Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00298 * 3 2 1 5 5 H 1.48506 * 109.47006 * 30.00390 * 3 2 1 6 6 H 1.48503 * 109.47220 * 150.00296 * 3 2 1 7 7 C 1.37876 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99549 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47257 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.47421 * 125.64843 * 359.69671 * 14 12 11 16 16 C 1.54688 * 104.94018 * 204.07191 * 15 14 12 17 17 C 1.55157 * 101.67843 * 323.27584 * 16 15 14 18 18 C 1.47018 * 125.64722 * 180.02562 * 14 12 11 19 19 H 1.09005 * 109.88319 * 59.48562 * 18 14 12 20 20 C 1.53006 * 109.88252 * 298.47810 * 18 14 12 21 21 O 1.43748 * 109.62920 * 298.90567 * 20 18 14 22 22 C 1.44583 * 104.91905 * 215.71044 * 21 20 18 23 23 C 1.54915 * 101.63654 * 36.27001 * 22 21 20 24 24 O 1.43364 * 109.62966 * 179.69074 * 20 18 14 25 25 H 0.96998 * 120.00131 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47707 * 60.00373 * 9 7 2 27 27 H 1.09000 * 109.47092 * 299.99406 * 9 7 2 28 28 H 1.09004 * 109.47166 * 59.99374 * 10 9 7 29 29 H 1.09005 * 109.46988 * 299.99761 * 10 9 7 30 30 H 1.09004 * 109.47330 * 59.99726 * 11 10 9 31 31 H 1.08997 * 109.47279 * 300.00213 * 11 10 9 32 32 H 1.09006 * 110.36331 * 322.99775 * 15 14 12 33 33 H 1.08996 * 110.37004 * 85.32234 * 15 14 12 34 34 H 1.09002 * 111.10601 * 205.10460 * 16 15 14 35 35 H 1.09000 * 110.84695 * 81.33254 * 16 15 14 36 36 H 1.09002 * 110.71837 * 276.97272 * 17 16 15 37 37 H 1.08996 * 110.72155 * 153.69686 * 17 16 15 38 38 H 1.09001 * 109.62946 * 59.29648 * 20 18 14 39 39 H 1.09004 * 111.08864 * 278.16176 * 22 21 20 40 40 H 1.09003 * 110.98033 * 154.32943 * 22 21 20 41 41 H 1.09004 * 110.69601 * 205.96045 * 23 22 21 42 42 H 1.08996 * 110.69696 * 82.75474 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4598 -6.1324 -0.0005 13 8 3.6522 -5.9108 -0.0009 14 7 2.0106 -7.4032 -0.0006 15 6 0.5948 -7.8140 0.0062 16 6 0.5952 -9.2369 0.6130 17 6 1.9048 -9.8277 0.0270 18 6 2.8514 -8.6092 -0.0007 19 1 3.4903 -8.6157 0.8824 20 6 3.7118 -8.6436 -1.2654 21 8 2.8638 -8.6847 -2.4254 22 6 3.5650 -9.5259 -3.3695 23 6 4.2026 -10.5825 -2.4330 24 8 4.5345 -9.8177 -1.2565 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 0.8535 -5.0451 -0.8896 31 1 0.8541 -5.0445 0.8903 32 1 0.0064 -7.1371 0.6257 33 1 0.2017 -7.8376 -1.0102 34 1 -0.2731 -9.8057 0.2804 35 1 0.6385 -9.1944 1.7013 36 1 1.7385 -10.2103 -0.9800 37 1 2.3003 -10.6083 0.6769 38 1 4.3421 -7.7551 -1.3038 39 1 4.3317 -8.9632 -3.9021 40 1 2.8700 -9.9922 -4.0678 41 1 5.1006 -11.0050 -2.8838 42 1 3.4852 -11.3672 -2.1926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888445132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -135.387646 kcal Electronic energy + Delta-G solvation = -22955.587175 eV Core-core repulsion = 19514.330454 eV Total energy + Delta-G solvation = -3441.256721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00892 -39.51173 -37.28808 -35.20862 -34.16661 -32.22639 -31.49709 -31.25188 -28.86974 -27.67241 -24.94444 -23.96480 -23.46550 -22.49472 -21.19819 -20.00767 -18.91643 -17.45454 -17.16469 -16.91895 -16.41157 -16.04885 -15.73990 -15.16018 -14.70780 -14.46126 -14.32229 -13.81286 -13.49664 -13.45955 -13.34697 -13.02670 -12.68554 -12.32714 -12.11315 -11.92095 -11.81843 -11.66738 -11.40310 -11.29679 -11.01235 -10.77176 -10.54034 -10.50306 -10.45802 -9.93231 -9.62404 -9.60930 -9.23043 -8.98077 -8.54946 -8.28750 -5.94496 -3.95677 2.80721 2.94149 3.36965 3.37186 3.42725 3.47908 3.78361 4.26806 4.31312 4.37803 4.52205 4.56453 4.66231 4.79680 4.95706 5.09636 5.12380 5.16721 5.23747 5.29570 5.41534 5.50891 5.53340 5.57851 5.63197 5.69895 5.71753 5.77892 5.83729 5.99805 6.25436 6.37558 6.77678 6.82638 6.98228 7.20308 7.61886 7.75081 7.88007 8.06535 8.43774 8.50754 9.11422 9.68057 11.17058 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.003321 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.237846 B = 8428.494820 C = 8935.192497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.531 3.469 13 O -0.537 6.537 14 N -0.615 5.615 15 C 0.103 3.897 16 C -0.132 4.132 17 C -0.120 4.120 18 C 0.127 3.873 19 H 0.091 0.909 20 C 0.223 3.777 21 O -0.366 6.366 22 C 0.014 3.986 23 C 0.020 3.980 24 O -0.381 6.381 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -25.974 -3.571 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.171 4.171 12 C 0.322 3.678 13 O -0.414 6.414 14 N -0.352 5.352 15 C -0.020 4.020 16 C -0.170 4.170 17 C -0.158 4.158 18 C 0.022 3.978 19 H 0.109 0.891 20 C 0.127 3.873 21 O -0.286 6.286 22 C -0.062 4.062 23 C -0.056 4.056 24 O -0.302 6.302 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.068 -25.568 -3.433 25.880 hybrid contribution 0.410 0.835 -0.211 0.954 sum 2.477 -24.733 -3.644 25.122 Atomic orbital electron populations 1.69963 1.06027 1.26495 1.51291 1.25018 0.94855 0.99227 0.95427 0.86594 0.79909 0.83436 0.78085 1.20694 1.21281 1.19834 1.21277 0.93197 0.91022 1.50032 0.92582 1.19126 0.93955 0.91422 0.97109 1.21462 0.98659 0.91513 1.01674 1.21822 0.98020 0.93650 1.03641 1.21047 0.90201 0.82209 0.74355 1.90664 1.17308 1.83859 1.49529 1.48577 1.07192 1.04551 1.74886 1.22269 0.82552 0.95824 1.01370 1.22741 0.97944 0.95429 1.00911 1.22573 0.94772 0.96185 1.02310 1.21894 0.93258 0.85963 0.96637 0.89144 1.24567 0.86656 0.89373 0.86722 1.89235 1.44231 1.69993 1.25182 1.24359 0.97351 0.91074 0.93464 1.24201 1.01187 0.94952 0.85266 1.88889 1.61497 1.35139 1.44643 0.93098 0.96604 0.96611 0.92698 0.92723 0.89365 0.89429 0.90033 0.91040 0.89760 0.90544 0.90239 0.90122 0.88295 0.90625 0.87391 0.88294 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.13 -2.33 4.71 -27.89 -0.13 -2.46 16 12 C 0.53 9.34 7.64 -10.98 -0.08 9.26 16 13 O -0.54 -11.29 14.99 5.56 0.08 -11.21 16 14 N -0.61 -8.55 2.97 -163.15 -0.48 -9.03 16 15 C 0.10 1.07 6.68 -2.65 -0.02 1.05 16 16 C -0.13 -1.05 7.07 -24.70 -0.17 -1.22 16 17 C -0.12 -1.08 6.13 -24.90 -0.15 -1.23 16 18 C 0.13 1.59 2.97 -66.95 -0.20 1.39 16 19 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 20 C 0.22 2.96 3.59 37.16 0.13 3.09 16 21 O -0.37 -4.58 10.25 -59.05 -0.61 -5.18 16 22 C 0.01 0.12 7.95 38.17 0.30 0.42 16 23 C 0.02 0.16 8.01 38.17 0.31 0.46 16 24 O -0.38 -4.49 10.94 -59.05 -0.65 -5.13 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16 32 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.71 7.06 -51.93 -0.37 0.34 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.62 6.83 -51.93 -0.35 1.27 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -34.73 341.20 -8.45 -43.19 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.97 Total: -3.29 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.69 Total: -5.09 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.25 Total: -35.71 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.17 Total: -21.52 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.73 -8.45 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888445132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.202 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds