Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 C 1.53001 * 109.47162 * 240.00118 * 2 1 3 5 5 C 1.50706 * 109.47393 * 120.00501 * 2 1 3 6 6 O 1.21277 * 119.99846 * 1.88208 * 5 2 1 7 7 N 1.34773 * 119.99972 * 181.88607 * 5 2 1 8 8 C 1.46921 * 120.63062 * 354.92395 * 7 5 2 9 9 C 1.53197 * 108.77082 * 126.41584 * 8 7 5 10 10 C 1.53035 * 109.31499 * 54.63849 * 9 8 7 11 11 C 1.53044 * 109.53244 * 298.62957 * 10 9 8 12 12 H 1.09001 * 109.52595 * 301.39727 * 11 10 9 13 13 C 1.50703 * 109.49562 * 181.31711 * 11 10 9 14 14 O 1.21209 * 120.00193 * 240.16616 * 13 11 10 15 15 O 1.34317 * 119.99758 * 60.16283 * 13 11 10 16 16 C 1.34930 * 116.99730 * 179.97438 * 15 13 11 17 17 H 1.07991 * 119.99559 * 359.97438 * 16 15 13 18 18 C 1.38743 * 119.99571 * 179.72570 * 16 15 13 19 19 N 1.31446 * 120.00428 * 0.27585 * 18 16 15 20 20 Si 1.86806 * 119.99975 * 180.27546 * 18 16 15 21 21 H 1.48494 * 109.47289 * 89.99736 * 20 18 16 22 22 H 1.48495 * 109.47152 * 210.00369 * 20 18 16 23 23 H 1.48504 * 109.46965 * 330.00080 * 20 18 16 24 24 C 1.46922 * 120.62846 * 174.94725 * 7 5 2 25 25 H 1.09004 * 109.46825 * 299.99856 * 1 2 3 26 26 H 1.09002 * 109.47131 * 59.99491 * 1 2 3 27 27 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46923 * 169.49869 * 3 2 1 29 29 H 1.08995 * 109.47265 * 289.50874 * 3 2 1 30 30 H 1.09009 * 109.46293 * 49.50581 * 3 2 1 31 31 H 1.08997 * 109.46982 * 310.02199 * 4 2 1 32 32 H 1.09000 * 109.46965 * 70.01900 * 4 2 1 33 33 H 1.08997 * 109.47259 * 190.01641 * 4 2 1 34 34 H 1.08994 * 109.58828 * 246.19570 * 8 7 5 35 35 H 1.08992 * 109.59103 * 6.48631 * 8 7 5 36 36 H 1.09006 * 109.49428 * 174.58408 * 9 8 7 37 37 H 1.08995 * 109.49748 * 294.64625 * 9 8 7 38 38 H 1.09005 * 109.45909 * 178.61601 * 10 9 8 39 39 H 1.08996 * 109.46709 * 58.65259 * 10 9 8 40 40 H 0.96999 * 119.99913 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.58644 * 113.79649 * 24 7 5 42 42 H 1.09007 * 109.59214 * 353.37773 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2448 -1.2013 2.0113 7 7 3.3568 -0.8005 1.4630 8 6 4.3257 -0.3096 0.4736 9 6 5.2807 0.6701 1.1627 10 6 5.9139 -0.0107 2.3782 11 6 4.8195 -0.3999 3.3747 12 1 4.2697 0.4910 3.6784 13 6 5.4467 -1.0411 4.5857 14 8 5.1557 -2.1780 4.8887 15 8 6.3283 -0.3526 5.3292 16 6 6.8522 -0.9848 6.4000 17 1 6.5575 -1.9990 6.6257 18 6 7.7733 -0.3338 7.2079 19 7 8.1315 0.9008 6.9334 20 14 8.5044 -1.2116 8.6858 21 1 9.7407 -1.9250 8.2762 22 1 8.8322 -0.2180 9.7395 23 1 7.5213 -2.1899 9.2167 24 6 3.8592 -1.3917 2.7107 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1138 1.4481 0.1873 29 1 1.8376 1.8994 -0.9686 30 1 1.5319 2.0074 0.7816 31 1 1.5380 -1.6842 -1.3432 32 1 1.8300 -0.1146 -2.1302 33 1 3.1152 -0.8786 -1.1644 34 1 4.8920 -1.1486 0.0693 35 1 3.7981 0.1980 -0.3338 36 1 6.0627 0.9680 0.4642 37 1 4.7268 1.5514 1.4861 38 1 6.6126 0.6761 2.8562 39 1 6.4471 -0.9053 2.0567 40 1 8.7757 1.3558 7.4980 41 1 4.3875 -2.3191 2.4888 42 1 3.0240 -1.5960 3.3806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920721601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -115.774764 kcal Electronic energy + Delta-G solvation = -23459.988006 eV Core-core repulsion = 20019.581763 eV Total energy + Delta-G solvation = -3440.406242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85111 -39.14393 -37.23826 -36.02549 -35.10756 -32.79445 -32.08440 -31.12509 -27.64853 -27.44279 -25.96226 -25.52522 -23.85343 -22.28533 -21.02869 -19.46664 -18.71075 -17.72094 -16.87625 -16.35675 -16.12047 -15.34183 -14.95766 -14.73598 -14.52418 -14.26303 -14.11183 -14.00752 -13.74784 -13.20429 -12.85787 -12.63447 -12.55706 -12.38279 -12.26725 -11.99264 -11.86432 -11.60372 -11.28689 -11.26685 -11.17651 -11.12587 -10.85404 -10.54075 -10.44280 -10.43055 -10.30037 -9.78614 -9.53726 -8.99823 -8.58385 -8.54840 -6.41307 -4.08910 2.65277 2.95464 3.10863 3.19675 3.25904 3.50909 3.96095 4.25683 4.50698 4.54910 4.66293 4.79746 4.89249 4.96368 5.04064 5.13373 5.17036 5.29205 5.35277 5.38022 5.45327 5.51087 5.57281 5.62899 5.66955 5.73306 5.78914 5.87995 5.90963 6.01769 6.06498 6.13751 6.18802 6.39005 6.45596 6.54512 6.82871 7.40039 7.45294 7.95400 8.21959 8.70683 9.07897 9.85252 10.76622 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035495 B = 0.003799 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.656583 B = 7369.472202 C = 7694.649382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.159 4.159 4 C -0.157 4.157 5 C 0.523 3.477 6 O -0.538 6.538 7 N -0.608 5.608 8 C 0.081 3.919 9 C -0.135 4.135 10 C -0.111 4.111 11 C -0.082 4.082 12 H 0.096 0.904 13 C 0.404 3.596 14 O -0.555 6.555 15 O -0.211 6.211 16 C -0.382 4.382 17 H 0.095 0.905 18 C 0.043 3.957 19 N -0.866 5.866 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.266 1.266 24 C 0.132 3.868 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.269 0.731 41 H 0.077 0.923 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 2.646 -18.004 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 C -0.216 4.216 4 C -0.214 4.214 5 C 0.311 3.689 6 O -0.415 6.415 7 N -0.341 5.341 8 C -0.041 4.041 9 C -0.174 4.174 10 C -0.149 4.149 11 C -0.103 4.103 12 H 0.114 0.886 13 C 0.250 3.750 14 O -0.452 6.452 15 O -0.118 6.118 16 C -0.458 4.458 17 H 0.113 0.887 18 C -0.161 4.161 19 N -0.503 5.503 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.191 1.191 24 C 0.010 3.990 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.244 2.261 -17.399 19.385 hybrid contribution 0.511 -0.342 0.818 1.023 sum -7.733 1.918 -16.581 18.396 Atomic orbital electron populations 1.21657 0.91968 1.02794 1.01912 1.20766 0.97994 0.96412 0.93737 1.22276 1.02701 0.93687 1.02953 1.22260 1.02402 1.00843 0.95934 1.20580 0.81661 0.79464 0.87235 1.90692 1.54848 1.47461 1.48470 1.48069 1.05452 1.61053 1.19490 1.22454 0.91481 0.98213 0.91926 1.21998 0.98876 0.98494 0.97988 1.21492 0.97161 1.01620 0.94578 1.21047 0.96917 0.99669 0.92627 0.88561 1.22887 0.81070 0.85595 0.85458 1.90568 1.62954 1.19835 1.71838 1.83869 1.48667 1.43532 1.35735 1.21233 1.23179 0.99555 1.01879 0.88717 1.25314 0.96175 0.95842 0.98793 1.69990 1.31156 1.10745 1.38382 0.85692 0.79323 0.78714 0.79602 1.19899 1.20331 1.19084 1.21380 0.98068 0.94782 0.84793 0.91956 0.92148 0.91957 0.90445 0.91373 0.91840 0.91939 0.91329 0.90750 0.91147 0.87374 0.90196 0.91068 0.89554 0.91391 0.92118 0.90484 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.73 37.16 0.29 -0.96 16 2 C -0.09 -0.86 0.75 -155.66 -0.12 -0.98 16 3 C -0.16 -1.32 8.09 37.16 0.30 -1.01 16 4 C -0.16 -1.22 8.09 37.16 0.30 -0.92 16 5 C 0.52 7.52 6.49 -10.98 -0.07 7.45 16 6 O -0.54 -9.98 15.42 5.56 0.09 -9.89 16 7 N -0.61 -8.36 2.97 -172.78 -0.51 -8.87 16 8 C 0.08 0.82 3.94 -3.71 -0.01 0.80 16 9 C -0.14 -1.45 5.74 -26.61 -0.15 -1.61 16 10 C -0.11 -1.69 5.11 -26.69 -0.14 -1.83 16 11 C -0.08 -1.52 2.78 -91.65 -0.25 -1.78 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 13 C 0.40 10.00 7.20 36.01 0.26 10.26 16 14 O -0.55 -15.06 15.16 -19.05 -0.29 -15.35 16 15 O -0.21 -6.02 9.63 -20.75 -0.20 -6.22 16 16 C -0.38 -11.36 9.65 30.92 0.30 -11.06 16 17 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 18 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 19 N -0.87 -25.25 13.67 55.48 0.76 -24.49 16 20 Si 0.94 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.13 2.28 5.05 -3.71 -0.02 2.26 16 25 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.08 0.62 3.87 -51.93 -0.20 0.42 16 29 H 0.07 0.42 8.01 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.11 -51.92 -0.42 0.16 16 31 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.07 0.40 8.02 -51.93 -0.42 -0.02 16 33 H 0.07 0.54 4.74 -51.93 -0.25 0.29 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.83 2.83 -51.93 -0.15 0.68 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 7.43 -51.93 -0.39 0.37 16 38 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.36 7.96 -51.93 -0.41 0.95 16 42 H 0.10 1.93 7.04 -51.93 -0.37 1.56 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -34.81 330.10 -5.92 -40.74 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.30 Total: 0.97 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.59 Total: 1.74 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.25 Total: -33.36 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.40 Total: -31.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.81 -5.92 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920721601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.039 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds