Wall clock time and date at job start Tue Mar 31 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47505 * 2 1 4 4 C 1.53002 * 109.47021 * 239.99954 * 2 1 3 5 5 N 1.46505 * 109.47128 * 120.00194 * 2 1 3 6 6 C 1.46760 * 124.35088 * 59.99856 * 5 2 1 7 7 C 1.54481 * 105.47619 * 163.00579 * 6 5 2 8 8 H 1.08999 * 110.96787 * 267.26089 * 7 6 5 9 9 C 1.50698 * 110.97200 * 143.53191 * 7 6 5 10 10 O 1.20822 * 119.99804 * 0.02562 * 9 7 6 11 11 O 1.34231 * 120.00053 * 180.02562 * 9 7 6 12 12 C 1.45198 * 116.99983 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46725 * 60.00093 * 18 16 14 20 20 H 1.48505 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00069 * 18 16 14 22 22 C 1.54629 * 101.76117 * 25.41324 * 7 6 5 23 23 C 1.34415 * 124.34754 * 240.02194 * 5 2 1 24 24 O 1.21284 * 124.94468 * 0.38572 * 23 5 2 25 25 H 1.08994 * 109.46943 * 299.99985 * 1 2 3 26 26 H 1.08999 * 109.47253 * 59.99874 * 1 2 3 27 27 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47352 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46968 * 300.00301 * 3 2 1 30 30 H 1.09007 * 109.47186 * 59.99821 * 3 2 1 31 31 H 1.09001 * 109.46835 * 299.99755 * 4 2 1 32 32 H 1.08999 * 109.46967 * 59.99996 * 4 2 1 33 33 H 1.08998 * 109.47052 * 180.02562 * 4 2 1 34 34 H 1.08996 * 110.24930 * 44.00525 * 6 5 2 35 35 H 1.09005 * 110.32122 * 282.04445 * 6 5 2 36 36 H 1.09002 * 109.47379 * 59.99613 * 12 11 9 37 37 H 1.09001 * 109.46782 * 299.99696 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99482 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99654 * 13 12 11 40 40 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.48573 * 93.88338 * 22 7 6 42 42 H 1.09003 * 110.49053 * 216.52109 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 1.7232 -2.0908 1.5225 7 6 2.7661 -2.4943 2.5883 8 1 3.6432 -2.9456 2.1245 9 6 2.1618 -3.4228 3.6099 10 8 1.0023 -3.7498 3.5179 11 8 2.9117 -3.8866 4.6220 12 6 2.2638 -4.7772 5.5682 13 6 3.2688 -5.1991 6.6419 14 6 2.5964 -6.1239 7.6236 15 1 1.5563 -6.3843 7.4948 16 6 3.3093 -6.6375 8.6862 17 7 4.5761 -6.3208 8.8427 18 14 2.4757 -7.7833 9.9035 19 1 1.9786 -8.9869 9.1896 20 1 3.4516 -8.1939 10.9449 21 1 1.3347 -7.0806 10.5432 22 6 3.1153 -1.1273 3.2210 23 6 2.7939 -0.1233 2.1360 24 8 3.1800 1.0263 2.1169 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.8293 -2.7153 0.6356 35 1 0.7154 -2.1806 1.9280 36 1 1.8996 -5.6611 5.0445 37 1 1.4256 -4.2616 6.0370 38 1 4.1067 -5.7148 6.1727 39 1 3.6334 -4.3155 7.1656 40 1 5.0777 -6.6824 9.5900 41 1 2.5000 -0.9466 4.1024 42 1 4.1737 -1.0852 3.4784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914929268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:55 Heat of formation + Delta-G solvation = -132.207367 kcal Electronic energy + Delta-G solvation = -22491.520466 eV Core-core repulsion = 19050.401653 eV Total energy + Delta-G solvation = -3441.118813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25635 -39.86292 -36.97731 -36.53299 -35.63490 -33.39734 -31.11457 -30.14172 -28.20236 -27.66716 -27.38464 -25.40141 -23.69920 -21.70058 -21.05024 -20.23814 -18.88959 -17.82379 -16.81329 -16.74012 -16.05173 -15.97911 -15.60325 -15.18511 -14.55420 -14.34709 -14.19638 -14.00379 -13.91027 -13.50099 -12.96769 -12.88492 -12.56038 -12.43978 -12.34786 -12.30412 -11.95357 -11.77094 -11.64663 -11.33464 -11.28920 -11.28519 -11.10055 -10.79558 -10.75047 -10.38777 -9.74108 -9.70880 -9.56493 -9.35701 -8.91055 -8.47852 -6.13895 -4.18802 2.31729 2.42721 2.56105 3.02112 3.27647 3.32095 3.35098 4.02188 4.12459 4.35650 4.49869 4.57353 4.65253 4.71118 4.73270 5.11880 5.15973 5.22636 5.22709 5.29212 5.36664 5.41183 5.45545 5.52446 5.61782 5.64054 5.66321 5.74958 5.97754 5.99518 6.00970 6.07626 6.41614 6.56216 6.84423 6.91311 7.49743 7.56832 7.80918 7.99242 8.04925 8.19250 8.86515 9.45922 10.97488 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.040750 B = 0.002869 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.943977 B = 9756.869127 C =10091.406039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.611 5.611 6 C 0.114 3.886 7 C -0.098 4.098 8 H 0.127 0.873 9 C 0.468 3.532 10 O -0.512 6.512 11 O -0.351 6.351 12 C 0.075 3.925 13 C 0.025 3.975 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.143 4.143 23 C 0.523 3.477 24 O -0.525 6.525 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.111 0.889 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 11.371 -19.571 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.217 4.217 5 N -0.346 5.346 6 C -0.009 4.009 7 C -0.117 4.117 8 H 0.145 0.855 9 C 0.310 3.690 10 O -0.401 6.401 11 O -0.266 6.266 12 C 0.002 3.998 13 C -0.012 4.012 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.183 4.183 23 C 0.311 3.689 24 O -0.401 6.401 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.839 11.865 -19.514 23.345 hybrid contribution -0.544 -0.949 0.772 1.339 sum -5.383 10.916 -18.742 22.347 Atomic orbital electron populations 1.22202 0.94128 1.02670 1.02685 1.20489 0.93973 0.93006 0.83520 1.22103 1.02539 0.93096 1.02071 1.22198 1.01873 1.00836 0.96744 1.48453 1.51018 1.12423 1.22680 1.21972 0.99412 0.81772 0.97783 1.21848 1.00646 0.94814 0.94432 0.85481 1.22869 0.84968 0.79397 0.81750 1.90644 1.18073 1.56773 1.74627 1.86531 1.44652 1.59672 1.35775 1.23714 0.97748 0.89971 0.88331 1.19171 0.94008 0.97113 0.90940 1.20931 0.97370 1.28691 1.09714 0.92301 1.24978 0.94854 0.96504 0.97741 1.69955 1.07926 1.44180 1.30708 0.86530 0.79172 0.81004 0.80582 1.20056 1.21094 1.20046 1.22348 1.06113 0.91244 0.98598 1.20742 0.77436 0.87866 0.82890 1.90734 1.54691 1.17489 1.77236 0.92038 0.91251 0.91980 0.91216 0.92405 0.91190 0.92056 0.91199 0.92006 0.89468 0.88894 0.92136 0.92165 0.95309 0.95287 0.92589 0.87111 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.54 37.16 0.32 -0.89 16 2 C 0.17 1.50 1.20 -131.82 -0.16 1.35 16 3 C -0.14 -1.35 7.00 37.15 0.26 -1.09 16 4 C -0.16 -1.09 8.49 37.16 0.32 -0.78 16 5 N -0.61 -6.20 2.76 -157.58 -0.43 -6.63 16 6 C 0.11 1.09 5.96 -3.12 -0.02 1.07 16 7 C -0.10 -1.05 3.66 -90.14 -0.33 -1.38 16 8 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 9 C 0.47 7.16 7.19 36.00 0.26 7.41 16 10 O -0.51 -8.94 15.25 -18.75 -0.29 -9.23 16 11 O -0.35 -6.41 10.22 -39.26 -0.40 -6.81 16 12 C 0.07 1.57 5.40 37.16 0.20 1.77 16 13 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 14 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 18 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 C -0.14 -1.57 6.41 -26.74 -0.17 -1.74 16 23 C 0.52 6.36 7.84 -10.86 -0.09 6.28 16 24 O -0.52 -7.83 13.99 5.55 0.08 -7.75 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 28 H 0.07 0.77 7.08 -51.93 -0.37 0.41 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.80 7.06 -51.92 -0.37 0.43 16 31 H 0.06 0.39 7.21 -51.93 -0.37 0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.67 7.12 -51.93 -0.37 0.30 16 35 H 0.09 1.01 6.96 -51.93 -0.36 0.65 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.11 1.27 7.89 -51.93 -0.41 0.86 16 42 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.56 344.80 -6.95 -38.52 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.85 Total: -3.34 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.03 Total: -0.76 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.30 Total: -31.88 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.61 Total: -23.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.56 -6.95 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914929268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.689 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds