Wall clock time and date at job start Tue Mar 31 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.52994 * 109.47322 * 239.99546 * 2 1 3 5 5 O 1.45201 * 109.46963 * 119.99464 * 2 1 3 6 6 C 1.34223 * 117.00162 * 60.00430 * 5 2 1 7 7 O 1.20831 * 120.00126 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00447 * 180.02562 * 6 5 2 9 9 H 1.09008 * 110.01209 * 328.06098 * 8 6 5 10 10 C 1.54269 * 110.03181 * 206.67499 * 8 6 5 11 11 C 1.54965 * 104.15808 * 217.13194 * 10 8 6 12 12 C 1.54899 * 102.77787 * 37.88446 * 11 10 8 13 13 C 1.53873 * 110.03479 * 89.45183 * 8 6 5 14 14 H 1.09000 * 110.02973 * 238.61954 * 13 8 6 15 15 N 1.46496 * 110.03009 * 0.02562 * 13 8 6 16 16 C 1.34785 * 119.99353 * 210.53077 * 15 13 8 17 17 O 1.21682 * 120.00613 * 359.97438 * 16 15 13 18 18 C 1.46374 * 119.99499 * 179.97438 * 16 15 13 19 19 H 1.08001 * 120.00528 * 6.72485 * 18 16 15 20 20 C 1.40046 * 119.99964 * 186.71644 * 18 16 15 21 21 N 1.30674 * 120.00376 * 353.25628 * 20 18 16 22 22 Si 1.86799 * 120.00236 * 173.25182 * 20 18 16 23 23 H 1.48499 * 109.47192 * 94.97692 * 22 20 18 24 24 H 1.48505 * 109.47581 * 214.97962 * 22 20 18 25 25 H 1.48506 * 109.47235 * 334.98048 * 22 20 18 26 26 H 1.09006 * 109.47479 * 300.00443 * 1 2 3 27 27 H 1.09001 * 109.47170 * 60.00282 * 1 2 3 28 28 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46685 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46997 * 299.99077 * 3 2 1 31 31 H 1.08996 * 109.47546 * 60.00072 * 3 2 1 32 32 H 1.08998 * 109.47164 * 299.99800 * 4 2 1 33 33 H 1.09001 * 109.46858 * 59.99980 * 4 2 1 34 34 H 1.09003 * 109.46864 * 180.02562 * 4 2 1 35 35 H 1.09000 * 110.48604 * 335.77635 * 10 8 6 36 36 H 1.08998 * 110.48700 * 98.42741 * 10 8 6 37 37 H 1.08999 * 110.72125 * 279.57657 * 11 10 8 38 38 H 1.09001 * 110.92762 * 156.29355 * 11 10 8 39 39 H 1.08991 * 110.48711 * 203.40324 * 12 11 10 40 40 H 1.08999 * 110.59237 * 80.81998 * 12 11 10 41 41 H 0.96996 * 120.00387 * 30.52492 * 15 13 8 42 42 H 0.96990 * 120.00428 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9560 -2.5025 0.5084 8 6 2.1173 -2.7432 2.5444 9 1 3.0988 -2.3895 2.8602 10 6 2.1794 -4.2487 2.2135 11 6 1.7089 -4.9429 3.5166 12 6 0.5870 -4.0013 4.0207 13 6 1.1056 -2.5858 3.6931 14 1 1.5962 -2.1558 4.5663 15 7 -0.0056 -1.7303 3.2694 16 6 -0.6484 -0.9640 4.1729 17 8 -0.3061 -0.9831 5.3404 18 6 -1.7582 -0.1087 3.7495 19 1 -2.1331 -0.1714 2.7386 20 6 -2.3342 0.7907 4.6553 21 7 -1.9723 0.7754 5.9109 22 14 -3.6197 2.0126 4.0689 23 1 -4.9759 1.4557 4.3048 24 1 -3.4704 3.2862 4.8179 25 1 -3.4349 2.2673 2.6175 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2490 33 1 1.6766 -0.2075 -2.1391 34 1 3.1300 -0.7217 -1.2488 35 1 1.5058 -4.4865 1.3902 36 1 3.2000 -4.5440 1.9702 37 1 2.5222 -4.9966 4.2403 38 1 1.3138 -5.9370 3.3074 39 1 0.4461 -4.1168 5.0952 40 1 -0.3453 -4.1980 3.4913 41 1 -0.2786 -1.7152 2.3388 42 1 -2.3709 1.3985 6.5382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890595523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:04 Heat of formation + Delta-G solvation = -142.452929 kcal Electronic energy + Delta-G solvation = -24207.730651 eV Core-core repulsion = 20766.167556 eV Total energy + Delta-G solvation = -3441.563094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87917 -38.45192 -36.76662 -35.93256 -33.83156 -32.69519 -31.90400 -29.22358 -27.61923 -27.30595 -27.14147 -25.62897 -23.12590 -20.70834 -20.22998 -19.89882 -18.72139 -17.52227 -16.87490 -16.30393 -15.74911 -15.26914 -14.95542 -14.84185 -14.13376 -13.89540 -13.69374 -13.55451 -13.35006 -12.70461 -12.38785 -12.23800 -12.11534 -11.88223 -11.77395 -11.69592 -11.46881 -11.32084 -11.12139 -11.00071 -10.94800 -10.84612 -10.79942 -10.53407 -10.42236 -10.31323 -10.19935 -10.12974 -9.61467 -8.84710 -7.62381 -7.54672 -6.19791 -4.63058 2.50849 2.94921 3.13047 3.20576 3.24174 4.10080 4.54268 4.62345 4.78928 4.82849 4.85868 4.93329 5.00707 5.09140 5.33942 5.55431 5.56284 5.67453 5.70024 5.71403 5.75456 5.82721 5.89222 5.93904 5.97328 6.04373 6.08338 6.09657 6.12395 6.22396 6.37034 6.44100 6.59893 6.61355 6.73540 6.83672 7.43918 7.88818 8.07494 8.13830 8.32777 9.02898 9.49582 10.59296 10.77803 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.007499 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.602134 B = 3732.730428 C = 5342.005601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.117 3.883 3 C -0.141 4.141 4 C -0.180 4.180 5 O -0.342 6.342 6 C 0.485 3.515 7 O -0.512 6.512 8 C -0.101 4.101 9 H 0.103 0.897 10 C -0.113 4.113 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.165 3.835 14 H 0.096 0.904 15 N -0.763 5.763 16 C 0.559 3.441 17 O -0.579 6.579 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.090 3.910 21 N -0.766 5.766 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.379 0.621 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.519 -4.171 -11.287 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.081 3.919 3 C -0.198 4.198 4 C -0.237 4.237 5 O -0.258 6.258 6 C 0.330 3.670 7 O -0.401 6.401 8 C -0.121 4.121 9 H 0.121 0.879 10 C -0.151 4.151 11 C -0.159 4.159 12 C -0.172 4.172 13 C 0.057 3.943 14 H 0.114 0.886 15 N -0.420 5.420 16 C 0.363 3.637 17 O -0.462 6.462 18 C -0.580 4.580 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.395 5.395 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.213 0.787 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.538 -4.192 -10.503 14.170 hybrid contribution -0.825 0.727 -0.869 1.401 sum 7.713 -3.465 -11.373 14.172 Atomic orbital electron populations 1.22528 0.93581 1.04856 1.03438 1.22135 0.94880 0.92126 0.82728 1.21839 1.01638 0.93054 1.03260 1.22483 1.01175 1.03173 0.96913 1.86602 1.69188 1.25290 1.44758 1.23256 0.76888 0.80540 0.86354 1.90532 1.35738 1.70293 1.43525 1.22209 1.02159 0.95386 0.92394 0.87900 1.22431 1.01946 0.91227 0.99490 1.22463 0.98635 0.98521 0.96287 1.22856 0.98279 0.94402 1.01700 1.21107 0.87442 0.91268 0.94439 0.88574 1.46472 1.36068 1.47742 1.11734 1.18189 0.82607 0.78621 0.84283 1.90587 1.68924 1.68740 1.17910 1.20833 1.16877 1.21894 0.98422 0.91647 1.25668 0.96224 0.96925 0.94184 1.70017 1.35903 1.31003 1.02581 0.86431 0.81036 0.80076 0.79692 1.19821 1.20357 1.18835 0.90420 0.91587 0.89957 0.91915 0.90687 0.90953 0.89874 0.91345 0.92449 0.89551 0.91320 0.91366 0.91348 0.91008 0.91155 0.78734 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 8.37 37.15 0.31 -2.64 16 2 C 0.12 1.72 1.13 -90.62 -0.10 1.62 16 3 C -0.14 -1.75 8.85 37.16 0.33 -1.43 16 4 C -0.18 -2.26 8.37 37.15 0.31 -1.95 16 5 O -0.34 -5.85 9.89 -39.24 -0.39 -6.24 16 6 C 0.49 8.24 4.29 36.01 0.15 8.40 16 7 O -0.51 -8.99 10.64 -18.75 -0.20 -9.19 16 8 C -0.10 -1.58 3.40 -90.65 -0.31 -1.89 16 9 H 0.10 1.42 8.14 -51.92 -0.42 0.99 16 10 C -0.11 -1.47 6.31 -25.03 -0.16 -1.63 16 11 C -0.12 -1.55 6.91 -24.69 -0.17 -1.72 16 12 C -0.13 -2.27 6.54 -25.07 -0.16 -2.43 16 13 C 0.16 3.17 3.32 -66.82 -0.22 2.95 16 14 H 0.10 2.05 7.40 -51.93 -0.38 1.66 16 15 N -0.76 -17.58 4.50 -54.13 -0.24 -17.83 16 16 C 0.56 15.91 7.74 -12.98 -0.10 15.81 16 17 O -0.58 -18.51 14.62 5.20 0.08 -18.43 16 18 C -0.54 -15.45 9.53 -35.63 -0.34 -15.79 16 19 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 20 C 0.09 2.51 5.49 -17.37 -0.10 2.42 16 21 N -0.77 -22.93 11.86 55.55 0.66 -22.27 16 22 Si 0.90 20.24 29.56 -169.99 -5.03 15.22 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.41 5.89 -51.93 -0.31 1.11 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.17 5.89 -51.93 -0.31 0.87 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.22 6.83 -51.93 -0.35 0.86 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.27 8.05 -51.93 -0.42 0.86 16 41 H 0.38 8.38 6.44 -40.82 -0.26 8.12 16 42 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -33.54 336.99 -7.25 -40.79 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.65 Total: 11.16 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.55 Total: 1.73 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.42 Total: -40.10 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.51 Total: -33.87 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.54 -7.25 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890595523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.660 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds