Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46070 * 2 1 4 4 N 1.46505 * 109.47099 * 60.01808 * 3 2 1 5 5 C 1.34772 * 119.99729 * 180.02562 * 4 3 2 6 6 O 1.21683 * 120.00216 * 359.97438 * 5 4 3 7 7 C 1.46378 * 119.99968 * 180.02562 * 5 4 3 8 8 H 1.08004 * 119.99629 * 359.97438 * 7 5 4 9 9 C 1.40039 * 120.00228 * 179.97438 * 7 5 4 10 10 N 1.30671 * 120.00297 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00170 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47110 * 90.00175 * 11 9 7 13 13 H 1.48502 * 109.47654 * 210.00178 * 11 9 7 14 14 H 1.48503 * 109.47561 * 330.00615 * 11 9 7 15 15 C 1.52999 * 109.46400 * 240.01838 * 2 1 3 16 16 C 1.53021 * 109.45583 * 300.15587 * 15 2 1 17 17 C 1.52961 * 109.43749 * 300.20048 * 16 15 2 18 18 C 1.52953 * 109.82463 * 59.68040 * 17 16 15 19 19 C 1.52989 * 109.45895 * 119.98131 * 2 1 3 20 20 O 1.43302 * 109.63922 * 180.25356 * 17 16 15 21 21 C 1.44208 * 107.26609 * 118.91506 * 20 17 16 22 22 C 1.54918 * 103.24202 * 338.53452 * 21 20 17 23 23 O 1.43708 * 109.40226 * 299.55715 * 17 16 15 24 24 H 1.09003 * 109.46503 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47105 * 299.97897 * 1 2 3 26 26 H 1.08995 * 109.47120 * 59.98366 * 1 2 3 27 27 H 1.09004 * 109.46583 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47405 * 300.01605 * 3 2 1 29 29 H 0.96996 * 119.99730 * 359.97438 * 4 3 2 30 30 H 0.96996 * 120.00672 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47039 * 180.16274 * 15 2 1 32 32 H 1.09000 * 109.47974 * 60.15282 * 15 2 1 33 33 H 1.09008 * 109.47351 * 180.21361 * 16 15 2 34 34 H 1.08999 * 109.48082 * 60.19751 * 16 15 2 35 35 H 1.09001 * 109.47042 * 60.33170 * 18 17 16 36 36 H 1.08995 * 109.47491 * 180.34787 * 18 17 16 37 37 H 1.09008 * 109.47062 * 179.85977 * 19 2 1 38 38 H 1.09002 * 109.47406 * 299.86037 * 19 2 1 39 39 H 1.09002 * 110.69464 * 97.02272 * 21 20 17 40 40 H 1.08997 * 110.69507 * 220.05524 * 21 20 17 41 41 H 1.09001 * 110.97739 * 153.71044 * 22 21 20 42 42 H 1.08997 * 110.98050 * 277.49504 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.5517 2.1330 1.1964 5 6 1.8767 3.4235 1.4094 6 8 2.5759 4.0151 0.6083 7 6 1.3895 4.1132 2.6051 8 1 0.7692 3.5880 3.3163 9 6 1.7276 5.4540 2.8267 10 7 2.4777 6.0896 1.9660 11 14 1.1053 6.3343 4.3522 12 1 2.0838 6.1636 5.4561 13 1 0.9398 7.7802 4.0566 14 1 -0.2026 5.7590 4.7569 15 6 2.0399 -0.7209 -1.2495 16 6 1.5263 -2.1623 -1.2515 17 6 2.0294 -2.8837 0.0000 18 6 1.5268 -2.1625 1.2517 19 6 2.0397 -0.7208 1.2495 20 8 1.5557 -4.2361 -0.0005 21 6 2.7138 -5.0952 -0.0189 22 6 3.8280 -4.1769 -0.5803 23 8 3.4664 -2.8949 -0.0007 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5141 -0.8898 27 1 3.1298 1.4427 -0.0005 28 1 1.6762 1.9565 -0.8898 29 1 0.9940 1.6615 1.8348 30 1 2.7122 7.0181 2.1196 31 1 3.1298 -0.7235 -1.2482 32 1 1.6788 -0.2053 -2.1394 33 1 1.8925 -2.6773 -2.1398 34 1 0.4363 -2.1599 -1.2563 35 1 0.4368 -2.1603 1.2568 36 1 1.8935 -2.6773 2.1396 37 1 3.1298 -0.7231 1.2484 38 1 1.6783 -0.2053 2.1393 39 1 2.9614 -5.4296 0.9886 40 1 2.5500 -5.9485 -0.6771 41 1 4.8105 -4.5008 -0.2370 42 1 3.7900 -4.1380 -1.6689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888287655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = -143.654339 kcal Electronic energy + Delta-G solvation = -23482.209049 eV Core-core repulsion = 20040.593858 eV Total energy + Delta-G solvation = -3441.615191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09145 -38.67068 -36.70952 -35.10022 -33.35471 -32.30719 -31.17130 -30.59311 -28.75349 -27.02915 -26.17960 -24.24475 -23.47502 -22.76331 -20.97175 -19.49315 -18.35109 -17.35719 -17.21094 -16.65983 -15.66231 -15.40607 -15.16824 -14.61082 -14.52837 -14.14176 -13.84445 -13.70981 -13.54628 -13.09038 -12.90144 -12.72781 -12.38411 -12.17444 -12.03486 -11.92153 -11.69300 -11.30480 -11.22116 -11.11734 -11.06551 -10.83118 -10.48522 -10.41202 -10.34698 -10.18120 -10.08267 -9.99586 -9.41724 -8.79853 -7.53646 -7.37606 -6.12530 -4.57658 3.17439 3.21189 3.24048 3.27483 3.79012 4.15235 4.32574 4.55270 4.62381 4.65766 4.67677 4.86895 4.90668 5.01785 5.12422 5.20837 5.31259 5.33617 5.38869 5.47702 5.52763 5.64300 5.70665 5.79360 5.87965 5.90376 5.95971 6.05356 6.14364 6.23664 6.30934 6.33227 6.51012 6.55429 6.69891 6.77890 6.98472 7.48649 8.01318 8.20144 8.40307 9.08465 9.63103 10.67057 10.86774 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036134 B = 0.003555 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.701391 B = 7875.439179 C = 8017.568522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C 0.146 3.854 4 N -0.764 5.764 5 C 0.555 3.445 6 O -0.582 6.582 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.906 3.094 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.259 3.741 18 C -0.119 4.119 19 C -0.102 4.102 20 O -0.381 6.381 21 C 0.021 3.979 22 C 0.013 3.987 23 O -0.363 6.363 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.378 0.622 30 H 0.267 0.733 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -21.545 -3.986 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C 0.021 3.979 4 N -0.421 5.421 5 C 0.358 3.642 6 O -0.465 6.465 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.132 4.132 10 N -0.398 5.398 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.182 3.818 18 C -0.156 4.156 19 C -0.139 4.139 20 O -0.303 6.303 21 C -0.056 4.056 22 C -0.063 4.063 23 O -0.283 6.283 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.211 0.789 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.785 -20.803 -4.568 21.313 hybrid contribution -0.434 0.004 0.936 1.032 sum -1.219 -20.799 -3.632 21.149 Atomic orbital electron populations 1.21959 0.94572 1.01034 1.02494 1.20793 0.95892 0.95489 0.94996 1.20853 0.97908 0.88998 0.90158 1.46144 1.57766 1.13778 1.24380 1.18193 0.80211 0.78829 0.86943 1.90593 1.41573 1.65698 1.48683 1.20890 1.34118 0.96463 1.06890 0.91568 1.25696 0.93407 0.97414 0.96661 1.70024 1.27224 1.09935 1.32636 0.86402 0.79796 0.78642 0.82047 1.19801 1.20527 1.18960 1.21438 1.01453 0.93208 0.97697 1.22114 1.02115 0.96516 0.96400 1.23401 0.79258 0.82933 0.96157 1.21884 1.01650 0.96418 0.95682 1.21501 1.01546 0.92859 0.98023 1.88882 1.29744 1.16081 1.95562 1.24136 0.85162 0.94464 1.01840 1.24426 0.99874 0.82972 0.99063 1.89396 1.20496 1.35818 1.82588 0.92707 0.92090 0.92631 0.93478 0.93509 0.78906 0.92212 0.90990 0.91306 0.91710 0.90004 0.89848 0.91242 0.91004 0.90866 0.90785 0.88604 0.87524 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.60 37.16 0.28 -1.64 16 2 C -0.07 -1.04 0.53 -154.51 -0.08 -1.12 16 3 C 0.15 2.87 4.56 -4.04 -0.02 2.85 16 4 N -0.76 -17.26 4.95 -61.72 -0.31 -17.56 16 5 C 0.55 16.08 7.75 -12.99 -0.10 15.98 16 6 O -0.58 -19.31 15.02 5.20 0.08 -19.23 16 7 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 10 N -0.77 -23.51 11.83 55.55 0.66 -22.85 16 11 Si 0.91 20.45 29.56 -169.99 -5.02 15.43 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 C -0.10 -1.29 4.59 -26.72 -0.12 -1.41 16 16 C -0.13 -1.53 5.00 -26.74 -0.13 -1.66 16 17 C 0.26 3.10 1.03 -26.78 -0.03 3.08 16 18 C -0.12 -1.46 5.05 -26.75 -0.14 -1.60 16 19 C -0.10 -1.44 4.42 -26.73 -0.12 -1.55 16 20 O -0.38 -4.43 10.87 -59.04 -0.64 -5.07 16 21 C 0.02 0.17 8.06 38.17 0.31 0.48 16 22 C 0.01 0.11 7.95 38.17 0.30 0.41 16 23 O -0.36 -4.48 9.69 -59.04 -0.57 -5.05 16 24 H 0.05 0.63 4.81 -51.93 -0.25 0.38 16 25 H 0.06 0.86 6.86 -51.93 -0.36 0.50 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.38 7.55 6.14 -40.82 -0.25 7.30 16 30 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 31 H 0.07 0.99 7.69 -51.93 -0.40 0.59 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.91 6.43 -51.93 -0.33 0.57 16 35 H 0.08 0.97 6.44 -51.93 -0.33 0.64 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.11 7.70 -51.92 -0.40 0.71 16 38 H 0.07 1.07 6.85 -51.93 -0.36 0.71 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -35.38 325.30 -7.64 -43.02 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.45 Total: 6.24 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.28 Total: 0.17 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.35 Total: -40.41 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.14 Total: -29.35 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.38 -7.64 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888287655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.630 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds