12.75 55.43 0.71 -24.44 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.20 -4.78 9.96 -26.69 -0.27 -5.05 16 24 C -0.14 -3.45 9.25 -26.69 -0.25 -3.70 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 28 H 0.10 1.63 5.49 -51.93 -0.29 1.34 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.98 8.11 -51.93 -0.42 0.55 16 34 H 0.40 2.00 8.83 -40.82 -0.36 1.64 16 35 H 0.40 2.97 8.93 -40.82 -0.36 2.60 16 36 H 0.07 1.94 8.13 -51.93 -0.42 1.52 16 37 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.09 2.26 8.14 -51.93 -0.42 1.84 16 42 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -33.69 351.42 -6.82 -40.51 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.72 Total: 5.27 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.72 Total: -6.72 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.98 Total: -31.42 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.64 Total: -29.08 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.69 -6.82 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849805476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.252 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds