Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46824 * 2 1 4 4 C 1.52997 * 109.47142 * 240.00136 * 2 1 3 5 5 O 1.45196 * 109.47183 * 119.99876 * 2 1 3 6 6 C 1.34547 * 116.99935 * 60.00382 * 5 2 1 7 7 O 1.21249 * 119.99528 * 359.97438 * 6 5 2 8 8 C 1.49436 * 119.99646 * 179.97438 * 6 5 2 9 9 O 1.21344 * 120.00330 * 6.85474 * 8 6 5 10 10 N 1.34778 * 119.99473 * 186.85508 * 8 6 5 11 11 C 1.46933 * 120.63186 * 6.83592 * 10 8 6 12 12 C 1.53193 * 108.88862 * 233.67994 * 11 10 8 13 13 C 1.53041 * 109.31294 * 305.29266 * 12 11 10 14 14 C 1.53029 * 109.53872 * 61.36977 * 13 12 11 15 15 H 1.08998 * 109.49919 * 58.58481 * 14 13 12 16 16 C 1.50698 * 109.49807 * 178.68486 * 14 13 12 17 17 H 1.07998 * 120.00413 * 25.71218 * 16 14 13 18 18 C 1.37879 * 120.00054 * 205.72313 * 16 14 13 19 19 N 1.31512 * 120.00392 * 175.47972 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 355.47106 * 18 16 14 21 21 H 1.48506 * 109.46977 * 95.06687 * 20 18 16 22 22 H 1.48500 * 109.47329 * 215.06582 * 20 18 16 23 23 H 1.48496 * 109.47427 * 335.06623 * 20 18 16 24 24 C 1.47205 * 120.81369 * 186.97845 * 10 8 6 25 25 H 1.08992 * 109.47204 * 299.99761 * 1 2 3 26 26 H 1.08994 * 109.47119 * 60.00371 * 1 2 3 27 27 H 1.08998 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46457 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46973 * 299.99543 * 3 2 1 30 30 H 1.08992 * 109.47034 * 60.00135 * 3 2 1 31 31 H 1.09004 * 109.47226 * 300.00182 * 4 2 1 32 32 H 1.09006 * 109.47178 * 59.99740 * 4 2 1 33 33 H 1.08998 * 109.47727 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.58805 * 113.82056 * 11 10 8 35 35 H 1.08996 * 109.58214 * 353.53787 * 11 10 8 36 36 H 1.08999 * 109.49776 * 65.24571 * 12 11 10 37 37 H 1.09004 * 109.49202 * 185.34468 * 12 11 10 38 38 H 1.09006 * 109.45661 * 181.39203 * 13 12 11 39 39 H 1.09006 * 109.45606 * 301.35776 * 13 12 11 40 40 H 0.96996 * 120.00376 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.53032 * 6.53428 * 24 10 8 42 42 H 1.09004 * 109.67611 * 246.23122 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6526 -1.9714 1.3382 7 8 0.9528 -2.5073 0.5056 8 6 2.1137 -2.7402 2.5338 9 8 2.7080 -2.1736 3.4273 10 7 1.8694 -4.0628 2.6197 11 6 1.2859 -4.7916 1.4852 12 6 0.0386 -5.5403 1.9653 13 6 0.4081 -6.4281 3.1558 14 6 0.9203 -5.5566 4.3047 15 1 0.1511 -4.8379 4.5871 16 6 1.2535 -6.4287 5.4877 17 1 1.5191 -7.4647 5.3372 18 6 1.2190 -5.9041 6.7623 19 7 1.4224 -6.6852 7.8006 20 14 0.8837 -4.0839 7.0144 21 1 -0.5639 -3.8786 7.2743 22 1 1.6696 -3.5917 8.1743 23 1 1.2789 -3.3342 5.7950 24 6 2.1777 -4.8081 3.8512 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 2.0128 -5.5045 1.0960 35 1 1.0097 -4.0865 0.7012 36 1 -0.7224 -4.8217 2.2697 37 1 -0.3481 -6.1595 1.1558 38 1 -0.4724 -6.9807 3.4838 39 1 1.1869 -7.1300 2.8574 40 1 1.3985 -6.3161 8.6973 41 1 2.4895 -4.1122 4.6299 42 1 2.9781 -5.5222 3.6574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853816207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = -106.719089 kcal Electronic energy + Delta-G solvation = -23748.005642 eV Core-core repulsion = 20307.992084 eV Total energy + Delta-G solvation = -3440.013559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34346 -39.44216 -37.40150 -36.96877 -34.26044 -33.31943 -31.94224 -30.53973 -27.68255 -27.66428 -26.65418 -25.22685 -23.86877 -21.93464 -21.05701 -19.85346 -18.94749 -17.45452 -17.13223 -16.70239 -16.46924 -16.15354 -15.13199 -14.87274 -14.49313 -14.15601 -14.05397 -13.84922 -13.74821 -13.26479 -12.81995 -12.70092 -12.57063 -12.42811 -12.30876 -12.18444 -12.13402 -11.87629 -11.72564 -11.24567 -11.11497 -10.73980 -10.65700 -10.54180 -10.44949 -10.14510 -9.76642 -9.55726 -9.25691 -8.87532 -8.66270 -8.21973 -6.15500 -4.16879 1.21653 1.98525 3.17580 3.29225 3.40182 3.48445 3.64574 4.30607 4.39240 4.41945 4.47956 4.62163 5.15672 5.20399 5.26204 5.28360 5.41219 5.43482 5.45073 5.53154 5.55338 5.64536 5.73159 5.85106 5.96308 5.99486 6.00267 6.14460 6.19977 6.39693 6.47372 6.54958 6.58721 6.75209 6.78349 7.18495 7.29011 7.37460 7.63998 7.67425 8.14226 8.44152 8.89742 9.47201 10.96627 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.005027 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.767354 B = 5568.348927 C = 6210.362277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.321 6.321 6 C 0.468 3.532 7 O -0.475 6.475 8 C 0.516 3.484 9 O -0.502 6.502 10 N -0.567 5.567 11 C 0.049 3.951 12 C -0.131 4.131 13 C -0.105 4.105 14 C 0.009 3.991 15 H 0.033 0.967 16 C -0.515 4.515 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.863 3.137 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.249 1.249 24 C 0.104 3.896 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 12.025 -18.713 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.236 6.236 6 C 0.308 3.692 7 O -0.364 6.364 8 C 0.297 3.703 9 O -0.378 6.378 10 N -0.302 5.302 11 C -0.072 4.072 12 C -0.169 4.169 13 C -0.143 4.143 14 C -0.011 4.011 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.095 0.905 18 C -0.126 4.126 19 N -0.530 5.530 20 Si 0.689 3.311 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.173 1.173 24 C -0.015 4.015 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.915 12.203 -18.290 22.006 hybrid contribution -0.252 0.841 0.242 0.911 sum -1.167 13.044 -18.047 22.298 Atomic orbital electron populations 1.22510 0.93677 1.04946 1.03027 1.22377 0.94754 0.92602 0.82859 1.21852 1.02450 0.92258 1.03186 1.22506 1.01941 1.03102 0.96509 1.86737 1.68359 1.23710 1.44793 1.24004 0.77391 0.81483 0.86299 1.90309 1.35052 1.67563 1.43477 1.18866 0.82486 0.83307 0.85632 1.90793 1.39309 1.68488 1.39203 1.48533 1.58787 1.05534 1.17298 1.23119 0.95654 0.98442 0.89996 1.21912 0.96898 0.99034 0.99042 1.21553 1.00798 0.97641 0.94287 1.19448 0.92381 0.94734 0.94552 0.94911 1.20898 1.47815 0.97921 0.88680 0.90498 1.25056 0.93985 0.97579 0.96014 1.69894 1.48940 1.35504 0.98633 0.87114 0.78572 0.86277 0.79101 1.20481 1.21122 1.17307 1.23024 1.00999 0.94608 0.82912 0.91717 0.90781 0.89690 0.91268 0.90183 0.91226 0.89746 0.90768 0.91754 0.91840 0.84270 0.92233 0.91597 0.92089 0.92656 0.92456 0.89366 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 2 C 0.11 1.17 1.13 -90.62 -0.10 1.07 16 3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 4 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 5 O -0.32 -4.70 9.76 -45.07 -0.44 -5.14 16 6 C 0.47 7.37 7.22 35.40 0.26 7.62 16 7 O -0.48 -6.86 8.64 -19.07 -0.16 -7.03 16 8 C 0.52 9.85 7.75 -11.59 -0.09 9.76 16 9 O -0.50 -11.19 16.44 -7.52 -0.12 -11.31 16 10 N -0.57 -10.64 2.98 -173.05 -0.52 -11.16 16 11 C 0.05 0.76 6.26 -3.71 -0.02 0.73 16 12 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C -0.10 -1.99 5.15 -26.70 -0.14 -2.13 16 14 C 0.01 0.19 1.80 -91.66 -0.16 0.03 16 15 H 0.03 0.78 6.19 -51.93 -0.32 0.46 16 16 C -0.52 -13.93 8.88 -34.44 -0.31 -14.24 16 17 H 0.08 2.23 8.05 -52.49 -0.42 1.81 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 20 Si 0.86 21.72 26.29 -169.99 -4.47 17.25 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.25 -6.22 5.34 56.52 0.30 -5.92 16 24 C 0.10 2.24 5.34 -3.56 -0.02 2.22 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.98 5.88 -51.93 -0.31 0.68 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.91 5.88 -51.93 -0.31 0.60 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.14 2.02 3.79 -56.74 -0.21 1.80 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 2.11 4.69 -51.93 -0.24 1.87 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -30.95 326.93 -6.45 -37.40 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.54 Total: -0.04 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.11 Total: 1.19 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.26 Total: -37.25 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.73 Total: -23.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.47 Total: 17.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.95 -6.45 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853816207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.322 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds