Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.43431 * 2 1 4 4 O 1.45205 * 109.47038 * 300.70168 * 3 2 1 5 5 C 1.34225 * 116.99943 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00047 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99990 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.47184 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47188 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00270 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46778 * 60.00425 * 15 13 11 17 17 H 1.48496 * 109.47592 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47134 * 300.00732 * 15 13 11 19 19 C 1.54632 * 110.48880 * 122.54132 * 2 1 3 20 20 C 1.54476 * 101.76417 * 94.01006 * 19 2 1 21 21 N 1.46768 * 105.47562 * 25.41759 * 20 19 2 22 22 C 1.34652 * 111.33225 * 342.86594 * 21 20 19 23 23 O 1.21280 * 125.07114 * 180.50100 * 22 21 20 24 24 H 1.08992 * 109.47064 * 59.29594 * 1 2 3 25 25 H 1.09000 * 109.46972 * 179.30126 * 1 2 3 26 26 H 1.09003 * 109.46838 * 299.29578 * 1 2 3 27 27 H 1.09004 * 109.46731 * 180.70396 * 3 2 1 28 28 H 1.08993 * 109.47109 * 60.70257 * 3 2 1 29 29 H 1.09001 * 109.46665 * 60.00348 * 7 5 4 30 30 H 1.08993 * 109.47304 * 299.99904 * 7 5 4 31 31 H 1.09001 * 109.46801 * 300.00442 * 8 7 5 32 32 H 1.09001 * 109.46998 * 60.00038 * 8 7 5 33 33 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 35 35 H 1.09000 * 109.47380 * 300.00763 * 10 9 8 36 36 H 1.09001 * 109.46997 * 60.00426 * 10 9 8 37 37 H 0.97007 * 119.99867 * 179.97438 * 14 13 11 38 38 H 1.08997 * 110.97029 * 212.12932 * 19 2 1 39 39 H 1.09001 * 110.96386 * 335.89716 * 19 2 1 40 40 H 1.08999 * 110.24563 * 144.41854 * 20 19 2 41 41 H 1.09002 * 110.24854 * 266.32859 * 20 19 2 42 42 H 0.96998 * 124.34894 * 162.97762 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 8 1.5782 2.1313 -1.1771 5 6 1.9582 3.4097 -1.3281 6 8 2.6736 3.9286 -0.5042 7 6 1.4935 4.1975 -2.5257 8 6 2.0641 5.6155 -2.4562 9 6 1.5918 6.4155 -3.6718 10 6 2.1618 7.8336 -3.6019 11 6 1.6971 8.6214 -4.7996 12 1 1.0587 8.1573 -5.5366 13 6 2.0862 9.9351 -4.9538 14 7 2.8632 10.5005 -4.0560 15 14 1.5096 10.9119 -6.4380 16 1 0.0258 10.9742 -6.4435 17 1 2.0629 12.2883 -6.3703 18 1 1.9818 10.2496 -7.6804 19 6 2.0713 -0.7792 1.2211 20 6 2.2806 -2.1897 0.6271 21 7 2.4803 -1.9829 -0.8121 22 6 2.0594 -0.7623 -1.1946 23 8 2.0998 -0.3351 -2.3290 24 1 -0.3633 0.5247 -0.8835 25 1 -0.3633 -1.0276 -0.0125 26 1 -0.3633 0.5029 0.8963 27 1 3.1540 1.4153 -0.0126 28 1 1.7199 1.9497 0.8962 29 1 0.4045 4.2443 -2.5295 30 1 1.8395 3.7106 -3.4374 31 1 1.7178 6.1022 -1.5444 32 1 3.1531 5.5691 -2.4521 33 1 1.9377 5.9289 -4.5837 34 1 0.5028 6.4619 -3.6753 35 1 1.8156 8.3199 -2.6899 36 1 3.2509 7.7876 -3.5981 37 1 3.1373 11.4247 -4.1647 38 1 3.0152 -0.3571 1.5660 39 1 1.3375 -0.8002 2.0268 40 1 3.1616 -2.6572 1.0668 41 1 1.3996 -2.8073 0.8021 42 1 2.8645 -2.6416 -1.4116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853181558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -150.172562 kcal Electronic energy + Delta-G solvation = -21867.735410 eV Core-core repulsion = 18425.837568 eV Total energy + Delta-G solvation = -3441.897843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19556 -40.09016 -36.91770 -36.56088 -34.89567 -33.78928 -32.61459 -29.94874 -29.24486 -27.54793 -25.86063 -24.81443 -22.67343 -22.35367 -20.41284 -19.94259 -19.55786 -17.73285 -17.33588 -16.85425 -16.42982 -16.12968 -16.04734 -15.13464 -14.80478 -14.43655 -14.39924 -14.13511 -13.69309 -13.50704 -12.96330 -12.78499 -12.61570 -12.59409 -12.41404 -12.13060 -11.71965 -11.62070 -11.48152 -11.37856 -10.94653 -10.71889 -10.53729 -10.50881 -10.39689 -10.26291 -9.95162 -9.58543 -9.52215 -9.23173 -8.98444 -8.27412 -5.92485 -3.94850 2.25555 2.40575 2.69828 2.91653 3.38240 3.42198 3.44908 3.80826 3.83818 4.17767 4.42802 4.51742 4.53247 4.72551 4.94046 4.96703 5.05830 5.17660 5.19393 5.31842 5.35937 5.39047 5.42253 5.43049 5.45909 5.82455 5.84721 6.14318 6.27838 6.38078 6.49912 6.56299 6.59485 6.84078 7.01995 7.22306 7.76559 7.92256 7.92617 7.93773 8.08771 8.50698 9.12552 9.68636 11.18843 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045935 B = 0.002381 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.409420 B =11755.380823 C =11980.924777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C 0.086 3.914 4 O -0.343 6.343 5 C 0.461 3.539 6 O -0.511 6.511 7 C -0.111 4.111 8 C -0.107 4.107 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.126 4.126 20 C 0.104 3.896 21 N -0.739 5.739 22 C 0.525 3.475 23 O -0.503 6.503 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -29.091 13.469 32.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 C 0.012 3.988 4 O -0.260 6.260 5 C 0.305 3.695 6 O -0.399 6.399 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.164 4.164 20 C -0.021 4.021 21 N -0.396 5.396 22 C 0.309 3.691 23 O -0.376 6.376 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.231 -28.467 13.240 31.562 hybrid contribution 0.069 0.187 -0.789 0.814 sum -3.162 -28.280 12.451 31.061 Atomic orbital electron populations 1.21684 0.90485 1.02624 1.04034 1.21497 0.99057 0.94168 0.95244 1.22763 0.99009 0.89518 0.87551 1.86619 1.68865 1.26080 1.44406 1.24210 0.77515 0.79949 0.87820 1.90657 1.35051 1.70272 1.43880 1.21592 1.03355 0.96019 0.93916 1.21568 1.01134 0.91086 1.00723 1.21648 0.99868 0.98282 0.94974 1.19093 0.96268 0.89322 0.97002 1.21248 1.30379 0.96509 1.07714 0.92737 1.25043 0.95260 0.97892 0.96400 1.69970 1.35542 1.13178 1.34863 0.86659 0.78982 0.79058 0.83286 1.20273 1.21349 1.20271 1.22748 1.03118 0.93944 0.96579 1.22026 1.02238 0.97359 0.80445 1.46272 1.65277 1.17438 1.10631 1.20651 0.76878 0.81997 0.89528 1.90807 1.54240 1.71129 1.21412 0.90505 0.92006 0.91043 0.91131 0.90120 0.87953 0.87793 0.91613 0.91616 0.93188 0.93215 0.96561 0.96564 0.93010 0.89356 0.88297 0.89990 0.90832 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.37 37.16 0.31 -0.62 16 2 C -0.10 -0.77 0.72 -154.52 -0.11 -0.88 16 3 C 0.09 0.93 4.29 37.16 0.16 1.09 16 4 O -0.34 -4.80 8.63 -44.32 -0.38 -5.18 16 5 C 0.46 7.24 7.96 36.00 0.29 7.52 16 6 O -0.51 -9.30 15.73 -18.75 -0.29 -9.59 16 7 C -0.11 -1.66 5.81 -27.88 -0.16 -1.82 16 8 C -0.11 -1.98 4.50 -26.73 -0.12 -2.10 16 9 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 10 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 11 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 15 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.13 -0.51 6.23 -25.10 -0.16 -0.67 16 20 C 0.10 0.35 7.78 -3.12 -0.02 0.32 16 21 N -0.74 -4.88 6.25 -59.14 -0.37 -5.25 16 22 C 0.52 5.56 7.19 -10.76 -0.08 5.48 16 23 O -0.50 -7.76 17.05 -7.95 -0.14 -7.89 16 24 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 0.33 7.91 -51.93 -0.41 -0.08 16 39 H 0.10 0.21 7.90 -51.93 -0.41 -0.20 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.41 2.18 8.96 -40.82 -0.37 1.82 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -36.64 351.77 -7.79 -44.43 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -7.04 Total: -4.21 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.58 Total: -7.72 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.37 Total: -32.32 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.81 Total: -22.67 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.64 -7.79 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853181558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.740 kcal (2) G-P(sol) polarization free energy of solvation -36.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds