Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47067 * 120.00485 * 2 1 3 5 5 N 1.46505 * 109.47367 * 65.00305 * 4 2 1 6 6 C 1.46757 * 124.35188 * 89.99260 * 5 4 2 7 7 C 1.54479 * 105.47312 * 163.00717 * 6 5 4 8 8 H 1.09005 * 110.97388 * 267.26503 * 7 6 5 9 9 C 1.50697 * 110.97306 * 143.53618 * 7 6 5 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 7 6 11 11 O 1.34230 * 120.00262 * 179.72243 * 9 7 6 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 7 13 13 C 1.52994 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99561 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46972 * 60.00315 * 18 16 14 20 20 H 1.48502 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47336 * 299.99813 * 18 16 14 22 22 C 1.54631 * 101.76499 * 25.41914 * 7 6 5 23 23 C 1.34421 * 124.34563 * 270.02552 * 5 4 2 24 24 O 1.21280 * 124.94272 * 0.38293 * 23 5 4 25 25 H 1.08997 * 109.47003 * 59.99743 * 1 2 3 26 26 H 1.09004 * 109.46827 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47084 * 299.99367 * 1 2 3 28 28 H 1.09007 * 109.46930 * 240.00619 * 2 1 3 29 29 H 1.08995 * 109.46895 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47374 * 300.00030 * 3 2 1 31 31 H 1.09007 * 109.46695 * 60.00475 * 3 2 1 32 32 H 1.08996 * 109.47202 * 304.99692 * 4 2 1 33 33 H 1.09002 * 109.46580 * 184.99830 * 4 2 1 34 34 H 1.09004 * 110.24571 * 44.01214 * 6 5 4 35 35 H 1.08996 * 110.32689 * 282.04747 * 6 5 4 36 36 H 1.08998 * 109.47630 * 300.00638 * 12 11 9 37 37 H 1.09004 * 109.46770 * 60.01042 * 12 11 9 38 38 H 1.08997 * 109.47687 * 300.00275 * 13 12 11 39 39 H 1.09002 * 109.47633 * 60.00402 * 13 12 11 40 40 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.48627 * 93.88030 * 22 7 6 42 42 H 1.08999 * 110.48562 * 216.52471 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6525 -2.1330 1.1904 6 6 2.4687 -3.1912 0.5840 7 6 1.8951 -4.5178 1.1296 8 1 2.4262 -4.8323 2.0281 9 6 1.9354 -5.5960 0.0775 10 8 2.3788 -5.3530 -1.0199 11 8 1.4843 -6.8280 0.3614 12 6 1.5594 -7.8178 -0.6983 13 6 1.0032 -9.1501 -0.1919 14 6 1.0816 -10.1777 -1.2914 15 1 1.4880 -9.9076 -2.2549 16 6 0.6346 -11.4626 -1.0674 17 7 0.1393 -11.7913 0.1057 18 14 0.7313 -12.7361 -2.4306 19 1 2.1471 -12.9153 -2.8411 20 1 0.1915 -14.0293 -1.9391 21 1 -0.0674 -12.2763 -3.5951 22 6 0.4376 -4.1196 1.4582 23 6 0.5034 -2.6252 1.6844 24 8 -0.3558 -1.9670 2.2318 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6055 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 3.5115 -3.0806 0.8816 35 1 2.3818 -3.1611 -0.5020 36 1 0.9726 -7.4807 -1.5527 37 1 2.5986 -7.9488 -1.0000 38 1 1.5896 -9.4875 0.6627 39 1 -0.0360 -9.0189 0.1097 40 1 -0.1749 -12.6954 0.2634 41 1 -0.2192 -4.3499 0.6194 42 1 0.0977 -4.6274 2.3608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914678046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -142.410141 kcal Electronic energy + Delta-G solvation = -22209.670709 eV Core-core repulsion = 18768.109470 eV Total energy + Delta-G solvation = -3441.561239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11487 -39.76984 -36.86296 -36.50097 -35.75096 -33.41222 -32.25107 -30.30329 -28.02023 -27.38467 -26.83029 -25.22659 -23.55238 -21.08851 -20.78806 -20.37721 -19.48772 -17.90229 -17.13331 -16.77712 -16.05889 -15.94183 -15.74926 -15.29260 -14.92533 -14.54699 -14.20630 -14.02242 -13.90562 -13.33062 -12.97183 -12.94778 -12.69384 -12.50182 -12.39588 -12.27349 -11.84213 -11.65094 -11.37731 -11.29461 -11.20112 -11.10671 -10.99168 -10.79858 -10.75891 -10.43519 -9.96070 -9.73630 -9.67671 -9.36147 -8.93509 -8.48050 -6.14085 -4.18995 2.30717 2.39880 2.59794 3.02638 3.27529 3.32003 3.34961 3.99897 4.13752 4.35462 4.51217 4.54885 4.62278 4.69882 4.77779 5.09098 5.13248 5.19438 5.22362 5.22530 5.33941 5.38681 5.48174 5.56833 5.61913 5.64529 5.65918 5.80805 5.97123 5.98951 6.00511 6.13089 6.27577 6.55801 6.82174 6.86247 7.49369 7.56460 7.80564 7.95047 8.03950 8.18953 8.86279 9.45740 10.97289 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037371 B = 0.002761 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.063750 B =10140.400866 C =10394.916308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.131 3.869 5 N -0.619 5.619 6 C 0.114 3.886 7 C -0.098 4.098 8 H 0.128 0.872 9 C 0.468 3.532 10 O -0.512 6.512 11 O -0.351 6.351 12 C 0.075 3.925 13 C 0.025 3.975 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.143 4.143 23 C 0.522 3.478 24 O -0.524 6.524 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.111 0.889 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 22.425 2.910 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.202 4.202 4 C 0.010 3.990 5 N -0.353 5.353 6 C -0.009 4.009 7 C -0.118 4.118 8 H 0.146 0.854 9 C 0.310 3.690 10 O -0.401 6.401 11 O -0.266 6.266 12 C 0.002 3.998 13 C -0.013 4.013 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.183 4.183 23 C 0.310 3.690 24 O -0.400 6.400 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.813 22.714 2.975 23.408 hybrid contribution 0.174 -0.908 -0.922 1.306 sum 4.988 21.806 2.053 22.463 Atomic orbital electron populations 1.21799 0.94394 1.02183 1.01532 1.21562 0.97035 0.96377 0.98599 1.21770 1.00856 0.95393 1.02195 1.21514 0.99996 0.78809 0.98718 1.48295 1.20479 1.07987 1.58518 1.22031 0.95320 0.83795 0.99757 1.21857 0.98775 0.92395 0.98761 0.85397 1.22868 0.74643 0.83833 0.87659 1.90649 1.42992 1.82200 1.24265 1.86531 1.74315 1.19593 1.46191 1.23715 1.01398 0.87208 0.87434 1.19172 0.97321 0.87110 0.97650 1.20926 1.42643 0.94859 0.98255 0.92306 1.24978 0.94833 0.98446 0.95839 1.69957 1.40911 1.19894 1.21997 0.86528 0.78552 0.80341 0.81851 1.20057 1.21099 1.20048 1.22333 0.95822 0.93868 1.06290 1.20747 0.81156 0.89949 0.77178 1.90734 1.40879 1.65395 1.43030 0.93065 0.92718 0.92361 0.90824 0.92545 0.92304 0.92465 0.89814 0.90208 0.89369 0.88907 0.92162 0.92121 0.95307 0.95279 0.92592 0.87086 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.32 37.16 0.31 -1.09 16 2 C -0.12 -0.94 3.13 -90.62 -0.28 -1.22 16 3 C -0.14 -0.90 9.19 37.16 0.34 -0.56 16 4 C 0.13 1.06 5.38 -4.04 -0.02 1.04 16 5 N -0.62 -6.07 2.78 -172.42 -0.48 -6.55 16 6 C 0.11 1.05 6.71 -3.13 -0.02 1.03 16 7 C -0.10 -1.04 3.66 -90.14 -0.33 -1.37 16 8 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.47 7.09 7.19 36.00 0.26 7.35 16 10 O -0.51 -8.88 15.25 -18.76 -0.29 -9.17 16 11 O -0.35 -6.38 10.22 -39.26 -0.40 -6.78 16 12 C 0.07 1.57 5.40 37.15 0.20 1.77 16 13 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 14 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.14 -1.56 6.41 -26.74 -0.17 -1.73 16 23 C 0.52 6.28 6.62 -10.86 -0.07 6.21 16 24 O -0.52 -7.92 16.41 5.56 0.09 -7.83 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.65 6.12 -51.93 -0.32 0.33 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.98 6.96 -51.93 -0.36 0.62 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 41 H 0.11 1.26 7.89 -51.93 -0.41 0.85 16 42 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -31.80 349.67 -7.40 -39.20 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.96 Total: -3.66 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.35 Total: -1.30 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.26 Total: -31.77 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.60 Total: -23.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.80 -7.40 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914678046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.209 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds