Wall clock time and date at job start Tue Mar 31 2020 05:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00024 * 2 1 4 4 H 1.48498 * 109.47207 * 270.00130 * 3 2 1 5 5 H 1.48503 * 109.46982 * 29.99879 * 3 2 1 6 6 H 1.48499 * 109.47137 * 149.99779 * 3 2 1 7 7 C 1.37877 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46790 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00347 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99565 * 179.97438 * 12 11 10 15 15 C 1.47752 * 125.82440 * 359.90938 * 14 12 11 16 16 C 1.54910 * 104.83776 * 155.83035 * 15 14 12 17 17 C 1.55156 * 101.58581 * 37.09416 * 16 15 14 18 18 C 1.47025 * 125.64693 * 179.97438 * 14 12 11 19 19 H 1.08992 * 109.88330 * 300.60388 * 18 14 12 20 20 C 1.53005 * 109.87974 * 61.61131 * 18 14 12 21 21 O 1.44388 * 110.11346 * 62.94160 * 20 18 14 22 22 C 1.44832 * 103.23182 * 158.39804 * 21 20 18 23 23 C 1.54461 * 102.89831 * 323.38816 * 22 21 20 24 24 O 1.43785 * 110.11215 * 179.68435 * 20 18 14 25 25 H 0.96996 * 120.00256 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46877 * 60.00394 * 9 7 2 27 27 H 1.09000 * 109.47142 * 300.00353 * 9 7 2 28 28 H 1.08998 * 109.47406 * 59.99692 * 10 9 7 29 29 H 1.09000 * 109.47017 * 299.99962 * 10 9 7 30 30 H 1.09002 * 109.47273 * 59.99819 * 11 10 9 31 31 H 1.09000 * 109.46966 * 299.99643 * 11 10 9 32 32 H 1.09000 * 110.28897 * 37.02175 * 15 14 12 33 33 H 1.08997 * 110.52699 * 274.75317 * 15 14 12 34 34 H 1.09005 * 110.99883 * 279.01670 * 16 15 14 35 35 H 1.09007 * 111.03341 * 155.18930 * 16 15 14 36 36 H 1.08998 * 110.71661 * 206.13944 * 17 16 15 37 37 H 1.08992 * 110.87034 * 82.93350 * 17 16 15 38 38 H 1.08998 * 110.14393 * 301.31312 * 20 18 14 39 39 H 1.08999 * 110.73249 * 205.03285 * 22 21 20 40 40 H 1.09006 * 110.73140 * 81.73888 * 22 21 20 41 41 H 1.08991 * 110.31711 * 262.89376 * 23 22 21 42 42 H 1.09007 * 110.40309 * 140.73917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 8 3.6520 -5.9110 -0.0022 14 7 2.0103 -7.4032 -0.0019 15 6 0.5926 -7.8192 0.0004 16 6 0.5954 -9.2413 -0.6138 17 6 1.9073 -9.8300 -0.0308 18 6 2.8511 -8.6094 -0.0031 19 1 3.4905 -8.6147 -0.8858 20 6 3.7109 -8.6454 1.2621 21 8 2.8693 -8.7320 2.4321 22 6 3.7571 -9.2741 3.4398 23 6 4.6251 -10.2674 2.6362 24 8 4.5301 -9.8271 1.2696 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8904 27 1 0.6246 -2.5572 0.8896 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.8538 -5.0446 -0.8914 31 1 0.8533 -5.0451 0.8886 32 1 -0.0010 -7.1419 -0.6135 33 1 0.2040 -7.8464 1.0184 34 1 0.6369 -9.1967 -1.7021 35 1 -0.2711 -9.8129 -0.2811 36 1 2.3035 -10.6087 -0.6824 37 1 1.7460 -10.2162 0.9756 38 1 4.3371 -7.7549 1.3159 39 1 3.1915 -9.7940 4.2130 40 1 4.3736 -8.4873 3.8745 41 1 4.2329 -11.2794 2.7359 42 1 5.6603 -10.2282 2.9754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888445128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:06 Heat of formation + Delta-G solvation = -136.468554 kcal Electronic energy + Delta-G solvation = -22914.115210 eV Core-core repulsion = 19472.811618 eV Total energy + Delta-G solvation = -3441.303592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91246 -39.53035 -37.31788 -35.15308 -34.18040 -32.25211 -31.49058 -31.27002 -28.84177 -27.67222 -25.00071 -23.99074 -23.31100 -22.50883 -21.18937 -20.01907 -18.90758 -17.31597 -17.12624 -17.02499 -16.36524 -16.00151 -15.82865 -15.16705 -14.89166 -14.48997 -14.32216 -13.81394 -13.50666 -13.46247 -13.35833 -12.88271 -12.60833 -12.31953 -12.11978 -11.95939 -11.81544 -11.54164 -11.38180 -11.30519 -10.97739 -10.77892 -10.55373 -10.51364 -10.49128 -9.98249 -9.63962 -9.62525 -9.24437 -8.99231 -8.61560 -8.29583 -5.95320 -3.96555 2.77452 2.92487 3.36478 3.42088 3.45649 3.47303 3.71208 4.29557 4.32396 4.39253 4.51433 4.54224 4.67344 4.84154 5.01602 5.06664 5.13651 5.14662 5.22045 5.32008 5.40713 5.45983 5.54585 5.58123 5.69240 5.71466 5.74380 5.78686 5.84584 6.03454 6.23554 6.35281 6.72061 6.76102 6.96663 7.18868 7.58943 7.73972 7.86863 8.05609 8.40731 8.49711 9.10493 9.67200 11.16239 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.003358 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.150141 B = 8335.298671 C = 8915.998397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.531 3.469 13 O -0.538 6.538 14 N -0.616 5.616 15 C 0.103 3.897 16 C -0.133 4.133 17 C -0.118 4.118 18 C 0.140 3.860 19 H 0.092 0.908 20 C 0.219 3.781 21 O -0.365 6.365 22 C 0.013 3.987 23 C 0.022 3.978 24 O -0.383 6.383 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -25.066 3.725 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.171 4.171 12 C 0.322 3.678 13 O -0.414 6.414 14 N -0.353 5.353 15 C -0.020 4.020 16 C -0.171 4.171 17 C -0.156 4.156 18 C 0.035 3.965 19 H 0.110 0.890 20 C 0.123 3.877 21 O -0.285 6.285 22 C -0.064 4.064 23 C -0.054 4.054 24 O -0.303 6.303 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.585 -24.748 3.564 25.136 hybrid contribution 0.540 0.938 0.275 1.117 sum 3.125 -23.810 3.839 24.319 Atomic orbital electron populations 1.69962 1.06027 1.26511 1.51257 1.25019 0.94857 0.99233 0.95418 0.86591 0.79896 0.83429 0.78093 1.20681 1.21276 1.19849 1.21275 0.93188 0.91018 1.50074 0.92592 1.19126 0.93953 0.91415 0.97124 1.21461 0.98663 0.91513 1.01666 1.21830 0.98015 0.93608 1.03691 1.21065 0.90208 0.82201 0.74315 1.90664 1.17313 1.83864 1.49541 1.48680 1.07293 1.04475 1.74863 1.22380 0.82331 0.95873 1.01421 1.22789 0.98059 0.95359 1.00872 1.22548 0.94459 0.95919 1.02681 1.21569 0.93082 0.86187 0.95617 0.88987 1.24842 0.86401 0.89074 0.87350 1.89474 1.34168 1.84434 1.20375 1.24251 0.92931 0.96276 0.92965 1.23939 1.00909 0.98956 0.81636 1.88867 1.70662 1.44722 1.26084 0.93088 0.96595 0.96601 0.92742 0.92687 0.89372 0.89338 0.89985 0.90936 0.90511 0.89717 0.90062 0.89857 0.89177 0.87513 0.90724 0.89956 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.09 -2.12 4.44 -26.73 -0.12 -2.23 16 11 C -0.13 -2.31 4.72 -27.88 -0.13 -2.45 16 12 C 0.53 9.26 7.64 -10.98 -0.08 9.17 16 13 O -0.54 -11.18 15.00 5.56 0.08 -11.09 16 14 N -0.62 -8.52 3.02 -162.75 -0.49 -9.01 16 15 C 0.10 1.07 6.71 -2.35 -0.02 1.05 16 16 C -0.13 -1.07 7.08 -24.58 -0.17 -1.24 16 17 C -0.12 -1.10 6.12 -24.90 -0.15 -1.25 16 18 C 0.14 1.76 3.01 -66.95 -0.20 1.56 16 19 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 20 C 0.22 2.92 3.47 37.16 0.13 3.05 16 21 O -0.36 -4.60 10.41 -59.28 -0.62 -5.21 16 22 C 0.01 0.11 7.81 37.92 0.30 0.41 16 23 C 0.02 0.19 8.08 37.92 0.31 0.49 16 24 O -0.38 -4.60 10.99 -59.28 -0.65 -5.25 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 29 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 30 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 0.79 7.50 -51.93 -0.39 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.80 7.06 -51.93 -0.37 0.43 16 38 H 0.09 1.45 6.85 -51.93 -0.36 1.09 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -34.47 341.44 -8.49 -42.96 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.98 Total: -3.16 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.70 Total: -4.99 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.24 Total: -35.61 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -1.19 Total: -21.56 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.47 -8.49 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888445128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.511 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds