Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46899 * 240.00097 * 3 2 1 5 5 H 1.48495 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46780 * 120.00256 * 3 2 1 7 7 C 1.37880 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50260 * 59.93698 * 9 7 2 11 11 C 1.53046 * 109.50031 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.54022 * 181.35112 * 11 9 7 13 13 C 1.53193 * 109.30943 * 298.62950 * 12 11 9 14 14 N 1.46920 * 108.77389 * 54.63814 * 13 12 11 15 15 C 1.34780 * 120.63110 * 126.36407 * 14 13 12 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 O 1.42974 * 109.47149 * 295.00021 * 18 17 15 20 20 C 1.43093 * 113.76746 * 181.20608 * 19 18 17 21 21 C 1.53251 * 108.94468 * 57.97066 * 20 19 18 22 22 C 1.53262 * 108.84384 * 305.47126 * 21 20 19 23 23 O 1.42966 * 109.47652 * 174.99843 * 18 17 15 24 24 C 1.46928 * 118.74133 * 306.64033 * 14 13 12 25 25 H 0.96992 * 120.00463 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46057 * 61.32600 * 11 9 7 27 27 H 1.09007 * 109.45420 * 301.37039 * 11 9 7 28 28 H 1.09007 * 109.49325 * 178.68049 * 12 11 9 29 29 H 1.08998 * 109.49837 * 58.58618 * 12 11 9 30 30 H 1.08998 * 109.58758 * 294.85382 * 13 12 11 31 31 H 1.09003 * 109.70256 * 174.49469 * 13 12 11 32 32 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 33 33 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 34 34 H 1.09008 * 109.47017 * 54.99761 * 18 17 15 35 35 H 1.09003 * 109.55898 * 298.12874 * 20 19 18 36 36 H 1.09002 * 109.64423 * 177.86555 * 20 19 18 37 37 H 1.09001 * 109.57565 * 185.66938 * 21 20 19 38 38 H 1.08994 * 109.68528 * 65.34836 * 21 20 19 39 39 H 1.08994 * 109.55893 * 294.68407 * 22 21 20 40 40 H 1.09002 * 109.64677 * 174.41456 * 22 21 20 41 41 H 1.09003 * 109.58862 * 173.14114 * 24 14 13 42 42 H 1.08997 * 109.58643 * 293.57176 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5571 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0335 13 6 0.6054 -5.1007 1.2184 14 7 -0.2532 -3.9115 1.3031 15 6 -1.5897 -4.0367 1.4240 16 8 -2.2877 -3.0472 1.4934 17 6 -2.2168 -5.4061 1.4742 18 6 -3.7341 -5.2675 1.6136 19 8 -4.0439 -4.6633 2.8718 20 6 -5.4469 -4.5143 3.1102 21 6 -6.1132 -5.8924 3.0363 22 6 -5.7623 -6.5405 1.6925 23 8 -4.3393 -6.5609 1.5442 24 6 0.3722 -2.5832 1.2472 25 1 -0.4850 0.8399 0.0004 26 1 2.8559 -3.6187 0.9022 27 1 2.8877 -3.5914 -0.8771 28 1 2.1899 -5.8163 -0.0571 29 1 0.8513 -5.0227 -0.9224 30 1 1.2389 -5.1578 2.1036 31 1 -0.0144 -5.9951 1.1544 32 1 -1.9837 -5.9463 0.5566 33 1 -1.8224 -5.9552 2.3293 34 1 -4.1175 -4.6431 0.8065 35 1 -5.8782 -3.8594 2.3530 36 1 -5.6070 -4.0841 4.0988 37 1 -7.1945 -5.7801 3.1161 38 1 -5.7502 -6.5198 3.8502 39 1 -6.2055 -5.9624 0.8818 40 1 -6.1465 -7.5603 1.6660 41 1 -0.4014 -1.8167 1.1994 42 1 0.9863 -2.4308 2.1347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = -138.750075 kcal Electronic energy + Delta-G solvation = -23421.214425 eV Core-core repulsion = 19979.811898 eV Total energy + Delta-G solvation = -3441.402526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10945 -39.10367 -36.65722 -35.60466 -33.46842 -33.06770 -31.73795 -30.33165 -29.40529 -26.02822 -25.17670 -24.80214 -22.98693 -21.76117 -21.19776 -19.68421 -18.20868 -17.44723 -16.73408 -16.46668 -16.11116 -15.61550 -15.24274 -14.78388 -14.72234 -14.39980 -14.35189 -13.64890 -13.32412 -13.25770 -12.87388 -12.58533 -12.47834 -12.39026 -11.85085 -11.66165 -11.58636 -11.15326 -11.12022 -10.94801 -10.84430 -10.49936 -10.35021 -10.20545 -10.04284 -9.85794 -9.62905 -9.22958 -9.07435 -8.82773 -8.40164 -7.68157 -5.97169 -4.06155 3.27392 3.32583 3.34503 3.39472 3.40850 3.72420 4.01915 4.45023 4.59359 4.60465 4.88555 4.97614 5.01139 5.21302 5.24970 5.31705 5.32528 5.36978 5.50295 5.55742 5.62576 5.71458 5.73448 5.77543 5.91619 6.04533 6.20834 6.34530 6.63249 6.71457 6.81838 6.89479 7.00815 7.18516 7.23030 7.34996 7.67543 7.91215 8.03395 8.31099 8.42215 8.92796 8.99661 9.59404 11.08056 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.004317 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.931366 B = 6484.274328 C = 7403.117148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.607 5.607 15 C 0.512 3.488 16 O -0.528 6.528 17 C -0.127 4.127 18 C 0.265 3.735 19 O -0.374 6.374 20 C 0.057 3.943 21 C -0.193 4.193 22 C 0.059 3.941 23 O -0.398 6.398 24 C 0.114 3.886 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -14.424 3.823 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.016 4.016 14 N -0.340 5.340 15 C 0.298 3.702 16 O -0.405 6.405 17 C -0.167 4.167 18 C 0.170 3.830 19 O -0.294 6.294 20 C -0.019 4.019 21 C -0.231 4.231 22 C -0.017 4.017 23 O -0.319 6.319 24 C -0.006 4.006 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.842 -13.848 3.967 16.902 hybrid contribution 0.132 0.917 -0.099 0.932 sum -8.710 -12.931 3.868 16.063 Atomic orbital electron populations 1.69872 1.05740 1.26927 1.49258 1.25050 0.94868 0.99228 0.94833 0.86654 0.79572 0.83194 0.78562 1.20304 1.21275 1.20237 1.21043 0.92865 0.90166 1.51989 0.92429 1.18893 0.92647 0.92274 0.94138 0.95402 1.21626 0.98563 0.94113 1.00540 1.21950 0.98654 0.99100 0.97521 1.21657 0.93644 0.87835 0.98502 1.48457 1.05201 1.08940 1.71436 1.19972 0.82649 0.90028 0.77541 1.90728 1.61004 1.39383 1.49341 1.21523 0.92083 0.97893 1.05229 1.22938 0.92812 0.80656 0.86627 1.88204 1.22936 1.80115 1.38177 1.22591 0.81767 0.95107 1.02479 1.22807 1.01883 0.98861 0.99518 1.22604 0.81331 1.02002 0.95811 1.88042 1.20196 1.30871 1.92759 1.22178 0.98703 0.81343 0.98424 0.92612 0.93191 0.93060 0.92206 0.92146 0.92005 0.91072 0.87217 0.87907 0.91662 0.92748 0.88490 0.89935 0.90146 0.92827 0.88478 0.85934 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 11.39 55.43 0.63 -25.27 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.24 8.56 -34.44 -0.30 -14.54 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.98 2.24 -91.87 -0.21 0.78 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 14 N -0.61 -12.32 2.98 -173.03 -0.52 -12.83 16 15 C 0.51 10.43 7.58 -10.98 -0.08 10.35 16 16 O -0.53 -13.07 14.83 -8.86 -0.13 -13.20 16 17 C -0.13 -1.95 4.13 -27.88 -0.12 -2.06 16 18 C 0.26 4.14 2.80 37.16 0.10 4.24 16 19 O -0.37 -6.26 9.77 -64.76 -0.63 -6.90 16 20 C 0.06 0.71 6.96 37.29 0.26 0.97 16 21 C -0.19 -1.84 6.35 -26.47 -0.17 -2.01 16 22 C 0.06 0.60 6.96 37.29 0.26 0.86 16 23 O -0.40 -5.43 10.54 -59.03 -0.62 -6.05 16 24 C 0.11 2.79 5.38 -3.93 -0.02 2.77 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 32 H 0.11 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.10 1.42 7.94 -51.93 -0.41 1.01 16 34 H 0.07 1.08 7.96 -51.92 -0.41 0.67 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.12 3.53 5.12 -51.93 -0.27 3.26 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -32.70 330.70 -8.82 -41.53 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.84 Total: 1.33 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.68 Total: 0.03 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.12 Total: -38.10 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.39 Total: -26.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.70 -8.82 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.223 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds