Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46715 * 2 1 4 4 C 1.53000 * 109.47209 * 239.99805 * 2 1 3 5 5 O 1.45196 * 109.46904 * 119.99470 * 2 1 3 6 6 C 1.34541 * 116.99854 * 60.00591 * 5 2 1 7 7 O 1.21247 * 120.00072 * 359.97438 * 6 5 2 8 8 C 1.49437 * 120.00149 * 179.97438 * 6 5 2 9 9 O 1.21356 * 119.99670 * 353.38181 * 8 6 5 10 10 N 1.34767 * 120.00230 * 173.38105 * 8 6 5 11 11 C 1.46931 * 120.63173 * 353.07114 * 10 8 6 12 12 C 1.53189 * 108.77612 * 126.41281 * 11 10 8 13 13 C 1.53045 * 109.33732 * 54.62159 * 12 11 10 14 14 C 1.53039 * 109.53855 * 298.67843 * 13 12 11 15 15 H 1.09003 * 109.49834 * 301.35389 * 14 13 12 16 16 C 1.50699 * 109.49821 * 181.28613 * 14 13 12 17 17 H 1.08007 * 119.99980 * 0.06589 * 16 14 13 18 18 C 1.37874 * 120.00029 * 180.34351 * 16 14 13 19 19 N 1.31509 * 120.00156 * 359.72399 * 18 16 14 20 20 Si 1.86803 * 120.00028 * 179.72551 * 18 16 14 21 21 H 1.48500 * 109.46923 * 89.99534 * 20 18 16 22 22 H 1.48490 * 109.47160 * 209.99759 * 20 18 16 23 23 H 1.48508 * 109.46962 * 329.99997 * 20 18 16 24 24 C 1.46926 * 120.63416 * 173.09353 * 10 8 6 25 25 H 1.09002 * 109.47249 * 299.99991 * 1 2 3 26 26 H 1.09000 * 109.47184 * 60.00346 * 1 2 3 27 27 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46677 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47012 * 299.99759 * 3 2 1 30 30 H 1.08989 * 109.47454 * 59.99775 * 3 2 1 31 31 H 1.09004 * 109.46932 * 300.00248 * 4 2 1 32 32 H 1.09000 * 109.47171 * 59.99841 * 4 2 1 33 33 H 1.08994 * 109.47340 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.58453 * 246.20229 * 11 10 8 35 35 H 1.09001 * 109.58254 * 6.48167 * 11 10 8 36 36 H 1.08999 * 109.49796 * 174.58311 * 12 11 10 37 37 H 1.08997 * 109.50091 * 294.68587 * 12 11 10 38 38 H 1.08997 * 109.48234 * 178.64521 * 13 12 11 39 39 H 1.08994 * 109.43596 * 58.68599 * 13 12 11 40 40 H 0.96996 * 120.00414 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.59116 * 113.79203 * 24 10 8 42 42 H 1.09009 * 109.70088 * 353.44252 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6526 -1.9713 1.3383 7 8 0.9528 -2.5073 0.5058 8 6 2.1135 -2.7401 2.5340 9 8 2.9094 -2.2442 3.3043 10 7 1.6454 -3.9841 2.7568 11 6 0.5716 -4.5405 1.9224 12 6 1.0323 -5.8892 1.3607 13 6 1.4665 -6.7968 2.5139 14 6 2.6413 -6.1552 3.2558 15 1 3.4671 -5.9972 2.5620 16 6 3.0886 -7.0642 4.3714 17 1 2.5861 -8.0063 4.5347 18 6 4.1354 -6.6908 5.1872 19 7 4.7472 -5.5438 4.9884 20 14 4.6848 -7.8142 6.5749 21 1 5.7309 -8.7425 6.0756 22 1 5.2374 -6.9964 7.6844 23 1 3.5229 -8.5968 7.0677 24 6 2.1989 -4.8095 3.8389 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 -0.3242 -4.6832 2.5270 35 1 0.3539 -3.8559 1.1026 36 1 0.2105 -6.3574 0.8189 37 1 1.8728 -5.7337 0.6844 38 1 1.7721 -7.7656 2.1188 39 1 0.6326 -6.9323 3.2026 40 1 5.4840 -5.2812 5.5621 41 1 1.4359 -4.9741 4.5998 42 1 3.0562 -4.3048 4.2845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853816208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -108.852361 kcal Electronic energy + Delta-G solvation = -23677.432992 eV Core-core repulsion = 20237.326927 eV Total energy + Delta-G solvation = -3440.106064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15514 -39.18234 -37.19116 -36.73939 -34.12609 -33.30153 -31.80897 -29.80681 -27.57780 -27.55451 -26.43922 -25.07957 -23.66857 -21.87399 -20.93281 -19.73941 -18.78687 -17.26122 -16.93313 -16.29795 -16.17490 -15.81002 -14.94861 -14.68368 -14.57418 -14.06074 -13.88181 -13.71890 -13.51527 -12.95769 -12.71452 -12.59240 -12.38783 -12.19781 -12.12479 -12.06733 -11.80590 -11.67299 -11.57956 -11.02227 -10.97907 -10.67617 -10.53625 -10.49095 -10.30316 -10.08467 -9.93392 -9.28686 -9.16550 -8.69364 -8.46740 -7.91872 -6.04385 -4.12963 1.43347 2.19796 3.29523 3.37081 3.39324 3.43511 3.89162 4.40145 4.48877 4.57353 4.59315 4.73453 5.26259 5.30575 5.36100 5.43379 5.53191 5.55489 5.60581 5.64565 5.66182 5.78099 5.87018 6.01648 6.06951 6.11627 6.20435 6.33633 6.54253 6.60495 6.73129 6.80963 6.94297 7.00163 7.10781 7.49359 7.61519 7.80635 7.89701 8.05982 8.30266 8.47848 8.91150 9.53042 11.01393 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.004427 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.974257 B = 6322.725161 C = 6964.811968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.321 6.321 6 C 0.467 3.533 7 O -0.479 6.479 8 C 0.515 3.485 9 O -0.495 6.495 10 N -0.565 5.565 11 C 0.049 3.951 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.110 3.890 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.139 0.861 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.265 0.735 41 H 0.052 0.948 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 10.059 -11.155 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.074 3.926 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.236 6.236 6 C 0.308 3.692 7 O -0.368 6.368 8 C 0.296 3.704 9 O -0.370 6.370 10 N -0.299 5.299 11 C -0.073 4.073 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.009 4.009 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.451 10.331 -10.919 17.245 hybrid contribution 0.237 -0.669 0.630 0.949 sum -8.215 9.662 -10.289 16.331 Atomic orbital electron populations 1.22504 0.93840 1.04811 1.02873 1.22345 0.94575 0.92603 0.83116 1.21844 1.02554 0.92311 1.03009 1.22505 1.02086 1.03125 0.96400 1.86747 1.68555 1.23777 1.44533 1.24222 0.76761 0.81225 0.86993 1.90292 1.34869 1.67992 1.43668 1.18797 0.83968 0.83034 0.84621 1.90815 1.33283 1.67569 1.45289 1.48449 1.35643 1.12190 1.33619 1.23071 0.88836 0.98260 0.97114 1.21857 1.00493 0.95428 0.98779 1.21665 0.99563 0.97862 0.95999 1.18992 0.92523 0.91055 0.95340 0.95163 1.21083 1.16078 1.04251 1.14448 0.92167 1.25063 0.96108 0.95209 0.97653 1.69855 1.22614 1.20691 1.38857 0.86554 0.78905 0.80554 0.81780 1.20638 1.21128 1.19860 1.22579 0.99266 0.92758 0.86314 0.91809 0.90899 0.89755 0.91219 0.90312 0.91310 0.89688 0.90935 0.91697 0.92326 0.84454 0.92137 0.92281 0.92947 0.93149 0.92506 0.93004 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.11 1.28 1.13 -90.61 -0.10 1.18 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 5 O -0.32 -5.09 9.76 -45.05 -0.44 -5.53 16 6 C 0.47 8.01 7.22 35.40 0.26 8.27 16 7 O -0.48 -7.55 8.64 -19.07 -0.16 -7.72 16 8 C 0.52 10.77 7.74 -11.60 -0.09 10.68 16 9 O -0.49 -12.06 16.42 -7.54 -0.12 -12.18 16 10 N -0.56 -11.69 2.97 -173.27 -0.51 -12.20 16 11 C 0.05 0.83 6.27 -3.71 -0.02 0.81 16 12 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 13 C -0.11 -2.28 5.11 -26.69 -0.14 -2.41 16 14 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 15 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.52 -13.94 8.57 -34.44 -0.30 -14.24 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.39 11.38 55.43 0.63 -24.76 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.99 5.88 -51.93 -0.31 0.69 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.62 8.14 -51.94 -0.42 0.19 16 31 H 0.08 1.07 5.88 -51.93 -0.31 0.76 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.14 2.20 3.79 -56.75 -0.21 1.99 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.12 3.46 5.17 -51.92 -0.27 3.19 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -29.79 331.44 -7.12 -36.91 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.55 Total: 1.72 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 0.08 Total: 2.75 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.12 Total: -36.96 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.73 Total: -25.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.79 -7.12 -36.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853816208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.942 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds