Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 110.43534 * 2 1 4 4 O 1.45208 * 109.46666 * 57.46062 * 3 2 1 5 5 C 1.34232 * 116.99618 * 180.02562 * 4 3 2 6 6 O 1.20826 * 120.00236 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00079 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47466 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47282 * 89.99593 * 15 13 11 17 17 H 1.48498 * 109.47211 * 210.00040 * 15 13 11 18 18 H 1.48506 * 109.46856 * 330.00220 * 15 13 11 19 19 C 1.54624 * 110.48833 * 237.46245 * 2 1 3 20 20 C 1.54478 * 101.76676 * 216.38971 * 19 2 1 21 21 N 1.46767 * 105.47428 * 25.41530 * 20 19 2 22 22 C 1.34423 * 111.29584 * 342.97970 * 21 20 19 23 23 O 1.21275 * 124.93721 * 180.45009 * 22 21 20 24 24 H 1.08996 * 109.47304 * 60.70019 * 1 2 3 25 25 H 1.09004 * 109.47134 * 180.70080 * 1 2 3 26 26 H 1.09010 * 109.46971 * 300.69726 * 1 2 3 27 27 H 1.08998 * 109.46939 * 297.46342 * 3 2 1 28 28 H 1.08996 * 109.47314 * 177.45523 * 3 2 1 29 29 H 1.09002 * 109.47120 * 59.99588 * 7 5 4 30 30 H 1.08998 * 109.46862 * 300.00390 * 7 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 8 7 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 8 7 5 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 35 35 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 36 36 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 37 37 H 0.97000 * 119.99425 * 180.02562 * 14 13 11 38 38 H 1.09001 * 110.96895 * 334.50674 * 19 2 1 39 39 H 1.09001 * 110.97062 * 98.23221 * 19 2 1 40 40 H 1.09005 * 110.25048 * 144.41251 * 20 19 2 41 41 H 1.08997 * 110.24704 * 266.41669 * 20 19 2 42 42 H 0.96998 * 124.35122 * 162.98241 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 8 1.5431 2.1443 1.1542 5 6 1.9186 3.4245 1.3022 6 8 2.6586 3.9343 0.4944 7 6 1.4183 4.2256 2.4764 8 6 1.9919 5.6424 2.4089 9 6 1.4844 6.4554 3.6015 10 6 2.0576 7.8724 3.5336 11 6 1.5573 8.6735 4.7078 12 1 0.8961 8.2177 5.4301 13 6 1.9434 9.9883 4.8602 14 7 2.7488 10.5431 3.9809 15 14 1.3237 10.9811 6.3161 16 1 2.2662 10.8320 7.4541 17 1 1.2305 12.4133 5.9350 18 1 -0.0182 10.4871 6.7169 19 6 2.0711 -0.7790 -1.2211 20 6 3.3218 -1.4650 -0.6281 21 7 3.0602 -1.5793 0.8116 22 6 2.0623 -0.7633 1.1927 23 8 1.6493 -0.6543 2.3278 24 1 -0.3634 0.5029 -0.8961 25 1 -0.3633 -1.0276 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 1.7469 1.9397 -0.9118 28 1 3.1530 1.4158 0.0456 29 1 1.7366 3.7489 3.4035 30 1 0.3297 4.2722 2.4470 31 1 1.6740 6.1193 1.4818 32 1 3.0805 5.5953 2.4386 33 1 0.3958 6.5025 3.5722 34 1 1.8027 5.9784 4.5283 35 1 3.1462 7.8257 3.5626 36 1 1.7390 8.3493 2.6066 37 1 3.0208 11.4680 4.0883 38 1 1.3471 -1.5178 -1.5646 39 1 2.3442 -0.0989 -2.0279 40 1 3.4536 -2.4539 -1.0671 41 1 4.2065 -0.8528 -0.8031 42 1 3.5450 -2.1680 1.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853181557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -150.653332 kcal Electronic energy + Delta-G solvation = -21887.473491 eV Core-core repulsion = 18445.554801 eV Total energy + Delta-G solvation = -3441.918690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24747 -40.14938 -36.99477 -36.53127 -34.93516 -33.87565 -32.64214 -29.99010 -29.25229 -27.51372 -25.80634 -24.88367 -22.66921 -22.41329 -20.49673 -19.98089 -19.54510 -17.74087 -17.45874 -16.91782 -16.72935 -16.14689 -15.57504 -15.34421 -14.77701 -14.41413 -14.32800 -14.24078 -13.90804 -13.52119 -13.01804 -12.87282 -12.61775 -12.51449 -12.22142 -12.17226 -11.73980 -11.65070 -11.50447 -11.43714 -10.98021 -10.77741 -10.55715 -10.52801 -10.42627 -10.32464 -9.98708 -9.61360 -9.52703 -9.25592 -8.99405 -8.29302 -5.94293 -3.96601 2.25070 2.32578 2.60506 2.92062 3.35727 3.41613 3.45232 3.78549 3.90814 4.12637 4.42006 4.49835 4.50760 4.74951 4.86721 4.96746 5.06935 5.14420 5.18276 5.31294 5.33672 5.34685 5.41339 5.48173 5.48873 5.79492 5.90823 6.10534 6.23822 6.36256 6.43854 6.51975 6.60335 6.80886 6.98759 7.19795 7.74853 7.84943 7.89965 7.92071 8.06889 8.48885 9.11010 9.67106 11.17114 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041115 B = 0.002417 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.860920 B =11583.073858 C =11772.247376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C 0.086 3.914 4 O -0.349 6.349 5 C 0.461 3.539 6 O -0.508 6.508 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.125 4.125 20 C 0.098 3.902 21 N -0.737 5.737 22 C 0.527 3.473 23 O -0.509 6.509 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -27.721 -13.346 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 C 0.011 3.989 4 O -0.266 6.266 5 C 0.305 3.695 6 O -0.396 6.396 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.026 4.026 21 N -0.394 5.394 22 C 0.312 3.688 23 O -0.382 6.382 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.165 -27.287 -13.116 30.298 hybrid contribution 0.206 0.297 0.781 0.860 sum -0.959 -26.990 -12.335 29.691 Atomic orbital electron populations 1.21669 0.90612 1.02661 1.03840 1.21460 0.99302 0.93997 0.95201 1.22774 0.98623 0.89155 0.88325 1.86620 1.67978 1.25907 1.46065 1.24248 0.78024 0.79963 0.87282 1.90662 1.34251 1.70774 1.43884 1.21610 1.03225 0.95857 0.94235 1.21573 1.01042 0.91018 1.00887 1.21651 0.99803 0.98201 0.95134 1.19097 0.96242 0.89305 0.97060 1.21285 1.28845 0.96330 1.09348 0.92679 1.25043 0.95255 0.97939 0.96362 1.69979 1.34742 1.13376 1.35460 0.86600 0.79241 0.79326 0.82861 1.20699 1.21268 1.19885 1.22753 0.97253 0.99697 0.96581 1.22100 0.98233 1.01831 0.80456 1.46223 1.37911 1.44614 1.10662 1.20576 0.79480 0.79337 0.89452 1.90775 1.60866 1.65204 1.21361 0.91353 0.92080 0.90311 0.89826 0.91042 0.87815 0.87804 0.91560 0.91620 0.93172 0.93183 0.96568 0.96545 0.93057 0.88784 0.88522 0.89844 0.90808 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.26 37.15 0.31 -0.72 16 2 C -0.10 -0.78 0.72 -154.52 -0.11 -0.89 16 3 C 0.09 0.88 4.30 37.16 0.16 1.04 16 4 O -0.35 -4.70 9.31 -39.26 -0.37 -5.06 16 5 C 0.46 6.96 7.96 36.00 0.29 7.25 16 6 O -0.51 -8.91 15.73 -18.75 -0.29 -9.21 16 7 C -0.11 -1.62 5.81 -27.89 -0.16 -1.78 16 8 C -0.11 -1.93 4.50 -26.73 -0.12 -2.05 16 9 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.13 -0.51 6.23 -25.10 -0.16 -0.67 16 20 C 0.10 0.38 7.78 -3.12 -0.02 0.35 16 21 N -0.74 -5.14 6.24 -59.20 -0.37 -5.51 16 22 C 0.53 5.64 7.00 -10.86 -0.08 5.56 16 23 O -0.51 -7.76 17.87 5.56 0.10 -7.66 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.80 7.66 -51.92 -0.40 0.41 16 27 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.09 0.26 7.91 -51.93 -0.41 -0.15 16 39 H 0.10 0.26 7.90 -51.93 -0.41 -0.15 16 40 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.41 2.33 8.96 -40.82 -0.37 1.97 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -36.29 352.92 -7.52 -43.81 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.04 Total: -4.00 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.58 Total: -7.84 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.37 Total: -32.44 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.56 Total: -21.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.29 -7.52 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853181557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.839 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds