Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48494 * 109.47074 * 239.99370 * 3 2 1 5 5 H 1.48498 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46828 * 119.99807 * 3 2 1 7 7 C 1.37887 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00058 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49535 * 300.06201 * 9 7 2 11 11 C 1.53041 * 109.49659 * 179.97438 * 9 7 2 12 12 C 1.53037 * 109.53843 * 178.67895 * 11 9 7 13 13 C 1.53194 * 109.31080 * 61.36611 * 12 11 9 14 14 N 1.46922 * 108.77594 * 305.36446 * 13 12 11 15 15 C 1.34783 * 120.62921 * 233.58506 * 14 13 12 16 16 O 1.21278 * 119.99625 * 179.97438 * 15 14 13 17 17 C 1.50691 * 120.00078 * 0.02562 * 15 14 13 18 18 C 1.52999 * 109.47284 * 180.02562 * 17 15 14 19 19 O 1.42965 * 109.47388 * 184.99891 * 18 17 15 20 20 C 1.43095 * 113.76920 * 181.20420 * 19 18 17 21 21 C 1.53255 * 108.94371 * 57.97181 * 20 19 18 22 22 C 1.53262 * 108.84421 * 305.47557 * 21 20 19 23 23 O 1.42967 * 109.47087 * 64.99979 * 18 17 15 24 24 C 1.46924 * 118.73902 * 53.86222 * 14 13 12 25 25 H 0.96997 * 119.99898 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.45774 * 58.66274 * 11 9 7 27 27 H 1.08997 * 109.44619 * 298.69513 * 11 9 7 28 28 H 1.08998 * 109.50146 * 301.41844 * 12 11 9 29 29 H 1.09000 * 109.49745 * 181.31587 * 12 11 9 30 30 H 1.09004 * 109.58587 * 185.57746 * 13 12 11 31 31 H 1.08997 * 109.70578 * 65.22039 * 13 12 11 32 32 H 1.09001 * 109.47203 * 59.99962 * 17 15 14 33 33 H 1.09001 * 109.47437 * 299.99748 * 17 15 14 34 34 H 1.09005 * 109.46954 * 304.99879 * 18 17 15 35 35 H 1.09008 * 109.55651 * 177.81142 * 20 19 18 36 36 H 1.08995 * 109.55929 * 298.13217 * 20 19 18 37 37 H 1.09009 * 109.57567 * 65.28106 * 21 20 19 38 38 H 1.08998 * 109.57547 * 185.66326 * 21 20 19 39 39 H 1.08994 * 109.55727 * 294.68339 * 22 21 20 40 40 H 1.08999 * 109.64737 * 174.41493 * 22 21 20 41 41 H 1.08991 * 109.58824 * 65.92729 * 24 14 13 42 42 H 1.09001 * 109.58881 * 186.35578 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6230 -2.5566 0.8896 11 6 2.2449 -3.6629 0.0005 12 6 1.4810 -4.9885 0.0338 13 6 0.6056 -5.1003 -1.2185 14 7 -0.2529 -3.9110 -1.3030 15 6 -1.5893 -4.0361 -1.4255 16 8 -2.2872 -3.0466 -1.4939 17 6 -2.2164 -5.4054 -1.4763 18 6 -3.7335 -5.2667 -1.6175 19 8 -4.3388 -6.5601 -1.5487 20 6 -5.7618 -6.5396 -1.6987 21 6 -6.1111 -5.8915 -3.0428 22 6 -5.4446 -4.5134 -3.1160 23 8 -4.0418 -4.6626 -2.8760 24 6 0.3736 -2.5828 -1.2577 25 1 -0.4850 0.8400 -0.0004 26 1 2.8872 -3.5919 0.8783 27 1 2.8559 -3.6184 -0.9010 28 1 0.8507 -5.0231 0.9224 29 1 2.1896 -5.8164 0.0574 30 1 -0.0143 -5.9945 -1.1524 31 1 1.2376 -5.1585 -2.1046 32 1 -1.9844 -5.9456 -0.5585 33 1 -1.8212 -5.9546 -2.3309 34 1 -4.1179 -4.6423 -0.8108 35 1 -6.1459 -7.5595 -1.6744 36 1 -6.2058 -5.9614 -0.8884 37 1 -5.7451 -6.5179 -3.8564 38 1 -7.1923 -5.7791 -3.1239 39 1 -5.8766 -3.8585 -2.3594 40 1 -5.6018 -4.0823 -4.1047 41 1 0.9888 -2.4385 -2.1458 42 1 -0.3994 -1.8153 -1.2175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = -138.766048 kcal Electronic energy + Delta-G solvation = -23419.389479 eV Core-core repulsion = 19977.986260 eV Total energy + Delta-G solvation = -3441.403219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10881 -39.09487 -36.63868 -35.60469 -33.45487 -33.06445 -31.73745 -30.32355 -29.38667 -26.02806 -25.17437 -24.79783 -22.97410 -21.76341 -21.19621 -19.67975 -18.21555 -17.44730 -16.73267 -16.46342 -16.10753 -15.61293 -15.24464 -14.78425 -14.71768 -14.39913 -14.35400 -13.64677 -13.32376 -13.25497 -12.86625 -12.58272 -12.47666 -12.38280 -11.84059 -11.66196 -11.58773 -11.15405 -11.12045 -10.94980 -10.84313 -10.50278 -10.34969 -10.20543 -10.04328 -9.85412 -9.62916 -9.22661 -9.07775 -8.82840 -8.40189 -7.67647 -5.96986 -4.05780 3.27596 3.32509 3.34589 3.39578 3.40944 3.72525 4.02011 4.45215 4.59252 4.60470 4.88605 4.97721 5.01221 5.21269 5.24941 5.31702 5.32657 5.36979 5.50343 5.55920 5.62556 5.71506 5.73414 5.77512 5.91580 6.04589 6.20970 6.34508 6.62844 6.71303 6.81826 6.89215 7.00512 7.18689 7.23040 7.34407 7.67205 7.90584 8.03087 8.31089 8.42184 8.93063 8.99648 9.59622 11.08299 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.004317 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.272381 B = 6484.198528 C = 7402.748711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.607 5.607 15 C 0.512 3.488 16 O -0.528 6.528 17 C -0.127 4.127 18 C 0.265 3.735 19 O -0.398 6.398 20 C 0.059 3.941 21 C -0.193 4.193 22 C 0.057 3.943 23 O -0.374 6.374 24 C 0.114 3.886 25 H 0.264 0.736 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -14.434 -3.847 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.016 4.016 14 N -0.341 5.341 15 C 0.298 3.702 16 O -0.405 6.405 17 C -0.167 4.167 18 C 0.170 3.830 19 O -0.319 6.319 20 C -0.017 4.017 21 C -0.231 4.231 22 C -0.020 4.020 23 O -0.294 6.294 24 C -0.006 4.006 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.838 -13.858 -3.986 16.913 hybrid contribution 0.132 0.921 0.088 0.934 sum -8.706 -12.937 -3.898 16.074 Atomic orbital electron populations 1.69887 1.05733 1.26907 1.49242 1.25053 0.94869 0.99218 0.94844 0.86657 0.79573 0.83206 0.78558 1.20251 1.21279 1.20304 1.21054 0.92862 0.90206 1.51977 0.92450 1.19041 0.92628 0.92217 0.93987 0.95318 1.21624 0.98563 0.94124 1.00531 1.21947 0.98650 0.99094 0.97513 1.21656 0.93652 0.87825 0.98490 1.48463 1.05188 1.08963 1.71440 1.19973 0.82671 0.90026 0.77534 1.90727 1.61012 1.39370 1.49354 1.21521 0.92088 0.97898 1.05222 1.22937 0.92823 0.80660 0.86621 1.88045 1.20210 1.30871 1.92745 1.22608 0.81338 1.01998 0.95804 1.22812 1.01880 0.98859 0.99522 1.22596 0.81776 0.95117 1.02467 1.88203 1.22965 1.80119 1.38155 1.22349 0.98577 0.81324 0.98373 0.92629 0.93065 0.93194 0.92139 0.92213 0.91091 0.92008 0.87216 0.87914 0.91660 0.88474 0.92809 0.90144 0.89918 0.92754 0.88491 0.94075 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 11.41 55.43 0.63 -25.27 16 2 C 0.06 1.76 5.30 -17.81 -0.09 1.66 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 14 N -0.61 -12.31 2.97 -172.51 -0.51 -12.82 16 15 C 0.51 10.43 7.58 -10.99 -0.08 10.35 16 16 O -0.53 -13.07 14.83 -8.81 -0.13 -13.20 16 17 C -0.13 -1.95 4.13 -27.89 -0.12 -2.06 16 18 C 0.26 4.13 2.80 37.16 0.10 4.24 16 19 O -0.40 -5.43 10.54 -59.03 -0.62 -6.05 16 20 C 0.06 0.60 6.96 37.29 0.26 0.86 16 21 C -0.19 -1.84 6.35 -26.46 -0.17 -2.01 16 22 C 0.06 0.71 6.96 37.29 0.26 0.97 16 23 O -0.37 -6.27 9.77 -64.74 -0.63 -6.90 16 24 C 0.11 2.80 5.43 -3.49 -0.02 2.78 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.10 1.42 7.94 -51.93 -0.41 1.00 16 34 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.12 3.50 5.15 -51.93 -0.27 3.23 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -32.71 330.80 -8.82 -41.53 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.84 Total: 1.30 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.68 Total: 0.04 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.12 Total: -38.09 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.39 Total: -26.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.71 -8.82 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.240 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds