Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46506 * 109.46940 * 119.99442 * 2 1 3 6 6 C 1.46763 * 124.34806 * 60.00456 * 5 2 1 7 7 C 1.54482 * 105.47085 * 197.01692 * 6 5 2 8 8 H 1.08995 * 110.97376 * 92.70400 * 7 6 5 9 9 C 1.50704 * 110.96630 * 216.46207 * 7 6 5 10 10 O 1.20825 * 119.99593 * 359.97438 * 9 7 6 11 11 O 1.34226 * 119.99955 * 179.97438 * 9 7 6 12 12 C 1.45202 * 116.99897 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47101 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47338 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99760 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00004 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00089 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46997 * 90.00124 * 18 16 14 20 20 H 1.48496 * 109.47186 * 209.99739 * 18 16 14 21 21 H 1.48501 * 109.47409 * 330.00054 * 18 16 14 22 22 C 1.54627 * 101.76258 * 334.57759 * 7 6 5 23 23 C 1.34415 * 124.35240 * 239.70007 * 5 2 1 24 24 O 1.21288 * 124.93994 * 359.56544 * 23 5 2 25 25 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 26 26 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 30 30 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 31 31 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 32 32 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 33 33 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 34 34 H 1.08999 * 110.24140 * 316.01119 * 6 5 2 35 35 H 1.08991 * 110.24828 * 78.00872 * 6 5 2 36 36 H 1.08998 * 109.46858 * 299.99929 * 12 11 9 37 37 H 1.09001 * 109.47400 * 59.99704 * 12 11 9 38 38 H 1.08998 * 109.47233 * 299.99732 * 13 12 11 39 39 H 1.09001 * 109.47208 * 59.99619 * 13 12 11 40 40 H 0.96998 * 120.00125 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.47953 * 143.47864 * 22 7 6 42 42 H 1.09002 * 110.48898 * 266.12186 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.7231 -2.0906 1.5227 7 6 2.0549 -2.2426 3.0238 8 1 1.1710 -2.0707 3.6380 9 6 2.6527 -3.5961 3.3097 10 8 2.8103 -4.3887 2.4115 11 8 3.0100 -3.9211 4.5620 12 6 3.5798 -5.2413 4.7634 13 6 3.9230 -5.4285 6.2426 14 6 4.5138 -6.7990 6.4517 15 1 4.6329 -7.4693 5.6134 16 6 4.9032 -7.1967 7.7132 17 7 5.4192 -8.3925 7.8956 18 14 4.6978 -6.0370 9.1630 19 1 3.3631 -6.2467 9.7795 20 1 5.7558 -6.3096 10.1687 21 1 4.8111 -4.6327 8.6936 22 6 3.0994 -1.1214 3.2309 23 6 2.7989 -0.1249 2.1330 24 8 3.2018 1.0187 2.1035 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 0.6692 -2.3050 1.3458 35 1 2.3491 -2.7565 0.9287 36 1 2.8577 -5.9989 4.4589 37 1 4.4854 -5.3414 4.1651 38 1 4.6453 -4.6709 6.5466 39 1 3.0177 -5.3282 6.8412 40 1 5.6928 -8.6725 8.7831 41 1 2.9761 -0.6616 4.2114 42 1 4.1094 -1.5153 3.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914929266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = -147.601453 kcal Electronic energy + Delta-G solvation = -22551.732394 eV Core-core repulsion = 19109.946043 eV Total energy + Delta-G solvation = -3441.786351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.25769 -41.11530 -38.06367 -37.70512 -36.64215 -35.38287 -32.86668 -31.69857 -29.05051 -28.24742 -28.19509 -27.32810 -24.87101 -22.61921 -22.49960 -21.48480 -19.78685 -19.25687 -18.65220 -17.75930 -17.68315 -17.26789 -16.71011 -16.27312 -16.11507 -15.38966 -15.12496 -14.95188 -14.82001 -14.71097 -14.56742 -14.19367 -14.05007 -13.32400 -13.28866 -13.15203 -13.07170 -12.99401 -12.69797 -12.59910 -12.51685 -12.46314 -12.29868 -12.06938 -11.96019 -11.80846 -11.56459 -11.47404 -11.41965 -10.80130 -10.53491 -9.74233 -8.33527 -6.41628 1.07195 1.39597 1.41480 1.47395 1.49503 1.53957 1.96546 2.35362 3.01858 3.08940 3.24005 3.63705 3.70147 3.87245 3.92332 4.05108 4.07819 4.19893 4.21484 4.41566 4.50542 4.64961 4.67477 4.70187 4.71132 4.77084 4.83030 4.83626 4.92568 4.95961 5.06316 5.18510 5.28986 5.31359 5.36787 5.51253 5.55133 5.64520 6.05287 6.16374 6.64497 6.65769 7.08690 7.23727 8.82549 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036094 B = 0.003084 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.562837 B = 9078.193108 C = 9501.698336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.134 4.134 4 C -0.156 4.156 5 N -0.605 5.605 6 C 0.116 3.884 7 C -0.083 4.083 8 H 0.161 0.839 9 C 0.471 3.529 10 O -0.532 6.532 11 O -0.354 6.354 12 C 0.093 3.907 13 C -0.005 4.005 14 C -0.542 4.542 15 H 0.035 0.965 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.954 3.046 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.242 1.242 22 C -0.141 4.141 23 C 0.517 3.483 24 O -0.559 6.559 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.270 0.730 41 H 0.132 0.868 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 19.626 -15.300 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.083 3.917 3 C -0.192 4.192 4 C -0.214 4.214 5 N -0.339 5.339 6 C -0.007 4.007 7 C -0.103 4.103 8 H 0.178 0.822 9 C 0.314 3.686 10 O -0.422 6.422 11 O -0.270 6.270 12 C 0.020 3.980 13 C -0.042 4.042 14 C -0.580 4.580 15 H 0.054 0.946 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.776 3.224 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.166 1.166 22 C -0.181 4.181 23 C 0.306 3.694 24 O -0.438 6.438 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.150 0.850 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.345 19.872 -15.528 28.079 hybrid contribution 0.550 -0.578 0.647 1.027 sum -11.795 19.294 -14.881 27.071 Atomic orbital electron populations 1.22159 0.92183 1.03383 1.03348 1.20722 0.95360 0.92265 0.83380 1.22014 1.00984 0.94001 1.02191 1.22186 1.00947 1.01320 0.96909 1.48572 1.50103 1.12417 1.22806 1.22032 1.04344 0.81917 0.92395 1.21923 1.01280 0.87507 0.99553 0.82191 1.23659 0.74686 0.89815 0.80427 1.90666 1.52158 1.52625 1.46757 1.86466 1.72449 1.37256 1.30866 1.22970 0.96966 0.79300 0.98754 1.19470 0.97536 0.95742 0.91483 1.21137 1.42172 0.99666 0.94998 0.94619 1.25956 0.93658 0.96839 1.02241 1.70043 1.43323 1.21023 1.24141 0.85611 0.78575 0.80324 0.77903 1.18730 1.20940 1.16561 1.22356 1.00341 0.94383 1.01035 1.20926 0.77337 0.87268 0.83897 1.90728 1.55217 1.19162 1.78730 0.92529 0.89542 0.91025 0.93643 0.90203 0.92982 0.91452 0.89330 0.93650 0.86615 0.90117 0.92036 0.92425 0.94657 0.94553 0.92110 0.85005 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.49 71.98 0.61 -0.93 16 2 C 0.17 2.44 1.20 3.60 0.00 2.44 16 3 C -0.13 -2.37 7.00 71.98 0.50 -1.87 16 4 C -0.16 -1.99 8.54 71.98 0.61 -1.37 16 5 N -0.61 -10.68 2.76 -771.05 -2.13 -12.81 16 6 C 0.12 1.82 5.96 86.83 0.52 2.33 16 7 C -0.08 -1.45 3.66 -10.48 -0.04 -1.48 16 8 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 9 C 0.47 12.78 7.19 71.24 0.51 13.29 16 10 O -0.53 -17.48 15.25 21.97 0.34 -17.15 16 11 O -0.35 -11.44 10.22 -51.38 -0.53 -11.97 16 12 C 0.09 3.71 5.40 71.98 0.39 4.09 16 13 C 0.00 -0.22 4.42 29.85 0.13 -0.09 16 14 C -0.54 -30.55 9.66 25.60 0.25 -30.30 16 15 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 16 C 0.01 0.63 5.47 84.65 0.46 1.09 16 17 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 18 Si 0.95 42.50 27.47 68.60 1.88 44.38 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 22 C -0.14 -2.65 6.41 30.59 0.20 -2.45 16 23 C 0.52 11.51 7.84 87.90 0.69 12.20 16 24 O -0.56 -16.14 13.99 -3.05 -0.04 -16.18 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.59 7.21 -2.39 -0.02 0.58 16 28 H 0.04 1.02 7.04 -2.39 -0.02 1.00 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.10 7.10 -2.39 -0.02 1.08 16 31 H 0.07 0.80 7.90 -2.39 -0.02 0.78 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 1.23 7.12 -2.39 -0.02 1.22 16 35 H 0.08 1.54 6.96 -2.39 -0.02 1.52 16 36 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 37 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 38 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 39 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 2.12 7.89 -2.39 -0.02 2.10 16 Total: -1.00 -71.11 341.20 5.60 -65.50 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.94 Total: 9.08 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.84 Total: -3.04 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.83 Total: -70.63 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.23 Total: -45.30 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Total: -71.11 5.60 -65.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914929266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.099 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds